Wall clock time and date at job start Mon Mar 30 2020 02:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99931 * 2 1 4 4 H 1.48495 * 109.47209 * 240.00466 * 3 2 1 5 5 H 1.48499 * 109.46678 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46883 * 120.00089 * 3 2 1 7 7 C 1.37879 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46941 * 180.02562 * 9 7 2 11 11 C 1.53119 * 109.52212 * 174.99917 * 10 9 7 12 12 C 1.53041 * 109.27947 * 177.62475 * 11 10 9 13 13 N 1.46847 * 109.51947 * 300.82007 * 12 11 10 14 14 C 1.46906 * 111.00074 * 185.84173 * 13 12 11 15 15 C 1.52994 * 109.47169 * 169.99894 * 14 13 12 16 16 C 1.53004 * 109.46928 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47332 * 180.02562 * 16 15 14 18 18 C 1.36881 * 126.39751 * 89.99853 * 17 16 15 19 19 C 1.34668 * 106.81875 * 180.02562 * 18 17 16 20 20 N 1.34134 * 108.01972 * 359.97438 * 19 18 17 21 21 C 1.30501 * 109.25535 * 0.02562 * 20 19 18 22 22 C 1.46847 * 111.19949 * 61.74382 * 13 12 11 23 23 C 1.53034 * 109.52244 * 298.25650 * 22 13 12 24 24 H 0.97006 * 120.00604 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47082 * 60.00047 * 9 7 2 26 26 H 1.08997 * 109.46973 * 300.00196 * 9 7 2 27 27 H 1.09003 * 109.52489 * 54.87094 * 10 9 7 28 28 H 1.09004 * 109.50323 * 57.67958 * 11 10 9 29 29 H 1.08998 * 109.50636 * 297.56624 * 11 10 9 30 30 H 1.09003 * 109.46323 * 180.81131 * 12 11 10 31 31 H 1.08987 * 109.45517 * 60.82842 * 12 11 10 32 32 H 1.09000 * 109.46780 * 49.99726 * 14 13 12 33 33 H 1.09004 * 109.46868 * 289.99989 * 14 13 12 34 34 H 1.09000 * 109.47407 * 60.00216 * 15 14 13 35 35 H 1.08991 * 109.47567 * 299.99619 * 15 14 13 36 36 H 1.08997 * 109.46927 * 60.00502 * 16 15 14 37 37 H 1.09004 * 109.47199 * 300.00150 * 16 15 14 38 38 H 1.08003 * 126.59103 * 359.97438 * 18 17 16 39 39 H 1.08001 * 125.99672 * 180.02562 * 19 18 17 40 40 H 1.07996 * 125.64878 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46154 * 58.27075 * 22 13 12 42 42 H 1.08999 * 109.45974 * 178.23839 * 22 13 12 43 43 H 1.08999 * 109.50544 * 299.23721 * 23 22 13 44 44 H 1.08997 * 109.50249 * 179.11808 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4851 -4.9852 0.1253 12 6 2.4795 -6.1469 0.0651 13 7 3.2112 -6.1011 -1.2073 14 6 4.0755 -7.2791 -1.3603 15 6 4.6255 -7.3262 -2.7872 16 6 5.5262 -8.5528 -2.9463 17 7 6.0534 -8.5976 -4.3124 18 6 7.2156 -8.0247 -4.7538 19 6 7.3156 -8.3079 -6.0665 20 7 6.2440 -9.0345 -6.4171 21 6 5.4835 -9.2118 -5.3715 22 6 3.9865 -4.8601 -1.3296 23 6 3.0371 -3.6600 -1.3110 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8896 27 1 2.9313 -3.5547 0.8397 28 1 0.7714 -5.0742 -0.6938 29 1 0.9532 -5.0104 1.0763 30 1 1.9400 -7.0911 0.1399 31 1 3.1843 -6.0647 0.8924 32 1 3.4972 -8.1820 -1.1638 33 1 4.9031 -7.2167 -0.6537 34 1 5.2038 -6.4234 -2.9837 35 1 3.7980 -7.3887 -3.4938 36 1 4.9483 -9.4558 -2.7498 37 1 6.3538 -8.4900 -2.2398 38 1 7.9171 -7.4543 -4.1629 39 1 8.1184 -8.0041 -6.7221 40 1 4.5524 -9.7588 -5.3559 41 1 4.6843 -4.7841 -0.4957 42 1 4.5416 -4.8696 -2.2677 43 1 2.3479 -3.7281 -2.1527 44 1 3.6142 -2.7383 -1.3861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399281663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:27 Heat of formation + Delta-G solvation = 25.190726 kcal Electronic energy + Delta-G solvation = -21097.335870 eV Core-core repulsion = 18048.935726 eV Total energy + Delta-G solvation = -3048.400144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.87484 -40.15479 -37.02342 -35.55903 -34.23663 -32.06856 -31.57902 -30.30751 -29.44944 -26.70794 -25.11590 -24.19913 -22.79565 -22.22011 -21.86988 -21.56464 -20.45045 -18.45494 -18.31322 -16.82553 -16.50688 -16.42113 -16.09763 -15.55326 -15.28798 -15.07015 -14.79903 -14.71272 -14.69364 -14.19788 -14.04982 -13.82889 -13.32449 -13.27842 -13.01136 -12.79355 -12.70705 -12.52390 -12.35910 -12.14318 -12.01356 -11.75188 -11.62617 -11.23986 -10.91162 -10.85538 -10.71544 -10.52456 -10.50860 -9.41271 -9.20270 -8.18349 -6.28256 1.18817 1.38376 1.41112 1.48796 1.95772 2.26382 2.40621 2.97561 3.14678 3.77015 3.90349 3.92632 3.98670 4.06436 4.10211 4.17748 4.27610 4.32789 4.40766 4.50404 4.60148 4.63105 4.64700 4.72230 4.76763 4.81890 4.84345 4.93569 5.03814 5.10800 5.16541 5.24971 5.37785 5.41535 5.41853 5.44973 5.56972 5.80397 5.86547 5.88613 6.17328 6.24960 6.30129 6.36135 6.88049 7.18582 7.40204 8.93401 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.002981 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.555177 B = 9389.670168 C =10166.073074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.074 4.074 11 C -0.109 4.109 12 C 0.069 3.931 13 N -0.551 5.551 14 C 0.062 3.938 15 C -0.124 4.124 16 C 0.109 3.891 17 N -0.456 5.456 18 C -0.053 4.053 19 C -0.063 4.063 20 N -0.543 5.543 21 C 0.174 3.826 22 C 0.066 3.934 23 C -0.096 4.096 24 H 0.262 0.738 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.197 0.803 39 H 0.176 0.824 40 H 0.227 0.773 41 H 0.033 0.967 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.274 -20.114 -3.077 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.093 4.093 11 C -0.147 4.147 12 C -0.059 4.059 13 N -0.276 5.276 14 C -0.066 4.066 15 C -0.162 4.162 16 C -0.012 4.012 17 N -0.138 5.138 18 C -0.186 4.186 19 C -0.210 4.210 20 N -0.263 5.263 21 C -0.108 4.108 22 C -0.062 4.062 23 C -0.134 4.134 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.004 0.996 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.214 0.786 39 H 0.193 0.807 40 H 0.244 0.756 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.576 -20.313 -4.080 24.237 hybrid contribution 0.572 1.799 1.302 2.293 sum 13.147 -18.514 -2.778 22.877 Atomic orbital electron populations 1.70095 1.07817 1.27644 1.52104 1.25968 0.95701 1.03257 0.95069 0.85577 0.78336 0.78458 0.79166 1.19202 1.21033 1.19159 1.21630 0.93360 0.92172 1.49734 0.92177 1.19006 0.94047 0.93160 0.94158 1.21078 0.96868 0.94419 0.96926 1.21614 0.97980 0.94016 1.01087 1.22008 0.95747 0.98786 0.89358 1.61852 1.28771 1.02300 1.34656 1.22020 0.95663 0.93481 0.95474 1.21857 0.99134 0.97633 0.97598 1.22040 0.99522 1.00501 0.79186 1.45773 1.17848 1.39301 1.10845 1.23158 0.92571 1.05737 0.97183 1.22649 0.99579 1.03833 0.94945 1.70241 1.06229 1.19768 1.30012 1.25515 1.01579 1.01859 0.81880 1.22047 0.94299 0.89107 1.00699 1.21421 0.97884 0.96989 0.97095 0.92927 0.99614 0.99618 0.93364 0.92894 0.92022 0.88887 0.94662 0.88621 0.93659 0.92355 0.91587 0.86298 0.87289 0.78631 0.80671 0.75628 0.94908 0.90175 0.93687 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.53 -30.18 8.45 25.60 0.22 -29.97 16 8 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 9 C 0.03 1.77 4.45 29.85 0.13 1.91 16 10 C -0.07 -3.01 2.20 -10.72 -0.02 -3.04 16 11 C -0.11 -3.62 5.38 30.65 0.16 -3.46 16 12 C 0.07 1.67 5.46 86.33 0.47 2.14 16 13 N -0.55 -13.00 4.66 -896.36 -4.17 -17.18 16 14 C 0.06 0.90 4.96 86.30 0.43 1.32 16 15 C -0.12 -1.68 5.47 30.59 0.17 -1.51 16 16 C 0.11 0.94 6.15 86.38 0.53 1.47 16 17 N -0.46 -6.74 2.75 -529.06 -1.46 -8.19 16 18 C -0.05 -0.85 11.58 83.09 0.96 0.11 16 19 C -0.06 -1.30 11.87 83.52 0.99 -0.31 16 20 N -0.54 -13.20 11.25 -200.31 -2.25 -15.45 16 21 C 0.17 3.13 12.56 180.26 2.26 5.40 16 22 C 0.07 1.80 5.29 86.32 0.46 2.26 16 23 C -0.10 -3.55 5.15 30.64 0.16 -3.39 16 24 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 25 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 1.81 8.02 -2.39 -0.02 1.80 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 1.04 7.99 -2.39 -0.02 1.03 16 33 H 0.05 0.59 8.12 -2.38 -0.02 0.57 16 34 H 0.06 0.98 6.43 -2.39 -0.02 0.96 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.11 0.60 8.14 -2.38 -0.02 0.59 16 38 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.23 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 1.97 6.21 -2.39 -0.01 1.96 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 2.14 7.06 -2.39 -0.02 2.12 16 Total: -1.00 -72.72 350.18 2.75 -69.97 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.94 Total: 8.56 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 7.38 Total: -26.77 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -7.60 Total: -98.37 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -72.72 2.75 -69.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399281663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.161 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds