Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.64425 * 2 1 4 4 C 1.34127 * 109.25683 * 180.14781 * 3 2 1 5 5 C 1.34672 * 108.01948 * 359.61488 * 4 3 2 6 6 N 1.35041 * 125.65474 * 179.72125 * 2 1 3 7 7 C 1.46499 * 126.39624 * 0.02562 * 6 2 1 8 8 C 1.53002 * 109.46911 * 84.97321 * 7 6 2 9 9 N 1.46910 * 109.46530 * 179.97438 * 8 7 6 10 10 C 1.46841 * 110.99932 * 45.79408 * 9 8 7 11 11 C 1.53039 * 109.52054 * 185.83915 * 10 9 8 12 12 C 1.53123 * 109.27638 * 300.81434 * 11 10 9 13 13 C 1.52999 * 109.52058 * 177.55683 * 12 11 10 14 14 C 1.50702 * 109.46991 * 65.32514 * 13 12 11 15 15 H 1.08001 * 119.99835 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00387 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99727 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47279 * 89.99981 * 18 16 14 20 20 H 1.48505 * 109.46906 * 209.99803 * 18 16 14 21 21 H 1.48497 * 109.47152 * 329.99688 * 18 16 14 22 22 C 1.53121 * 109.15980 * 57.65703 * 12 11 10 23 23 C 1.46851 * 110.99320 * 170.00045 * 9 8 7 24 24 H 1.09004 * 109.47126 * 270.26935 * 1 2 3 25 25 H 1.08994 * 109.47481 * 30.27445 * 1 2 3 26 26 H 1.09006 * 109.46847 * 150.28064 * 1 2 3 27 27 H 1.08002 * 125.99481 * 179.88589 * 4 3 2 28 28 H 1.07997 * 126.59503 * 180.24939 * 5 4 3 29 29 H 1.09005 * 109.46791 * 204.97216 * 7 6 2 30 30 H 1.09001 * 109.46806 * 324.97065 * 7 6 2 31 31 H 1.08992 * 109.47095 * 299.99366 * 8 7 6 32 32 H 1.08996 * 109.47169 * 60.00366 * 8 7 6 33 33 H 1.09002 * 109.46327 * 305.84653 * 10 9 8 34 34 H 1.08994 * 109.46867 * 65.81885 * 10 9 8 35 35 H 1.09001 * 109.50224 * 180.87825 * 11 10 9 36 36 H 1.09005 * 109.50702 * 60.75840 * 11 10 9 37 37 H 1.09000 * 109.52463 * 297.75465 * 12 11 10 38 38 H 1.09000 * 109.47000 * 185.31570 * 13 12 11 39 39 H 1.08991 * 109.47718 * 305.31821 * 13 12 11 40 40 H 0.96997 * 120.00186 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.50737 * 182.40263 * 22 12 11 42 42 H 1.09001 * 109.53672 * 62.30224 * 22 12 11 43 43 H 1.09005 * 109.46242 * 294.17328 * 23 9 8 44 44 H 1.08995 * 109.46730 * 54.15702 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 -0.0033 5 6 3.5927 -0.6640 0.0032 6 7 2.2942 -1.0973 0.0053 7 6 1.8427 -2.4909 0.0116 8 6 1.5658 -2.9437 -1.4234 9 7 1.1137 -4.3415 -1.4171 10 6 0.0998 -4.5619 -0.3780 11 6 -0.2403 -6.0522 -0.3033 12 6 -0.7664 -6.5194 -1.6633 13 6 -1.0509 -8.0218 -1.6127 14 6 -2.1757 -8.2879 -0.6457 15 1 -2.6408 -7.4674 -0.1195 16 6 -2.6109 -9.5787 -0.4328 17 7 -2.0449 -10.5777 -1.0738 18 14 -4.0047 -9.9084 0.7665 19 1 -5.3016 -9.8545 0.0451 20 1 -3.8300 -11.2537 1.3707 21 1 -3.9906 -8.8794 1.8370 22 6 0.2890 -6.2343 -2.7354 23 6 0.6138 -4.7387 -2.7396 24 1 -0.3633 0.0048 1.0277 25 1 -0.3634 0.8874 -0.5180 26 1 -0.3633 -0.8925 -0.5095 27 1 4.4098 1.3413 -0.0058 28 1 4.4777 -1.2829 0.0065 29 1 2.6169 -3.1216 0.4487 30 1 0.9299 -2.5745 0.6015 31 1 0.7917 -2.3131 -1.8604 32 1 2.4786 -2.8602 -2.0133 33 1 0.4881 -4.2294 0.5847 34 1 -0.7992 -3.9960 -0.6219 35 1 -1.0042 -6.2134 0.4573 36 1 0.6554 -6.6175 -0.0459 37 1 -1.6838 -5.9818 -1.9033 38 1 -1.3349 -8.3715 -2.6053 39 1 -0.1562 -8.5502 -1.2837 40 1 -2.3513 -11.4858 -0.9243 41 1 -0.0966 -6.5256 -3.7124 42 1 1.1932 -6.8024 -2.5169 43 1 -0.2877 -4.1720 -2.9724 44 1 1.3755 -4.5348 -3.4921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399297861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = 46.904018 kcal Electronic energy + Delta-G solvation = -21542.222409 eV Core-core repulsion = 18494.763823 eV Total energy + Delta-G solvation = -3047.458585 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27478 -39.07249 -35.63020 -33.75711 -32.24020 -31.92499 -30.62021 -29.23613 -27.33179 -26.80088 -24.39667 -23.17069 -22.18511 -21.50919 -20.71477 -19.72389 -19.03463 -17.35869 -16.28567 -16.05735 -15.48035 -15.17518 -14.71340 -14.48995 -14.36810 -13.85987 -13.69271 -13.40013 -13.20747 -13.15463 -12.95245 -12.58019 -12.39105 -12.25906 -11.97586 -11.75244 -11.42746 -11.16292 -10.89497 -10.75943 -10.67088 -10.33906 -10.13264 -10.05125 -9.78680 -9.58298 -9.11179 -8.93426 -8.51641 -8.37209 -8.30568 -6.01143 -4.03006 1.85505 2.52433 2.98319 3.29408 3.36294 3.38408 3.91936 4.30434 4.36744 4.43848 4.52472 4.64133 4.97883 5.05797 5.12833 5.18613 5.27479 5.28242 5.33493 5.35496 5.45273 5.53098 5.55162 5.62824 5.68963 5.74904 5.83058 6.00885 6.11425 6.14557 6.33517 6.45445 6.56076 6.60046 6.87591 6.96625 7.01427 7.10536 7.14267 7.20140 7.66102 7.81935 7.94093 7.99093 8.41729 9.03578 9.60776 11.10159 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.003176 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.730054 B = 8814.374091 C = 9276.676333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.204 3.796 3 N -0.496 5.496 4 C -0.032 4.032 5 C -0.056 4.056 6 N -0.452 5.452 7 C 0.098 3.902 8 C 0.043 3.957 9 N -0.532 5.532 10 C 0.045 3.955 11 C -0.100 4.100 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.516 4.516 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.112 4.112 23 C 0.061 3.939 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.168 0.832 28 H 0.174 0.826 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.014 0.986 39 H 0.017 0.983 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.030 0.970 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 17.684 0.707 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 N -0.215 5.215 4 C -0.180 4.180 5 C -0.189 4.189 6 N -0.135 5.135 7 C -0.024 4.024 8 C -0.086 4.086 9 N -0.257 5.257 10 C -0.082 4.082 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.554 4.554 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.150 4.150 23 C -0.067 4.067 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.186 0.814 28 H 0.191 0.809 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.748 17.848 0.806 19.893 hybrid contribution -0.994 -0.697 0.411 1.282 sum 7.754 17.151 1.217 18.861 Atomic orbital electron populations 1.20210 0.85116 1.04003 1.03581 1.23301 0.95703 0.81440 1.05340 1.70238 1.02326 1.28367 1.20572 1.22270 0.94757 0.92806 1.08194 1.22748 0.87162 0.96863 1.12116 1.45458 1.06539 1.07407 1.54103 1.22146 1.02673 0.78789 0.98821 1.22387 1.00995 0.89919 0.95249 1.62056 1.39639 1.17831 1.06199 1.22396 0.92380 0.99400 0.94059 1.21556 1.01269 0.91853 0.99060 1.21244 0.95614 1.00470 0.92707 1.19110 0.96595 0.88256 0.96920 1.21240 1.17513 0.92278 1.24366 0.92726 1.25018 0.96792 0.96467 0.96191 1.69957 1.41873 0.99275 1.42406 0.86656 0.82694 0.77571 0.81436 1.20763 1.21276 1.19918 1.21701 1.00241 0.93227 0.99811 1.22124 0.97678 0.97763 0.89095 0.90130 0.89186 0.90911 0.81446 0.80898 0.87843 0.88435 0.94413 0.90264 0.91304 0.95127 0.90707 0.91726 0.92998 0.96752 0.96490 0.93049 0.91931 0.91480 0.95129 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.04 36.01 0.36 -0.25 16 2 C 0.20 2.36 7.90 -155.42 -1.23 1.13 16 3 N -0.50 -6.58 11.25 -10.81 -0.12 -6.70 16 4 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 5 C -0.06 -0.56 11.58 -16.56 -0.19 -0.75 16 6 N -0.45 -4.71 2.75 -113.90 -0.31 -5.03 16 7 C 0.10 0.91 4.93 -4.04 -0.02 0.89 16 8 C 0.04 0.45 5.60 -3.82 -0.02 0.43 16 9 N -0.53 -6.75 4.81 -234.67 -1.13 -7.88 16 10 C 0.04 0.60 4.85 -3.84 -0.02 0.58 16 11 C -0.10 -1.72 5.15 -26.65 -0.14 -1.86 16 12 C -0.08 -1.57 2.20 -90.49 -0.20 -1.77 16 13 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 14 C -0.52 -13.99 8.45 -34.44 -0.29 -14.28 16 15 H 0.05 1.43 7.08 -52.49 -0.37 1.06 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.11 -1.82 5.38 -26.65 -0.14 -1.97 16 23 C 0.06 0.82 5.42 -3.83 -0.02 0.80 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.57 7.36 -51.93 -0.38 0.19 16 27 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.86 5.99 -51.93 -0.31 0.54 16 31 H 0.04 0.40 7.61 -51.93 -0.40 0.01 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.78 5.81 -51.93 -0.30 0.48 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 1.39 7.05 -51.93 -0.37 1.02 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -31.22 347.36 -10.56 -41.78 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.60 Total: -2.27 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.34 Total: -15.56 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.83 Total: -45.39 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.22 -10.56 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399297861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.686 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds