Wall clock time and date at job start Mon Mar 30 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.64425 * 2 1 4 4 C 1.34127 * 109.25683 * 180.14781 * 3 2 1 5 5 C 1.34672 * 108.01948 * 359.61488 * 4 3 2 6 6 N 1.35041 * 125.65474 * 179.72125 * 2 1 3 7 7 C 1.46499 * 126.39624 * 0.02562 * 6 2 1 8 8 C 1.53002 * 109.46911 * 84.97321 * 7 6 2 9 9 N 1.46910 * 109.46530 * 179.97438 * 8 7 6 10 10 C 1.46841 * 110.99932 * 45.79408 * 9 8 7 11 11 C 1.53039 * 109.52054 * 185.83915 * 10 9 8 12 12 C 1.53123 * 109.27638 * 300.81434 * 11 10 9 13 13 C 1.52999 * 109.52058 * 177.55683 * 12 11 10 14 14 C 1.50702 * 109.46991 * 65.32514 * 13 12 11 15 15 H 1.08001 * 119.99835 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00387 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99727 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47279 * 89.99981 * 18 16 14 20 20 H 1.48505 * 109.46906 * 209.99803 * 18 16 14 21 21 H 1.48497 * 109.47152 * 329.99688 * 18 16 14 22 22 C 1.53121 * 109.15980 * 57.65703 * 12 11 10 23 23 C 1.46851 * 110.99320 * 170.00045 * 9 8 7 24 24 H 1.09004 * 109.47126 * 270.26935 * 1 2 3 25 25 H 1.08994 * 109.47481 * 30.27445 * 1 2 3 26 26 H 1.09006 * 109.46847 * 150.28064 * 1 2 3 27 27 H 1.08002 * 125.99481 * 179.88589 * 4 3 2 28 28 H 1.07997 * 126.59503 * 180.24939 * 5 4 3 29 29 H 1.09005 * 109.46791 * 204.97216 * 7 6 2 30 30 H 1.09001 * 109.46806 * 324.97065 * 7 6 2 31 31 H 1.08992 * 109.47095 * 299.99366 * 8 7 6 32 32 H 1.08996 * 109.47169 * 60.00366 * 8 7 6 33 33 H 1.09002 * 109.46327 * 305.84653 * 10 9 8 34 34 H 1.08994 * 109.46867 * 65.81885 * 10 9 8 35 35 H 1.09001 * 109.50224 * 180.87825 * 11 10 9 36 36 H 1.09005 * 109.50702 * 60.75840 * 11 10 9 37 37 H 1.09000 * 109.52463 * 297.75465 * 12 11 10 38 38 H 1.09000 * 109.47000 * 185.31570 * 13 12 11 39 39 H 1.08991 * 109.47718 * 305.31821 * 13 12 11 40 40 H 0.96997 * 120.00186 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.50737 * 182.40263 * 22 12 11 42 42 H 1.09001 * 109.53672 * 62.30224 * 22 12 11 43 43 H 1.09005 * 109.46242 * 294.17328 * 23 9 8 44 44 H 1.08995 * 109.46730 * 54.15702 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 -0.0033 5 6 3.5927 -0.6640 0.0032 6 7 2.2942 -1.0973 0.0053 7 6 1.8427 -2.4909 0.0116 8 6 1.5658 -2.9437 -1.4234 9 7 1.1137 -4.3415 -1.4171 10 6 0.0998 -4.5619 -0.3780 11 6 -0.2403 -6.0522 -0.3033 12 6 -0.7664 -6.5194 -1.6633 13 6 -1.0509 -8.0218 -1.6127 14 6 -2.1757 -8.2879 -0.6457 15 1 -2.6408 -7.4674 -0.1195 16 6 -2.6109 -9.5787 -0.4328 17 7 -2.0449 -10.5777 -1.0738 18 14 -4.0047 -9.9084 0.7665 19 1 -5.3016 -9.8545 0.0451 20 1 -3.8300 -11.2537 1.3707 21 1 -3.9906 -8.8794 1.8370 22 6 0.2890 -6.2343 -2.7354 23 6 0.6138 -4.7387 -2.7396 24 1 -0.3633 0.0048 1.0277 25 1 -0.3634 0.8874 -0.5180 26 1 -0.3633 -0.8925 -0.5095 27 1 4.4098 1.3413 -0.0058 28 1 4.4777 -1.2829 0.0065 29 1 2.6169 -3.1216 0.4487 30 1 0.9299 -2.5745 0.6015 31 1 0.7917 -2.3131 -1.8604 32 1 2.4786 -2.8602 -2.0133 33 1 0.4881 -4.2294 0.5847 34 1 -0.7992 -3.9960 -0.6219 35 1 -1.0042 -6.2134 0.4573 36 1 0.6554 -6.6175 -0.0459 37 1 -1.6838 -5.9818 -1.9033 38 1 -1.3349 -8.3715 -2.6053 39 1 -0.1562 -8.5502 -1.2837 40 1 -2.3513 -11.4858 -0.9243 41 1 -0.0966 -6.5256 -3.7124 42 1 1.1932 -6.8024 -2.5169 43 1 -0.2877 -4.1720 -2.9724 44 1 1.3755 -4.5348 -3.4921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399297861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:13 Heat of formation + Delta-G solvation = 29.001538 kcal Electronic energy + Delta-G solvation = -21542.998718 eV Core-core repulsion = 18494.763823 eV Total energy + Delta-G solvation = -3048.234895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.04441 -40.22623 -36.86396 -35.14605 -33.91584 -32.62658 -31.82651 -30.56175 -28.60886 -27.66283 -25.89574 -24.46826 -23.41337 -22.29088 -22.05258 -20.55573 -20.41535 -18.44096 -18.10925 -16.99832 -16.52990 -16.34679 -16.04963 -15.67002 -15.21792 -15.11518 -14.76238 -14.69237 -14.28515 -14.10543 -13.90498 -13.69334 -13.59765 -13.28841 -13.19773 -12.98417 -12.88784 -12.62358 -12.45939 -12.24784 -12.16045 -11.99981 -11.65591 -11.24420 -10.96734 -10.92523 -10.72224 -10.54736 -10.47365 -9.31250 -9.27470 -8.16658 -6.26177 1.09376 1.40632 1.41147 1.51928 1.77745 2.17797 2.42219 2.95218 3.16901 3.61002 3.65570 3.72413 3.90980 4.03008 4.08568 4.10688 4.27636 4.37037 4.41257 4.49050 4.54901 4.61583 4.67338 4.68287 4.75931 4.78485 4.84731 4.88287 4.92933 5.03647 5.08684 5.16624 5.37650 5.39094 5.41749 5.48456 5.58960 5.81646 5.85596 5.90213 6.06948 6.08413 6.27391 6.30990 6.90728 7.15759 7.42487 8.95279 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.003176 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.730054 B = 8814.374091 C = 9276.676333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.191 3.809 3 N -0.534 5.534 4 C -0.056 4.056 5 C -0.052 4.052 6 N -0.453 5.453 7 C 0.102 3.898 8 C 0.052 3.948 9 N -0.538 5.538 10 C 0.055 3.945 11 C -0.095 4.095 12 C -0.076 4.076 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.062 0.938 16 C -0.003 4.003 17 N -0.937 5.937 18 Si 0.959 3.041 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.260 1.260 22 C -0.107 4.107 23 C 0.068 3.932 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.183 0.817 28 H 0.201 0.799 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.048 0.952 38 H -0.017 1.017 39 H -0.012 1.012 40 H 0.261 0.739 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.654 19.177 1.574 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 N -0.254 5.254 4 C -0.203 4.203 5 C -0.185 4.185 6 N -0.136 5.136 7 C -0.020 4.020 8 C -0.076 4.076 9 N -0.264 5.264 10 C -0.073 4.073 11 C -0.133 4.133 12 C -0.094 4.094 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.081 0.919 16 C -0.200 4.200 17 N -0.578 5.578 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.184 1.184 22 C -0.145 4.145 23 C -0.059 4.059 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.200 0.800 28 H 0.218 0.782 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.002 0.998 39 H 0.006 0.994 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.730 19.363 1.673 21.306 hybrid contribution -0.941 -1.184 0.103 1.515 sum 7.790 18.179 1.776 19.857 Atomic orbital electron populations 1.20296 0.83551 1.04524 1.04403 1.23778 0.96768 0.81501 1.05128 1.70209 1.03530 1.29749 1.21927 1.22680 0.94732 0.93957 1.08884 1.23210 0.87825 0.96831 1.10654 1.45542 1.06628 1.07553 1.53853 1.22152 1.03413 0.78268 0.98130 1.22322 1.00984 0.88177 0.96159 1.61983 1.39213 1.19670 1.05518 1.22266 0.93202 0.96070 0.95728 1.21429 0.99987 0.94930 0.96973 1.21095 0.96709 0.96247 0.95370 1.19010 0.94752 0.92072 0.94566 1.21664 1.17834 0.92621 1.24434 0.91948 1.25957 0.99573 0.96368 0.98128 1.70102 1.43711 0.99728 1.44219 0.85536 0.79229 0.77587 0.79252 1.20085 1.21135 1.18432 1.21595 0.98613 0.95808 0.98495 1.22014 0.98658 0.95083 0.90185 0.89110 0.89093 0.89938 0.79955 0.78212 0.86893 0.87654 0.94240 0.89942 0.88701 0.94394 0.92303 0.93086 0.93315 0.99837 0.99384 0.93005 0.92135 0.92543 0.94576 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.04 71.24 0.72 -0.33 16 2 C 0.19 4.05 7.90 138.13 1.09 5.14 16 3 N -0.53 -13.59 11.25 -188.13 -2.12 -15.71 16 4 C -0.06 -1.16 11.87 83.52 0.99 -0.17 16 5 C -0.05 -0.91 11.58 83.09 0.96 0.05 16 6 N -0.45 -8.23 2.75 -514.27 -1.41 -9.65 16 7 C 0.10 1.54 4.93 86.38 0.43 1.96 16 8 C 0.05 0.90 5.60 86.30 0.48 1.38 16 9 N -0.54 -12.11 4.81 -896.35 -4.31 -16.42 16 10 C 0.05 1.31 4.85 86.33 0.42 1.72 16 11 C -0.10 -3.22 5.15 30.65 0.16 -3.07 16 12 C -0.08 -2.93 2.20 -10.71 -0.02 -2.95 16 13 C 0.03 1.70 4.45 29.85 0.13 1.84 16 14 C -0.53 -29.09 8.45 25.60 0.22 -28.88 16 15 H 0.06 3.27 7.08 -2.91 -0.02 3.25 16 16 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 17 N -0.94 -56.94 13.29 21.45 0.28 -56.66 16 18 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 22 C -0.11 -3.45 5.38 30.65 0.16 -3.28 16 23 C 0.07 1.67 5.42 86.33 0.47 2.14 16 24 H 0.09 1.16 8.14 -2.38 -0.02 1.15 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.06 7.36 -2.38 -0.02 1.04 16 27 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.20 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.11 1.44 5.99 -2.39 -0.01 1.42 16 31 H 0.04 0.70 7.61 -2.39 -0.02 0.68 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.81 5.81 -2.39 -0.01 1.79 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 2.15 7.05 -2.39 -0.02 2.13 16 36 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 Total: -1.00 -68.80 347.36 2.09 -66.71 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.95 Total: 10.21 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 6.67 Total: -24.16 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -7.55 Total: -98.43 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.80 2.09 -66.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399297861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.711 kcal (2) G-P(sol) polarization free energy of solvation -68.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds