Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47157 * 2 1 4 4 C 1.35890 * 117.00118 * 180.02562 * 3 2 1 5 5 C 1.38756 * 120.05814 * 359.95504 * 4 3 2 6 6 C 1.38116 * 119.94735 * 180.02562 * 5 4 3 7 7 C 1.38287 * 120.05577 * 0.02562 * 6 5 4 8 8 C 1.38244 * 120.11321 * 0.02579 * 7 6 5 9 9 C 1.38165 * 120.05420 * 359.95751 * 8 7 6 10 10 C 1.50703 * 120.02812 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.46455 * 259.99589 * 10 9 8 12 12 C 1.46900 * 111.00182 * 66.04621 * 11 10 9 13 13 C 1.46905 * 110.99822 * 190.00115 * 11 10 9 14 14 H 1.08997 * 109.47100 * 190.59053 * 13 11 10 15 15 C 1.53008 * 109.46997 * 310.58524 * 13 11 10 16 16 C 1.53003 * 109.47258 * 70.58543 * 13 11 10 17 17 C 1.50694 * 109.47253 * 65.45304 * 16 13 11 18 18 H 1.08006 * 119.99992 * 354.73752 * 17 16 13 19 19 C 1.37868 * 120.00438 * 174.73053 * 17 16 13 20 20 N 1.31514 * 119.99717 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00474 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46917 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46828 * 120.00069 * 21 19 17 24 24 H 1.48497 * 109.47372 * 240.00122 * 21 19 17 25 25 H 1.08993 * 109.46962 * 299.99806 * 1 2 3 26 26 H 1.08994 * 109.47203 * 60.00320 * 1 2 3 27 27 H 1.09005 * 109.47082 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46538 * 240.00162 * 2 1 3 29 29 H 1.08996 * 109.46949 * 120.00161 * 2 1 3 30 30 H 1.07998 * 120.02575 * 0.04588 * 5 4 3 31 31 H 1.07998 * 119.97209 * 180.30081 * 6 5 4 32 32 H 1.08002 * 119.94470 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.97217 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.47224 * 19.99568 * 10 9 8 35 35 H 1.08999 * 109.47294 * 140.00241 * 10 9 8 36 36 H 1.09001 * 109.46993 * 54.75122 * 12 11 10 37 37 H 1.09006 * 109.47124 * 174.74343 * 12 11 10 38 38 H 1.08994 * 109.47123 * 294.75235 * 12 11 10 39 39 H 1.09000 * 109.46689 * 300.00377 * 15 13 11 40 40 H 1.09000 * 109.46682 * 59.99804 * 15 13 11 41 41 H 1.08992 * 109.47122 * 179.97438 * 15 13 11 42 42 H 1.08998 * 109.47110 * 185.45707 * 16 13 11 43 43 H 1.09004 * 109.46664 * 305.45511 * 16 13 11 44 44 H 0.96999 * 120.00285 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.2000 0.4258 -0.0001 6 6 5.5688 0.6094 -0.0001 7 6 6.0962 1.8878 0.0000 8 6 5.2551 2.9850 0.0006 9 6 3.8850 2.8066 0.0003 10 6 2.9688 4.0031 0.0004 11 7 2.4798 4.2451 1.3644 12 6 3.5780 4.6457 2.2540 13 6 1.4063 5.2479 1.3686 14 1 1.1921 5.5465 2.3947 15 6 1.8482 6.4714 0.5631 16 6 0.1471 4.6497 0.7380 17 6 -0.3647 3.5283 1.6049 18 1 0.2015 3.2118 2.4685 19 6 -1.5557 2.9065 1.2958 20 7 -2.2449 3.2916 0.2440 21 14 -2.1897 1.5159 2.3699 22 1 -1.2358 1.2753 3.4823 23 1 -3.5157 1.8859 2.9269 24 1 -2.3220 0.2816 1.5549 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.7886 -0.5728 -0.0001 31 1 6.2280 -0.2461 -0.0047 32 1 7.1669 2.0293 -0.0005 33 1 5.6694 3.9824 0.0011 34 1 3.5146 4.8788 -0.3506 35 1 2.1230 3.8131 -0.6603 36 1 4.0933 5.5075 1.8297 37 1 3.1756 4.9086 3.2323 38 1 4.2799 3.8187 2.3599 39 1 2.7453 6.8975 1.0123 40 1 2.0624 6.1728 -0.4631 41 1 1.0515 7.2153 0.5658 42 1 -0.6181 5.4212 0.6526 43 1 0.3855 4.2632 -0.2529 44 1 -3.0831 2.8544 0.0267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411176944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = -9.892870 kcal Electronic energy + Delta-G solvation = -23080.660799 eV Core-core repulsion = 19998.446565 eV Total energy + Delta-G solvation = -3082.214234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91561 -37.75308 -36.87317 -33.03184 -31.82961 -31.20306 -30.01962 -29.17898 -27.17927 -26.42719 -24.00425 -23.57885 -22.46339 -21.26641 -20.84185 -18.67582 -17.61740 -16.07875 -15.81442 -15.58772 -15.53727 -14.75042 -14.56671 -14.23308 -13.90002 -13.74286 -13.07696 -12.84165 -12.70884 -12.34300 -12.13590 -12.01573 -11.85189 -11.61239 -11.59364 -11.39509 -11.27339 -11.14831 -10.82135 -10.55051 -10.51776 -10.34542 -10.20111 -9.99625 -9.85879 -9.11328 -8.85575 -8.59342 -8.15673 -7.70770 -7.32400 -5.78309 -3.72391 1.57858 1.78639 3.35519 3.46314 3.51560 3.75534 4.02248 4.61130 4.85655 5.03474 5.09628 5.28486 5.39932 5.45073 5.52224 5.58905 5.67744 5.71490 5.78053 5.83779 5.85015 5.89454 5.96498 6.09335 6.14861 6.18572 6.19591 6.39548 6.45819 6.47677 6.59176 6.64127 6.69912 6.73164 6.85938 6.93098 7.10120 7.13212 7.64970 7.80885 7.97507 8.04283 8.16268 8.23321 8.72409 9.31920 9.86426 11.34374 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.008037 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.896701 B = 3483.150172 C = 4837.134781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.271 6.271 4 C 0.161 3.839 5 C -0.222 4.222 6 C -0.086 4.086 7 C -0.172 4.172 8 C -0.080 4.080 9 C -0.105 4.105 10 C 0.105 3.895 11 N -0.504 5.504 12 C 0.025 3.975 13 C 0.085 3.915 14 H 0.068 0.932 15 C -0.183 4.183 16 C 0.033 3.967 17 C -0.469 4.469 18 H 0.058 0.942 19 C 0.055 3.945 20 N -0.904 5.904 21 Si 0.871 3.129 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.281 1.281 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.030 0.970 35 H 0.094 0.906 36 H 0.012 0.988 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.600 -3.246 -1.410 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.182 6.182 4 C 0.114 3.886 5 C -0.241 4.241 6 C -0.105 4.105 7 C -0.190 4.190 8 C -0.099 4.099 9 C -0.106 4.106 10 C -0.023 4.023 11 N -0.226 5.226 12 C -0.124 4.124 13 C -0.022 4.022 14 H 0.087 0.913 15 C -0.242 4.242 16 C -0.004 4.004 17 C -0.508 4.508 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.546 5.546 21 Si 0.701 3.299 22 H -0.199 1.199 23 H -0.220 1.220 24 H -0.208 1.208 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.048 0.952 35 H 0.112 0.888 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.055 -3.585 -1.307 13.601 hybrid contribution 0.060 -0.391 0.305 0.500 sum 13.116 -3.976 -1.003 13.742 Atomic orbital electron populations 1.21875 0.92268 1.01330 1.05524 1.22698 0.96497 0.82396 0.99757 1.86468 1.17213 1.27863 1.86659 1.18931 0.83455 0.93153 0.93096 1.21234 0.94376 0.98046 1.10399 1.20795 0.94247 0.96944 0.98486 1.20857 0.99170 0.92576 1.06388 1.20835 0.91985 0.98615 0.98466 1.19288 0.93507 0.93009 1.04818 1.20873 0.96971 0.92205 0.92219 1.62085 1.08490 1.44765 1.07297 1.22383 0.94539 0.98148 0.97287 1.21988 0.93174 0.87957 0.99122 0.91347 1.22535 1.00360 1.00300 1.01016 1.19165 0.89539 0.95712 0.96015 1.21125 1.03676 1.15552 1.10461 0.92385 1.24875 0.97163 0.97062 0.95193 1.69963 1.15260 1.42485 1.26924 0.86991 0.78577 0.83318 0.81052 1.19868 1.22042 1.20762 0.90258 0.91051 0.91809 0.93204 0.92922 0.85962 0.86616 0.86675 0.86267 0.95250 0.88757 0.96915 0.92237 0.92372 0.94326 0.92899 0.92606 0.96274 0.96486 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.19 37.16 0.38 -2.50 16 2 C 0.06 1.05 5.46 37.16 0.20 1.26 16 3 O -0.27 -5.49 9.37 -19.39 -0.18 -5.67 16 4 C 0.16 2.89 6.66 -39.21 -0.26 2.63 16 5 C -0.22 -3.33 9.04 -39.43 -0.36 -3.69 16 6 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 16 7 C -0.17 -2.21 10.04 -39.56 -0.40 -2.61 16 8 C -0.08 -1.15 8.88 -39.61 -0.35 -1.50 16 9 C -0.11 -1.80 4.59 -104.47 -0.48 -2.28 16 10 C 0.10 1.93 3.55 -4.97 -0.02 1.92 16 11 N -0.50 -9.91 4.39 -236.32 -1.04 -10.95 16 12 C 0.03 0.42 8.88 60.06 0.53 0.95 16 13 C 0.09 1.77 2.23 -67.70 -0.15 1.62 16 14 H 0.07 1.45 7.85 -51.93 -0.41 1.05 16 15 C -0.18 -3.22 8.38 37.16 0.31 -2.91 16 16 C 0.03 0.83 4.45 -27.88 -0.12 0.71 16 17 C -0.47 -13.02 8.85 -34.45 -0.30 -13.33 16 18 H 0.06 1.66 7.75 -52.48 -0.41 1.25 16 19 C 0.06 1.55 5.23 -17.82 -0.09 1.46 16 20 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 21 Si 0.87 21.62 26.66 -169.99 -4.53 17.09 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.28 -6.63 6.75 56.52 0.38 -6.25 16 25 H 0.08 1.75 4.01 -51.93 -0.21 1.54 16 26 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.71 7.66 -51.93 -0.40 0.32 16 29 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 30 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.48 8.04 -52.49 -0.42 1.06 16 34 H 0.03 0.49 6.65 -51.93 -0.35 0.15 16 35 H 0.09 2.01 5.96 -51.93 -0.31 1.70 16 36 H 0.01 0.19 7.12 -51.93 -0.37 -0.18 16 37 H 0.06 0.97 7.89 -51.93 -0.41 0.56 16 38 H 0.06 0.94 6.97 -51.93 -0.36 0.58 16 39 H 0.04 0.60 7.08 -51.93 -0.37 0.23 16 40 H 0.05 0.92 6.53 -51.93 -0.34 0.58 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.46 6.36 -51.93 -0.33 0.13 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -30.04 341.97 -8.47 -38.51 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.10 Total: 1.64 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.51 Total: -19.79 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.30 Total: -36.94 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.18 Total: -5.67 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.53 Total: 17.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.04 -8.47 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411176944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.617 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds