Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47157 * 2 1 4 4 C 1.35890 * 117.00118 * 180.02562 * 3 2 1 5 5 C 1.38756 * 120.05814 * 359.95504 * 4 3 2 6 6 C 1.38116 * 119.94735 * 180.02562 * 5 4 3 7 7 C 1.38287 * 120.05577 * 0.02562 * 6 5 4 8 8 C 1.38244 * 120.11321 * 0.02579 * 7 6 5 9 9 C 1.38165 * 120.05420 * 359.95751 * 8 7 6 10 10 C 1.50703 * 120.02812 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.46455 * 259.99589 * 10 9 8 12 12 C 1.46900 * 111.00182 * 66.04621 * 11 10 9 13 13 C 1.46905 * 110.99822 * 190.00115 * 11 10 9 14 14 H 1.08997 * 109.47100 * 190.59053 * 13 11 10 15 15 C 1.53008 * 109.46997 * 310.58524 * 13 11 10 16 16 C 1.53003 * 109.47258 * 70.58543 * 13 11 10 17 17 C 1.50694 * 109.47253 * 65.45304 * 16 13 11 18 18 H 1.08006 * 119.99992 * 354.73752 * 17 16 13 19 19 C 1.37868 * 120.00438 * 174.73053 * 17 16 13 20 20 N 1.31514 * 119.99717 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00474 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46917 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46828 * 120.00069 * 21 19 17 24 24 H 1.48497 * 109.47372 * 240.00122 * 21 19 17 25 25 H 1.08993 * 109.46962 * 299.99806 * 1 2 3 26 26 H 1.08994 * 109.47203 * 60.00320 * 1 2 3 27 27 H 1.09005 * 109.47082 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46538 * 240.00162 * 2 1 3 29 29 H 1.08996 * 109.46949 * 120.00161 * 2 1 3 30 30 H 1.07998 * 120.02575 * 0.04588 * 5 4 3 31 31 H 1.07998 * 119.97209 * 180.30081 * 6 5 4 32 32 H 1.08002 * 119.94470 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.97217 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.47224 * 19.99568 * 10 9 8 35 35 H 1.08999 * 109.47294 * 140.00241 * 10 9 8 36 36 H 1.09001 * 109.46993 * 54.75122 * 12 11 10 37 37 H 1.09006 * 109.47124 * 174.74343 * 12 11 10 38 38 H 1.08994 * 109.47123 * 294.75235 * 12 11 10 39 39 H 1.09000 * 109.46689 * 300.00377 * 15 13 11 40 40 H 1.09000 * 109.46682 * 59.99804 * 15 13 11 41 41 H 1.08992 * 109.47122 * 179.97438 * 15 13 11 42 42 H 1.08998 * 109.47110 * 185.45707 * 16 13 11 43 43 H 1.09004 * 109.46664 * 305.45511 * 16 13 11 44 44 H 0.96999 * 120.00285 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.2000 0.4258 -0.0001 6 6 5.5688 0.6094 -0.0001 7 6 6.0962 1.8878 0.0000 8 6 5.2551 2.9850 0.0006 9 6 3.8850 2.8066 0.0003 10 6 2.9688 4.0031 0.0004 11 7 2.4798 4.2451 1.3644 12 6 3.5780 4.6457 2.2540 13 6 1.4063 5.2479 1.3686 14 1 1.1921 5.5465 2.3947 15 6 1.8482 6.4714 0.5631 16 6 0.1471 4.6497 0.7380 17 6 -0.3647 3.5283 1.6049 18 1 0.2015 3.2118 2.4685 19 6 -1.5557 2.9065 1.2958 20 7 -2.2449 3.2916 0.2440 21 14 -2.1897 1.5159 2.3699 22 1 -1.2358 1.2753 3.4823 23 1 -3.5157 1.8859 2.9269 24 1 -2.3220 0.2816 1.5549 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.7886 -0.5728 -0.0001 31 1 6.2280 -0.2461 -0.0047 32 1 7.1669 2.0293 -0.0005 33 1 5.6694 3.9824 0.0011 34 1 3.5146 4.8788 -0.3506 35 1 2.1230 3.8131 -0.6603 36 1 4.0933 5.5075 1.8297 37 1 3.1756 4.9086 3.2323 38 1 4.2799 3.8187 2.3599 39 1 2.7453 6.8975 1.0123 40 1 2.0624 6.1728 -0.4631 41 1 1.0515 7.2153 0.5658 42 1 -0.6181 5.4212 0.6526 43 1 0.3855 4.2632 -0.2529 44 1 -3.0831 2.8544 0.0267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411176944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = -28.160398 kcal Electronic energy + Delta-G solvation = -23081.452938 eV Core-core repulsion = 19998.446565 eV Total energy + Delta-G solvation = -3083.006374 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14855 -39.25161 -38.13852 -35.00241 -33.35348 -32.61370 -31.47385 -30.41000 -29.05893 -27.74276 -25.63064 -24.87977 -24.28972 -22.49197 -22.14344 -20.26422 -18.86774 -18.24947 -17.17884 -16.92752 -16.80074 -16.49028 -16.06521 -15.67402 -15.20092 -15.11690 -14.53133 -14.35116 -14.12622 -13.84131 -13.62421 -13.59374 -13.39820 -13.18653 -13.02422 -12.92910 -12.61065 -12.51189 -12.44847 -12.34645 -12.10470 -11.92848 -11.72760 -11.48915 -11.41570 -11.00485 -10.98679 -10.38123 -9.71734 -8.92706 -8.77613 -7.99743 -6.00301 0.46953 0.66103 1.36102 1.40004 1.50671 2.50662 2.51942 2.87181 3.32077 3.47510 3.90150 3.96535 4.07600 4.14613 4.23934 4.27338 4.36605 4.40449 4.41030 4.51692 4.53501 4.64443 4.67363 4.69591 4.77943 4.84018 4.93935 4.95198 5.06889 5.09346 5.22737 5.23765 5.30629 5.32278 5.55149 5.56632 5.63065 5.69088 5.80003 5.98917 6.05350 6.40883 6.53096 6.63920 6.76918 7.09373 7.62956 9.13272 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.008037 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.896701 B = 3483.150172 C = 4837.134781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.313 6.313 4 C 0.127 3.873 5 C -0.226 4.226 6 C -0.082 4.082 7 C -0.163 4.163 8 C -0.079 4.079 9 C -0.130 4.130 10 C 0.117 3.883 11 N -0.527 5.527 12 C 0.031 3.969 13 C 0.092 3.908 14 H 0.062 0.938 15 C -0.172 4.172 16 C 0.043 3.957 17 C -0.475 4.475 18 H 0.046 0.954 19 C 0.014 3.986 20 N -0.938 5.938 21 Si 0.926 3.074 22 H -0.273 1.273 23 H -0.294 1.294 24 H -0.262 1.262 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.136 0.864 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.055 0.945 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.720 -4.356 -0.797 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.226 6.226 4 C 0.081 3.919 5 C -0.244 4.244 6 C -0.100 4.100 7 C -0.181 4.181 8 C -0.097 4.097 9 C -0.131 4.131 10 C -0.011 4.011 11 N -0.250 5.250 12 C -0.117 4.117 13 C -0.016 4.016 14 H 0.080 0.920 15 C -0.231 4.231 16 C 0.006 3.994 17 C -0.513 4.513 18 H 0.065 0.935 19 C -0.182 4.182 20 N -0.581 5.581 21 Si 0.754 3.246 22 H -0.197 1.197 23 H -0.222 1.222 24 H -0.187 1.187 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.198 -4.700 -0.693 16.881 hybrid contribution -0.826 -0.066 0.091 0.833 sum 15.373 -4.766 -0.602 16.106 Atomic orbital electron populations 1.21867 0.94077 1.02495 1.02439 1.22773 0.95041 0.81911 1.01616 1.86406 1.19155 1.29461 1.87612 1.19283 0.82881 0.94527 0.95235 1.21463 0.95155 0.97814 1.10008 1.21241 0.93719 0.98438 0.96597 1.21290 1.00762 0.91893 1.04147 1.21074 0.90709 1.00353 0.97566 1.19357 0.94590 0.92179 1.06972 1.20649 0.95855 0.93771 0.90783 1.61935 1.09577 1.44880 1.08625 1.22349 0.93589 0.99143 0.96589 1.21679 0.92015 0.89297 0.98578 0.91991 1.22383 1.01490 0.98718 1.00467 1.18963 0.91231 0.94400 0.94777 1.21260 1.03706 1.16145 1.10194 0.93538 1.25505 0.97350 0.99115 0.96209 1.70086 1.15669 1.43808 1.28510 0.86117 0.77523 0.81392 0.79602 1.19748 1.22162 1.18737 0.93681 0.93540 0.88492 0.90584 0.91516 0.84596 0.83198 0.83190 0.84262 0.93601 0.93100 0.94733 0.92252 0.91828 0.91478 0.93148 0.92576 0.99165 0.99217 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.78 10.19 71.98 0.73 -5.05 16 2 C 0.06 2.08 5.46 71.98 0.39 2.47 16 3 O -0.31 -13.13 9.37 -92.31 -0.87 -14.00 16 4 C 0.13 4.53 6.66 22.51 0.15 4.68 16 5 C -0.23 -6.30 9.04 22.36 0.20 -6.09 16 6 C -0.08 -1.81 10.04 22.25 0.22 -1.59 16 7 C -0.16 -3.49 10.04 22.28 0.22 -3.26 16 8 C -0.08 -2.02 8.88 22.25 0.20 -1.82 16 9 C -0.13 -4.37 4.59 -19.77 -0.09 -4.46 16 10 C 0.12 4.38 3.55 85.56 0.30 4.68 16 11 N -0.53 -20.90 4.39 -901.59 -3.96 -24.86 16 12 C 0.03 0.98 8.88 127.69 1.13 2.12 16 13 C 0.09 3.94 2.23 44.92 0.10 4.04 16 14 H 0.06 2.68 7.85 -2.39 -0.02 2.67 16 15 C -0.17 -5.97 8.38 71.98 0.60 -5.37 16 16 C 0.04 2.34 4.45 29.85 0.13 2.48 16 17 C -0.47 -27.55 8.85 25.60 0.23 -27.32 16 18 H 0.05 2.76 7.75 -2.91 -0.02 2.73 16 19 C 0.01 0.80 5.23 84.65 0.44 1.24 16 20 N -0.94 -57.79 13.29 21.44 0.28 -57.51 16 21 Si 0.93 45.62 26.66 68.60 1.83 47.45 16 22 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 24 H -0.26 -11.99 6.75 99.48 0.67 -11.32 16 25 H 0.04 2.01 4.01 -2.39 -0.01 2.00 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 28 H 0.08 2.11 7.66 -2.38 -0.02 2.09 16 29 H 0.07 2.01 7.66 -2.39 -0.02 1.99 16 30 H 0.14 3.28 6.30 -2.91 -0.02 3.26 16 31 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 33 H 0.14 2.94 8.04 -2.91 -0.02 2.91 16 34 H 0.05 1.51 6.65 -2.39 -0.02 1.49 16 35 H 0.05 2.33 5.96 -2.39 -0.01 2.31 16 36 H 0.03 0.93 7.12 -2.39 -0.02 0.91 16 37 H 0.06 1.84 7.89 -2.38 -0.02 1.82 16 38 H 0.06 1.93 6.97 -2.39 -0.02 1.91 16 39 H 0.07 1.95 7.08 -2.39 -0.02 1.93 16 40 H 0.05 1.76 6.53 -2.39 -0.02 1.75 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H -0.01 -0.61 6.36 -2.38 -0.02 -0.63 16 44 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -69.11 341.97 3.19 -65.92 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.93 Total: 16.26 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 4.98 Total: -33.25 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.68 Total: -82.37 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.87 Total: -14.00 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.83 Total: 47.45 kcal Total: -69.11 3.19 -65.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411176944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.756 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds