Wall clock time and date at job start Mon Mar 30 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00110 * 2 1 4 4 C 1.52995 * 109.47030 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47168 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47296 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47119 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47094 * 54.99695 * 7 6 5 9 9 N 1.46906 * 109.47092 * 295.00039 * 7 6 5 10 10 C 1.46901 * 110.99793 * 155.00227 * 9 7 6 11 11 C 1.50701 * 109.46921 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.50702 * 109.46896 * 175.00111 * 7 6 5 20 20 C 1.38229 * 119.99899 * 79.73114 * 19 7 6 21 21 C 1.38242 * 119.99794 * 179.78777 * 20 19 7 22 22 C 1.38236 * 119.99808 * 0.43793 * 21 20 19 23 23 C 1.38236 * 120.00036 * 359.81168 * 22 21 20 24 24 C 1.38235 * 119.99543 * 259.99790 * 19 7 6 25 25 H 1.09001 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47140 * 300.00110 * 1 2 3 27 27 H 1.08996 * 109.46988 * 60.00059 * 1 2 3 28 28 H 1.08998 * 109.46993 * 59.99979 * 3 2 1 29 29 H 1.08995 * 109.46836 * 299.99541 * 3 2 1 30 30 H 1.08999 * 109.47332 * 59.99594 * 4 3 2 31 31 H 1.09004 * 109.46894 * 299.99779 * 4 3 2 32 32 H 1.08999 * 109.47305 * 59.99602 * 5 4 3 33 33 H 1.09004 * 109.47053 * 299.99706 * 5 4 3 34 34 H 1.08998 * 109.47091 * 60.00180 * 6 5 4 35 35 H 1.08995 * 109.46967 * 299.99602 * 6 5 4 36 36 H 1.00898 * 110.99995 * 278.95304 * 9 7 6 37 37 H 1.09002 * 109.47401 * 59.99808 * 10 9 7 38 38 H 1.09001 * 109.46874 * 299.99821 * 10 9 7 39 39 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 40 40 H 1.07997 * 120.00313 * 359.97438 * 20 19 7 41 41 H 1.08000 * 120.00004 * 180.26719 * 21 20 19 42 42 H 1.08005 * 120.00061 * 179.83506 * 22 21 20 43 43 H 1.08000 * 120.00095 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.00412 * 359.97438 * 24 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5822 0.0000 6 6 5.6830 2.4614 0.0013 7 6 6.3054 3.8591 0.0000 8 1 5.9140 4.4319 0.8408 9 7 5.9707 4.5430 -1.2564 10 6 6.0071 6.0018 -1.0875 11 6 5.6600 6.6675 -2.3942 12 1 5.4345 6.0670 -3.2631 13 6 5.6294 8.0433 -2.4803 14 7 5.9035 8.7745 -1.4221 15 14 5.1984 8.8684 -4.0997 16 1 3.7302 9.0792 -4.1726 17 1 5.8916 10.1788 -4.1876 18 1 5.6307 8.0033 -5.2266 19 6 7.8026 3.7424 0.1251 20 6 8.5668 3.4330 -0.9844 21 6 9.9407 3.3303 -0.8706 22 6 10.5494 3.5280 0.3547 23 6 9.7846 3.8323 1.4653 24 6 8.4112 3.9393 1.3505 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8574 0.6434 -0.8891 31 1 3.8566 0.6438 0.8909 32 1 3.8358 3.1238 0.8895 33 1 3.8365 3.1226 -0.8905 34 1 6.0053 1.9198 -0.8880 35 1 6.0039 1.9213 0.8920 36 1 6.5840 4.2499 -2.0021 37 1 7.0070 6.3071 -0.7790 38 1 5.2857 6.2975 -0.3258 39 1 5.8823 9.7424 -1.4828 40 1 8.0909 3.2746 -1.9409 41 1 10.5382 3.0928 -1.7384 42 1 11.6225 3.4452 0.4442 43 1 10.2602 3.9872 2.4225 44 1 7.8138 4.1772 2.2182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411657893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:49 Heat of formation + Delta-G solvation = -43.691453 kcal Electronic energy + Delta-G solvation = -21059.605529 eV Core-core repulsion = 17975.925678 eV Total energy + Delta-G solvation = -3083.679851 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.32024 -38.01896 -36.35035 -34.12026 -32.67513 -30.80769 -30.41837 -29.44319 -26.97725 -26.02086 -24.38462 -22.59808 -22.23880 -21.45480 -20.78844 -19.80881 -16.95435 -16.29337 -16.24042 -16.20884 -15.21873 -15.07554 -14.95621 -14.55011 -14.41313 -13.91626 -13.35507 -13.33717 -13.06508 -12.76859 -12.33823 -12.22108 -12.10962 -11.81920 -11.44219 -11.35609 -11.27377 -11.04857 -10.86936 -10.80843 -10.62588 -10.44344 -10.34862 -10.21367 -9.89000 -9.70248 -9.17375 -8.64431 -8.50147 -8.35484 -7.32389 -6.02115 -4.03934 1.65450 1.67829 3.32060 3.37969 3.41511 3.71444 4.07948 4.43405 4.95711 5.03759 5.10188 5.11579 5.21547 5.22359 5.25620 5.30344 5.34043 5.37378 5.42463 5.50549 5.57253 5.59431 5.76583 5.80660 5.87976 5.94000 6.07983 6.13670 6.22696 6.29457 6.33838 6.36203 6.62236 6.73171 6.75321 6.80661 6.93227 7.11697 7.27005 7.29887 7.47856 7.78898 8.13829 8.37580 8.61045 9.05246 9.60802 11.08909 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.005269 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.041947 B = 5313.174222 C = 8075.532845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.397 6.397 3 C 0.059 3.941 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.094 4.094 7 C 0.120 3.880 8 H 0.079 0.921 9 N -0.676 5.676 10 C 0.195 3.805 11 C -0.513 4.513 12 H 0.061 0.939 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.093 4.093 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.116 4.116 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.329 0.671 37 H -0.012 1.012 38 H 0.026 0.974 39 H 0.261 0.739 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 -14.780 5.148 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.316 6.316 3 C -0.017 4.017 4 C -0.154 4.154 5 C -0.147 4.147 6 C -0.132 4.132 7 C 0.009 3.991 8 H 0.097 0.903 9 N -0.306 5.306 10 C 0.068 3.932 11 C -0.552 4.552 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.095 4.095 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.151 4.151 23 C -0.140 4.140 24 C -0.134 4.134 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.006 0.994 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.931 -14.777 5.288 15.723 hybrid contribution 0.604 1.146 -0.717 1.480 sum -0.327 -13.631 4.572 14.381 Atomic orbital electron populations 1.22707 0.81422 1.02372 0.99987 1.87853 1.19435 1.28834 1.95461 1.22640 0.94674 0.84010 1.00369 1.21554 0.92420 0.98718 1.02664 1.21406 0.94940 0.94848 1.03489 1.21478 0.94951 0.95683 1.01118 1.20681 0.87434 0.95345 0.95671 0.90297 1.60923 1.56330 1.09736 1.03649 1.19560 0.95315 0.80812 0.97467 1.21174 1.46577 0.91109 0.96343 0.92064 1.24969 0.95466 0.97421 0.96605 1.69965 1.49393 1.05443 1.28838 0.86519 0.78449 0.78718 0.83829 1.20657 1.21348 1.19876 1.20916 0.98042 0.97169 0.93354 1.20975 0.93787 0.99785 0.98519 1.21076 0.94776 1.00455 0.97364 1.21043 0.99363 1.01471 0.93205 1.21078 0.94089 1.00431 0.98412 1.21060 0.94668 1.00422 0.97289 0.89951 0.94236 0.94089 0.93430 0.93002 0.91414 0.91840 0.92473 0.89715 0.92105 0.92659 0.85206 0.99431 0.95572 0.92972 0.85997 0.86458 0.86684 0.86593 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.40 -5.05 10.70 -35.23 -0.38 -5.43 16 3 C 0.06 0.72 5.94 37.16 0.22 0.94 16 4 C -0.12 -1.43 5.58 -26.74 -0.15 -1.58 16 5 C -0.11 -1.51 5.10 -26.73 -0.14 -1.65 16 6 C -0.09 -1.34 4.87 -26.73 -0.13 -1.47 16 7 C 0.12 2.05 2.22 -68.86 -0.15 1.90 16 8 H 0.08 1.44 7.66 -51.93 -0.40 1.04 16 9 N -0.68 -13.84 5.68 -109.21 -0.62 -14.46 16 10 C 0.20 5.03 5.23 -4.97 -0.03 5.01 16 11 C -0.51 -14.41 9.32 -34.44 -0.32 -14.73 16 12 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 15 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.09 -1.54 4.71 -104.63 -0.49 -2.03 16 20 C -0.11 -1.79 9.11 -39.58 -0.36 -2.15 16 21 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 22 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 23 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 24 C -0.12 -1.79 9.67 -39.58 -0.38 -2.17 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.33 6.57 6.35 -39.29 -0.25 6.32 16 37 H -0.01 -0.34 8.00 -51.93 -0.42 -0.76 16 38 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.12 1.87 6.53 -52.49 -0.34 1.52 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.65 8.04 -52.49 -0.42 1.23 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -30.67 362.99 -9.61 -40.28 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.69 Total: 4.97 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -2.11 Total: -21.41 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.12 Total: -40.57 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.38 Total: -5.43 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.67 -9.61 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411657893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.409 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds