Wall clock time and date at job start Mon Mar 30 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00110 * 2 1 4 4 C 1.52995 * 109.47030 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47168 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47296 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47119 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47094 * 54.99695 * 7 6 5 9 9 N 1.46906 * 109.47092 * 295.00039 * 7 6 5 10 10 C 1.46901 * 110.99793 * 155.00227 * 9 7 6 11 11 C 1.50701 * 109.46921 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.50702 * 109.46896 * 175.00111 * 7 6 5 20 20 C 1.38229 * 119.99899 * 79.73114 * 19 7 6 21 21 C 1.38242 * 119.99794 * 179.78777 * 20 19 7 22 22 C 1.38236 * 119.99808 * 0.43793 * 21 20 19 23 23 C 1.38236 * 120.00036 * 359.81168 * 22 21 20 24 24 C 1.38235 * 119.99543 * 259.99790 * 19 7 6 25 25 H 1.09001 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47140 * 300.00110 * 1 2 3 27 27 H 1.08996 * 109.46988 * 60.00059 * 1 2 3 28 28 H 1.08998 * 109.46993 * 59.99979 * 3 2 1 29 29 H 1.08995 * 109.46836 * 299.99541 * 3 2 1 30 30 H 1.08999 * 109.47332 * 59.99594 * 4 3 2 31 31 H 1.09004 * 109.46894 * 299.99779 * 4 3 2 32 32 H 1.08999 * 109.47305 * 59.99602 * 5 4 3 33 33 H 1.09004 * 109.47053 * 299.99706 * 5 4 3 34 34 H 1.08998 * 109.47091 * 60.00180 * 6 5 4 35 35 H 1.08995 * 109.46967 * 299.99602 * 6 5 4 36 36 H 1.00898 * 110.99995 * 278.95304 * 9 7 6 37 37 H 1.09002 * 109.47401 * 59.99808 * 10 9 7 38 38 H 1.09001 * 109.46874 * 299.99821 * 10 9 7 39 39 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 40 40 H 1.07997 * 120.00313 * 359.97438 * 20 19 7 41 41 H 1.08000 * 120.00004 * 180.26719 * 21 20 19 42 42 H 1.08005 * 120.00061 * 179.83506 * 22 21 20 43 43 H 1.08000 * 120.00095 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.00412 * 359.97438 * 24 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5822 0.0000 6 6 5.6830 2.4614 0.0013 7 6 6.3054 3.8591 0.0000 8 1 5.9140 4.4319 0.8408 9 7 5.9707 4.5430 -1.2564 10 6 6.0071 6.0018 -1.0875 11 6 5.6600 6.6675 -2.3942 12 1 5.4345 6.0670 -3.2631 13 6 5.6294 8.0433 -2.4803 14 7 5.9035 8.7745 -1.4221 15 14 5.1984 8.8684 -4.0997 16 1 3.7302 9.0792 -4.1726 17 1 5.8916 10.1788 -4.1876 18 1 5.6307 8.0033 -5.2266 19 6 7.8026 3.7424 0.1251 20 6 8.5668 3.4330 -0.9844 21 6 9.9407 3.3303 -0.8706 22 6 10.5494 3.5280 0.3547 23 6 9.7846 3.8323 1.4653 24 6 8.4112 3.9393 1.3505 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8574 0.6434 -0.8891 31 1 3.8566 0.6438 0.8909 32 1 3.8358 3.1238 0.8895 33 1 3.8365 3.1226 -0.8905 34 1 6.0053 1.9198 -0.8880 35 1 6.0039 1.9213 0.8920 36 1 6.5840 4.2499 -2.0021 37 1 7.0070 6.3071 -0.7790 38 1 5.2857 6.2975 -0.3258 39 1 5.8823 9.7424 -1.4828 40 1 8.0909 3.2746 -1.9409 41 1 10.5382 3.0928 -1.7384 42 1 11.6225 3.4452 0.4442 43 1 10.2602 3.9872 2.4225 44 1 7.8138 4.1772 2.2182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411657893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:48 Heat of formation + Delta-G solvation = -61.244840 kcal Electronic energy + Delta-G solvation = -21060.366701 eV Core-core repulsion = 17975.925678 eV Total energy + Delta-G solvation = -3084.441023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55110 -38.94799 -37.70143 -35.62641 -34.47905 -32.25146 -31.71249 -30.54174 -28.45350 -27.31447 -25.66836 -24.04386 -23.41843 -23.07781 -21.89066 -21.15675 -18.61001 -17.88771 -17.23135 -17.19423 -16.77721 -16.22190 -16.19280 -15.99664 -15.52897 -15.34733 -14.81091 -14.63303 -14.21918 -14.09393 -13.97667 -13.58836 -13.41626 -13.21335 -12.86885 -12.71669 -12.70345 -12.32654 -12.26410 -12.15018 -11.94417 -11.84891 -11.71063 -11.59258 -11.39307 -11.22357 -10.65127 -10.60254 -9.79721 -9.57388 -9.08414 -8.21061 -6.31844 0.49000 0.52473 1.40724 1.42193 1.53272 2.40156 2.82147 2.93287 3.12545 3.60921 3.77400 4.01120 4.06289 4.14950 4.16771 4.29208 4.30955 4.35595 4.50391 4.52927 4.56214 4.59351 4.68073 4.74481 4.76209 4.83740 4.95112 5.03594 5.08015 5.11728 5.13725 5.18281 5.20116 5.35258 5.46228 5.58621 5.60177 5.62232 5.63531 5.73754 6.05450 6.15705 6.24453 6.47560 6.74525 6.91750 7.39018 8.90437 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.005269 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.041947 B = 5313.174222 C = 8075.532845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.417 6.417 3 C 0.059 3.941 4 C -0.107 4.107 5 C -0.103 4.103 6 C -0.083 4.083 7 C 0.122 3.878 8 H 0.061 0.939 9 N -0.669 5.669 10 C 0.216 3.784 11 C -0.533 4.533 12 H 0.064 0.936 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.969 3.031 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.263 1.263 19 C -0.114 4.114 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.134 4.134 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.333 0.667 37 H -0.045 1.045 38 H -0.003 1.003 39 H 0.264 0.736 40 H 0.120 0.880 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 -15.779 4.651 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.336 6.336 3 C -0.017 4.017 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.121 4.121 7 C 0.011 3.989 8 H 0.079 0.921 9 N -0.300 5.300 10 C 0.089 3.911 11 C -0.571 4.571 12 H 0.082 0.918 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.794 3.206 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.187 1.187 19 C -0.116 4.116 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.152 4.152 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.153 0.847 37 H -0.027 1.027 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.159 0.841 42 H 0.165 0.835 43 H 0.161 0.839 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.379 -15.808 4.795 16.524 hybrid contribution 0.462 1.415 -0.494 1.569 sum 0.083 -14.393 4.300 15.022 Atomic orbital electron populations 1.22922 0.79751 1.03808 1.00683 1.87812 1.21344 1.28874 1.95592 1.22606 0.94464 0.84128 1.00507 1.21432 0.92682 0.97375 1.02977 1.21301 0.94820 0.95725 1.02198 1.21396 0.94861 0.93781 1.02105 1.20681 0.88759 0.96216 0.93199 0.92075 1.60807 1.56883 1.06733 1.05562 1.19112 0.92337 0.83905 0.95787 1.21545 1.46641 0.91793 0.97099 0.91775 1.25911 0.95074 0.98128 1.00419 1.70100 1.50283 1.05833 1.31221 0.85382 0.78390 0.77572 0.79258 1.19846 1.20870 1.18721 1.20871 0.97391 0.98904 0.94439 1.21107 0.94874 1.00761 0.98247 1.21416 0.94253 0.99781 0.98784 1.21468 1.01022 0.99983 0.92578 1.21444 0.93456 0.99376 0.99956 1.21277 0.95875 1.00914 0.97159 0.88228 0.93327 0.93607 0.92841 0.93375 0.91529 0.90994 0.92688 0.92072 0.91730 0.90886 0.84744 1.02719 0.98538 0.92755 0.86170 0.84140 0.83548 0.83891 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.17 10.70 -148.98 -1.59 -11.76 16 3 C 0.06 1.41 5.94 71.98 0.43 1.83 16 4 C -0.11 -2.57 5.58 30.59 0.17 -2.40 16 5 C -0.10 -2.87 5.10 30.59 0.16 -2.71 16 6 C -0.08 -2.37 4.87 30.60 0.15 -2.22 16 7 C 0.12 4.31 2.22 44.17 0.10 4.41 16 8 H 0.06 2.35 7.66 -2.39 -0.02 2.33 16 9 N -0.67 -28.40 5.68 -499.43 -2.83 -31.24 16 10 C 0.22 11.68 5.23 85.56 0.45 12.13 16 11 C -0.53 -30.50 9.32 25.60 0.24 -30.26 16 12 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 13 C 0.00 0.16 5.46 84.66 0.46 0.62 16 14 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 15 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 C -0.11 -3.84 4.71 -19.87 -0.09 -3.94 16 20 C -0.13 -4.18 9.11 22.27 0.20 -3.97 16 21 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 22 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 23 C -0.12 -3.26 10.05 22.27 0.22 -3.04 16 24 C -0.13 -4.10 9.67 22.27 0.22 -3.89 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 2.00 7.75 -2.39 -0.02 1.98 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.33 13.67 6.35 -89.70 -0.57 13.10 16 37 H -0.04 -2.67 8.00 -2.39 -0.02 -2.69 16 38 H 0.00 -0.21 8.06 -2.39 -0.02 -0.23 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.12 3.72 6.53 -2.91 -0.02 3.70 16 41 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 43 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 44 H 0.12 3.50 8.04 -2.91 -0.02 3.48 16 Total: -1.00 -66.66 362.99 2.65 -64.01 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.38 Total: 27.16 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 4.39 Total: -37.99 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -2.55 Total: -88.03 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.59 Total: -11.76 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -66.66 2.65 -64.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411657893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.768 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds