Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39868 * 125.89778 * 2 1 4 4 C 1.35314 * 107.91825 * 179.86694 * 3 2 1 5 5 N 1.34946 * 107.74657 * 0.39997 * 4 3 2 6 6 C 1.46506 * 126.03988 * 179.75214 * 5 4 3 7 7 C 1.53121 * 109.52250 * 34.65133 * 6 5 4 8 8 C 1.53036 * 109.28031 * 182.44191 * 7 6 5 9 9 N 1.46849 * 109.52115 * 59.18055 * 8 7 6 10 10 C 1.46901 * 111.00024 * 174.16070 * 9 8 7 11 11 H 1.08999 * 109.46659 * 179.21031 * 10 9 8 12 12 C 1.52998 * 109.46950 * 59.21207 * 10 9 8 13 13 C 1.52998 * 109.47209 * 299.21451 * 10 9 8 14 14 C 1.50704 * 109.46646 * 294.99880 * 13 10 9 15 15 H 1.07994 * 120.00655 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99889 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99789 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00308 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46818 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47072 * 120.00115 * 18 16 14 21 21 H 1.48499 * 109.46902 * 240.00277 * 18 16 14 22 22 C 1.46851 * 111.19784 * 298.26154 * 9 8 7 23 23 C 1.53038 * 109.52534 * 61.74067 * 22 9 8 24 24 N 1.30840 * 125.89813 * 180.32021 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.70785 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.70383 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.71013 * 1 2 3 28 28 H 1.07997 * 126.04325 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.12526 * 180.14899 * 4 3 2 30 30 H 1.08998 * 109.52187 * 154.84504 * 6 5 4 31 31 H 1.09003 * 109.50515 * 302.38694 * 7 6 5 32 32 H 1.09010 * 109.49782 * 62.50538 * 7 6 5 33 33 H 1.09002 * 109.46344 * 299.17163 * 8 7 6 34 34 H 1.08992 * 109.45412 * 179.19375 * 8 7 6 35 35 H 1.09001 * 109.47302 * 299.99970 * 12 10 9 36 36 H 1.08996 * 109.47321 * 59.99709 * 12 10 9 37 37 H 1.09001 * 109.47466 * 180.02562 * 12 10 9 38 38 H 1.08996 * 109.46890 * 54.99446 * 13 10 9 39 39 H 1.08997 * 109.47178 * 175.00281 * 13 10 9 40 40 H 0.97001 * 120.00118 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46073 * 301.71805 * 22 9 8 42 42 H 1.08999 * 109.45885 * 181.75643 * 22 9 8 43 43 H 1.09001 * 109.49808 * 180.87698 * 23 22 9 44 44 H 1.08998 * 109.53023 * 60.78195 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 0.0030 5 7 3.6088 -0.6341 -0.0042 6 6 4.7899 -1.5008 -0.0091 7 6 5.9051 -0.8508 0.8146 8 6 7.1556 -1.7309 0.7555 9 7 7.5811 -1.8858 -0.6414 10 6 8.8568 -2.6093 -0.7260 11 1 9.1416 -2.7223 -1.7721 12 6 8.7027 -3.9910 -0.0873 13 6 9.9395 -1.8227 0.0154 14 6 10.1777 -0.5111 -0.6876 15 1 9.6130 -0.2632 -1.5742 16 6 11.1158 0.3729 -0.1983 17 7 11.8031 0.0713 0.8817 18 14 11.4116 1.9984 -1.0700 19 1 10.5176 2.0962 -2.2517 20 1 11.1248 3.1189 -0.1388 21 1 12.8273 2.0723 -1.5123 22 6 6.5447 -2.5507 -1.4416 23 6 5.2760 -1.6950 -1.4480 24 7 2.2742 -1.0599 -0.0059 25 1 -0.3633 -0.0052 1.0277 26 1 -0.3634 0.8926 -0.5092 27 1 -0.3633 -0.8874 -0.5183 28 1 1.9924 2.1598 -0.0004 29 1 4.4891 1.3486 0.0060 30 1 4.5336 -2.4683 0.4225 31 1 6.1331 0.1335 0.4056 32 1 5.5803 -0.7489 1.8502 33 1 6.9306 -2.7105 1.1773 34 1 7.9558 -1.2636 1.3293 35 1 8.4177 -3.8781 0.9587 36 1 7.9313 -4.5515 -0.6154 37 1 9.6493 -4.5278 -0.1497 38 1 9.6145 -1.6328 1.0383 39 1 10.8635 -2.4006 0.0290 40 1 12.4634 0.6931 1.2257 41 1 6.3226 -3.5265 -1.0095 42 1 6.9015 -2.6789 -2.4635 43 1 4.5020 -2.1964 -2.0291 44 1 5.4936 -0.7240 -1.8929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411684803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = 69.717024 kcal Electronic energy + Delta-G solvation = -22090.045803 eV Core-core repulsion = 19043.576464 eV Total energy + Delta-G solvation = -3046.469339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22959 -39.02164 -35.53984 -33.02350 -32.01593 -30.79467 -30.14926 -29.49862 -27.45926 -27.16997 -23.90229 -23.24133 -22.81992 -21.27344 -19.77187 -19.68544 -18.58129 -17.15959 -16.20909 -15.57572 -15.04985 -14.70227 -14.39901 -14.32768 -14.07694 -13.69393 -13.62927 -13.25691 -13.01762 -12.82015 -12.55414 -12.22809 -12.07761 -11.98166 -11.81690 -11.61232 -11.26248 -11.08257 -10.97214 -10.66025 -10.59942 -10.57690 -10.39984 -10.25442 -9.94539 -9.21470 -9.13598 -9.01535 -8.46011 -8.30923 -7.58897 -5.94023 -3.92204 1.98713 2.54462 2.83302 3.34316 3.42469 3.47438 4.38551 4.47089 4.52376 4.79399 4.85590 4.88474 5.07732 5.20884 5.32407 5.42802 5.47042 5.49732 5.52943 5.61319 5.68917 5.70492 5.75333 5.82061 5.86444 5.90799 5.92186 5.96081 6.09968 6.15089 6.18733 6.30443 6.40590 6.52901 6.66314 6.75320 6.90060 7.14214 7.45580 7.60307 7.82254 7.83004 7.93305 8.07138 8.51914 9.14485 9.70153 11.17805 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.004436 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.964255 B = 6310.722451 C = 7237.159115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.062 3.938 3 C -0.282 4.282 4 C 0.065 3.935 5 N -0.359 5.359 6 C 0.162 3.838 7 C -0.123 4.123 8 C 0.060 3.940 9 N -0.511 5.511 10 C 0.087 3.913 11 H 0.072 0.928 12 C -0.185 4.185 13 C 0.028 3.972 14 C -0.491 4.491 15 H 0.061 0.939 16 C 0.051 3.949 17 N -0.903 5.903 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.287 1.287 22 C 0.056 3.944 23 C -0.122 4.122 24 N -0.303 5.303 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.173 0.827 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.257 0.743 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.160 -2.274 -1.236 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C -0.311 4.311 4 C -0.082 4.082 5 N -0.140 5.140 6 C 0.061 3.939 7 C -0.162 4.162 8 C -0.069 4.069 9 N -0.235 5.235 10 C -0.020 4.020 11 H 0.090 0.910 12 C -0.244 4.244 13 C -0.009 4.009 14 C -0.530 4.530 15 H 0.080 0.920 16 C -0.148 4.148 17 N -0.544 5.544 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.214 1.214 22 C -0.073 4.073 23 C -0.161 4.161 24 N -0.126 5.126 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.190 0.810 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.800 -3.098 -1.337 17.135 hybrid contribution 0.222 1.083 -0.050 1.106 sum -16.577 -2.015 -1.387 16.757 Atomic orbital electron populations 1.20121 0.87102 1.02928 1.02610 1.22298 0.96742 0.91019 1.00360 1.21332 0.91711 0.99566 1.18538 1.22573 0.99607 0.85470 1.00555 1.48899 1.04921 1.04689 1.55500 1.21487 0.81066 0.93443 0.97951 1.22008 0.93673 1.01247 0.99257 1.22057 0.96362 0.97321 0.91143 1.62073 1.02239 1.49909 1.09298 1.21914 0.89843 0.89872 1.00392 0.91014 1.22534 1.01194 0.99683 1.01021 1.19251 0.91589 0.94749 0.95354 1.21208 1.19002 1.01488 1.11295 0.92034 1.25008 0.96338 0.98302 0.95201 1.69971 1.25370 1.36390 1.22655 0.86591 0.77760 0.84222 0.79745 1.19774 1.21320 1.21376 1.22032 0.91398 0.94622 0.99237 1.21997 0.97166 1.02207 0.94699 1.77252 0.86832 1.23045 1.25454 0.90868 0.90701 0.91248 0.83915 0.80969 0.88768 0.89816 0.91157 0.95424 0.87990 0.92942 0.94029 0.92420 0.96172 0.96251 0.93333 0.95209 0.90486 0.91439 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.45 36.01 0.38 -0.24 16 2 C 0.06 0.80 7.22 -82.40 -0.59 0.21 16 3 C -0.28 -3.50 10.74 -40.01 -0.43 -3.93 16 4 C 0.06 0.85 10.59 -17.22 -0.18 0.67 16 5 N -0.36 -5.15 3.53 -54.74 -0.19 -5.34 16 6 C 0.16 2.21 3.27 -67.80 -0.22 1.99 16 7 C -0.12 -1.74 5.06 -26.65 -0.13 -1.87 16 8 C 0.06 0.97 4.64 -3.83 -0.02 0.96 16 9 N -0.51 -8.92 4.36 -226.69 -0.99 -9.91 16 10 C 0.09 1.67 2.30 -67.71 -0.16 1.52 16 11 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 12 C -0.19 -3.01 8.50 37.16 0.32 -2.69 16 13 C 0.03 0.66 4.27 -27.88 -0.12 0.54 16 14 C -0.49 -13.22 8.84 -34.44 -0.30 -13.52 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 16 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 17 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.06 0.81 5.03 -3.83 -0.02 0.79 16 23 C -0.12 -1.66 5.70 -26.65 -0.15 -1.81 16 24 N -0.30 -4.60 12.58 33.67 0.42 -4.18 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.17 1.94 7.20 -52.49 -0.38 1.57 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.08 1.24 7.04 -51.93 -0.37 0.87 16 32 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.03 0.42 6.62 -51.93 -0.34 0.08 16 34 H 0.10 1.95 5.93 -51.93 -0.31 1.64 16 35 H 0.05 0.84 6.52 -51.93 -0.34 0.51 16 36 H 0.04 0.60 6.65 -51.93 -0.35 0.25 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.51 6.05 -51.93 -0.31 0.20 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.03 0.41 6.73 -51.93 -0.35 0.06 16 42 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -30.28 342.94 -8.96 -39.24 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.35 Total: 0.37 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.74 Total: -16.08 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.02 Total: -45.18 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.28 -8.96 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411684803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.961 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds