Wall clock time and date at job start Mon Mar 30 2020 02:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39868 * 125.89778 * 2 1 4 4 C 1.35314 * 107.91825 * 179.86694 * 3 2 1 5 5 N 1.34946 * 107.74657 * 0.39997 * 4 3 2 6 6 C 1.46506 * 126.03988 * 179.75214 * 5 4 3 7 7 C 1.53121 * 109.52250 * 34.65133 * 6 5 4 8 8 C 1.53036 * 109.28031 * 182.44191 * 7 6 5 9 9 N 1.46849 * 109.52115 * 59.18055 * 8 7 6 10 10 C 1.46901 * 111.00024 * 174.16070 * 9 8 7 11 11 H 1.08999 * 109.46659 * 179.21031 * 10 9 8 12 12 C 1.52998 * 109.46950 * 59.21207 * 10 9 8 13 13 C 1.52998 * 109.47209 * 299.21451 * 10 9 8 14 14 C 1.50704 * 109.46646 * 294.99880 * 13 10 9 15 15 H 1.07994 * 120.00655 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99889 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99789 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00308 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46818 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47072 * 120.00115 * 18 16 14 21 21 H 1.48499 * 109.46902 * 240.00277 * 18 16 14 22 22 C 1.46851 * 111.19784 * 298.26154 * 9 8 7 23 23 C 1.53038 * 109.52534 * 61.74067 * 22 9 8 24 24 N 1.30840 * 125.89813 * 180.32021 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.70785 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.70383 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.71013 * 1 2 3 28 28 H 1.07997 * 126.04325 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.12526 * 180.14899 * 4 3 2 30 30 H 1.08998 * 109.52187 * 154.84504 * 6 5 4 31 31 H 1.09003 * 109.50515 * 302.38694 * 7 6 5 32 32 H 1.09010 * 109.49782 * 62.50538 * 7 6 5 33 33 H 1.09002 * 109.46344 * 299.17163 * 8 7 6 34 34 H 1.08992 * 109.45412 * 179.19375 * 8 7 6 35 35 H 1.09001 * 109.47302 * 299.99970 * 12 10 9 36 36 H 1.08996 * 109.47321 * 59.99709 * 12 10 9 37 37 H 1.09001 * 109.47466 * 180.02562 * 12 10 9 38 38 H 1.08996 * 109.46890 * 54.99446 * 13 10 9 39 39 H 1.08997 * 109.47178 * 175.00281 * 13 10 9 40 40 H 0.97001 * 120.00118 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46073 * 301.71805 * 22 9 8 42 42 H 1.08999 * 109.45885 * 181.75643 * 22 9 8 43 43 H 1.09001 * 109.49808 * 180.87698 * 23 22 9 44 44 H 1.08998 * 109.53023 * 60.78195 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 0.0030 5 7 3.6088 -0.6341 -0.0042 6 6 4.7899 -1.5008 -0.0091 7 6 5.9051 -0.8508 0.8146 8 6 7.1556 -1.7309 0.7555 9 7 7.5811 -1.8858 -0.6414 10 6 8.8568 -2.6093 -0.7260 11 1 9.1416 -2.7223 -1.7721 12 6 8.7027 -3.9910 -0.0873 13 6 9.9395 -1.8227 0.0154 14 6 10.1777 -0.5111 -0.6876 15 1 9.6130 -0.2632 -1.5742 16 6 11.1158 0.3729 -0.1983 17 7 11.8031 0.0713 0.8817 18 14 11.4116 1.9984 -1.0700 19 1 10.5176 2.0962 -2.2517 20 1 11.1248 3.1189 -0.1388 21 1 12.8273 2.0723 -1.5123 22 6 6.5447 -2.5507 -1.4416 23 6 5.2760 -1.6950 -1.4480 24 7 2.2742 -1.0599 -0.0059 25 1 -0.3633 -0.0052 1.0277 26 1 -0.3634 0.8926 -0.5092 27 1 -0.3633 -0.8874 -0.5183 28 1 1.9924 2.1598 -0.0004 29 1 4.4891 1.3486 0.0060 30 1 4.5336 -2.4683 0.4225 31 1 6.1331 0.1335 0.4056 32 1 5.5803 -0.7489 1.8502 33 1 6.9306 -2.7105 1.1773 34 1 7.9558 -1.2636 1.3293 35 1 8.4177 -3.8781 0.9587 36 1 7.9313 -4.5515 -0.6154 37 1 9.6493 -4.5278 -0.1497 38 1 9.6145 -1.6328 1.0383 39 1 10.8635 -2.4006 0.0290 40 1 12.4634 0.6931 1.2257 41 1 6.3226 -3.5265 -1.0095 42 1 6.9015 -2.6789 -2.4635 43 1 4.5020 -2.1964 -2.0291 44 1 5.4936 -0.7240 -1.8929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411684803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:54 Heat of formation + Delta-G solvation = 52.056821 kcal Electronic energy + Delta-G solvation = -22090.811607 eV Core-core repulsion = 19043.576464 eV Total energy + Delta-G solvation = -3047.235143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.23441 -40.31718 -36.86767 -34.80012 -33.36213 -31.99576 -31.29762 -30.62476 -29.19107 -28.23245 -25.39700 -24.65080 -24.19653 -22.44428 -21.05427 -20.68052 -19.89027 -18.32549 -18.22707 -16.90245 -16.54150 -16.08082 -15.79896 -15.45337 -15.25330 -14.88192 -14.74943 -14.53913 -14.17476 -13.89063 -13.76530 -13.59755 -13.44939 -13.21447 -12.95531 -12.93354 -12.85767 -12.57935 -12.42645 -12.34387 -12.13191 -11.85776 -11.68585 -11.55464 -11.44704 -11.05576 -10.93539 -10.46033 -10.15360 -9.44666 -8.94216 -8.08694 -6.12950 0.98066 1.41722 1.43860 1.53622 1.55865 1.89318 2.48433 3.04949 3.27948 3.41462 3.68865 3.90214 3.94430 3.96626 4.10647 4.25393 4.29349 4.30956 4.42476 4.48778 4.58855 4.60993 4.68316 4.73016 4.81141 4.85779 4.88531 4.92472 4.97695 5.04304 5.09362 5.13679 5.16438 5.22198 5.27936 5.33017 5.52909 5.72649 5.84510 5.92235 6.14461 6.31898 6.42006 6.51946 6.83934 7.01667 7.53199 9.03315 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.004436 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.964255 B = 6310.722451 C = 7237.159115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.056 3.944 3 C -0.285 4.285 4 C 0.053 3.947 5 N -0.371 5.371 6 C 0.169 3.831 7 C -0.112 4.112 8 C 0.065 3.935 9 N -0.529 5.529 10 C 0.096 3.904 11 H 0.067 0.933 12 C -0.176 4.176 13 C 0.033 3.967 14 C -0.496 4.496 15 H 0.058 0.942 16 C -0.003 4.003 17 N -0.940 5.940 18 Si 0.952 3.048 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.060 3.940 23 C -0.111 4.111 24 N -0.337 5.337 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.166 0.834 29 H 0.185 0.815 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.002 0.998 39 H -0.009 1.009 40 H 0.258 0.742 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.180 -1.914 -2.079 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 C -0.314 4.314 4 C -0.093 4.093 5 N -0.151 5.151 6 C 0.068 3.932 7 C -0.151 4.151 8 C -0.063 4.063 9 N -0.253 5.253 10 C -0.012 4.012 11 H 0.085 0.915 12 C -0.235 4.235 13 C -0.004 4.004 14 C -0.534 4.534 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.582 5.582 18 Si 0.779 3.221 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.068 4.068 23 C -0.150 4.150 24 N -0.160 5.160 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.184 0.816 29 H 0.202 0.798 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.020 0.980 39 H 0.009 0.991 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.837 -2.740 -2.190 19.160 hybrid contribution 0.808 0.984 0.224 1.293 sum -18.029 -1.756 -1.966 18.221 Atomic orbital electron populations 1.20266 0.84553 1.04067 1.03730 1.22978 0.98443 0.90673 0.98873 1.21698 0.91374 1.00638 1.17733 1.22937 1.00594 0.85318 1.00491 1.48901 1.04808 1.05056 1.56374 1.21333 0.80826 0.93401 0.97656 1.21859 0.92978 1.00293 0.99939 1.21916 0.96051 0.98060 0.90290 1.61957 1.02460 1.50696 1.10225 1.21599 0.89425 0.90799 0.99377 0.91512 1.22404 1.02102 0.97968 1.00978 1.19109 0.92167 0.94184 0.94929 1.21516 1.18413 1.02518 1.10995 0.92335 1.25805 0.96372 1.01806 0.95930 1.70094 1.26204 1.37687 1.24215 0.85580 0.77639 0.80094 0.78794 1.18937 1.20985 1.21117 1.22049 0.90690 0.95138 0.98928 1.21883 0.96837 1.01494 0.94784 1.77216 0.87302 1.24393 1.27123 0.89639 0.88586 0.91110 0.81638 0.79832 0.88567 0.90687 0.90336 0.94104 0.91492 0.93037 0.91395 0.92500 0.97963 0.99080 0.93355 0.93732 0.90046 0.90521 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.45 71.24 0.74 -0.30 16 2 C 0.06 1.35 7.22 43.10 0.31 1.66 16 3 C -0.29 -6.49 10.74 21.99 0.24 -6.26 16 4 C 0.05 1.31 10.59 83.54 0.88 2.20 16 5 N -0.37 -10.13 3.53 -327.11 -1.16 -11.28 16 6 C 0.17 4.39 3.27 45.07 0.15 4.54 16 7 C -0.11 -3.09 5.06 30.65 0.16 -2.93 16 8 C 0.07 2.12 4.64 86.33 0.40 2.52 16 9 N -0.53 -18.14 4.36 -871.12 -3.80 -21.94 16 10 C 0.10 3.66 2.30 44.91 0.10 3.77 16 11 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 12 C -0.18 -5.50 8.50 71.98 0.61 -4.88 16 13 C 0.03 1.65 4.27 29.85 0.13 1.78 16 14 C -0.50 -27.14 8.84 25.60 0.23 -26.91 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 17 N -0.94 -56.40 13.29 21.45 0.28 -56.11 16 18 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 C 0.06 1.63 5.03 86.33 0.43 2.07 16 23 C -0.11 -2.84 5.70 30.65 0.17 -2.67 16 24 N -0.34 -9.77 12.58 -47.38 -0.60 -10.36 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.18 3.93 7.20 -2.91 -0.02 3.91 16 30 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 2.20 7.04 -2.39 -0.02 2.18 16 32 H 0.08 2.02 8.14 -2.38 -0.02 2.01 16 33 H 0.04 1.21 6.62 -2.39 -0.02 1.19 16 34 H 0.07 2.65 5.93 -2.39 -0.01 2.64 16 35 H 0.05 1.61 6.52 -2.39 -0.02 1.59 16 36 H 0.07 1.77 6.65 -2.39 -0.02 1.76 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.00 0.12 6.05 -2.39 -0.01 0.10 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 40 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.04 1.10 6.73 -2.39 -0.02 1.08 16 42 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -65.37 342.94 2.74 -62.63 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.96 Total: 15.71 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 5.02 Total: -25.14 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -5.26 Total: -99.70 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.37 2.74 -62.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411684803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.684 kcal (2) G-P(sol) polarization free energy of solvation -65.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds