Wall clock time and date at job start Mon Mar 30 2020 01:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47246 * 2 1 4 4 C 1.53014 * 109.46970 * 119.99823 * 2 1 3 5 5 N 1.46897 * 109.46540 * 302.39422 * 4 2 1 6 6 C 1.46907 * 110.99494 * 158.74245 * 5 4 2 7 7 C 1.50699 * 109.46804 * 190.00043 * 6 5 4 8 8 H 1.08007 * 120.00430 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99705 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99996 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99728 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47218 * 89.99828 * 11 9 7 13 13 H 1.48504 * 109.46972 * 209.99685 * 11 9 7 14 14 H 1.48499 * 109.47261 * 329.99506 * 11 9 7 15 15 C 1.46901 * 111.00056 * 282.69338 * 5 4 2 16 16 H 1.09003 * 109.47117 * 209.17830 * 15 5 4 17 17 C 1.53003 * 109.46950 * 329.17321 * 15 5 4 18 18 C 1.52995 * 109.47463 * 89.17421 * 15 5 4 19 19 O 1.42900 * 109.46949 * 62.44653 * 18 15 5 20 20 C 1.50697 * 109.47016 * 239.99376 * 2 1 3 21 21 C 1.38242 * 120.00260 * 299.72810 * 20 2 1 22 22 C 1.38234 * 119.99877 * 179.80825 * 21 20 2 23 23 C 1.38236 * 119.99994 * 0.40328 * 22 21 20 24 24 C 1.38229 * 120.00071 * 359.85089 * 23 22 21 25 25 C 1.38233 * 119.99908 * 120.00742 * 20 2 1 26 26 H 1.09005 * 109.46789 * 300.00638 * 1 2 3 27 27 H 1.08999 * 109.46977 * 60.00447 * 1 2 3 28 28 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46724 * 182.39584 * 4 2 1 30 30 H 1.08999 * 109.46966 * 62.39436 * 4 2 1 31 31 H 1.08996 * 109.46608 * 309.99394 * 6 5 4 32 32 H 1.08999 * 109.47169 * 69.99943 * 6 5 4 33 33 H 0.97006 * 119.99482 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47216 * 67.13737 * 17 15 5 35 35 H 1.08997 * 109.46803 * 187.14137 * 17 15 5 36 36 H 1.09001 * 109.47151 * 307.13566 * 17 15 5 37 37 H 1.08990 * 109.47403 * 182.44422 * 18 15 5 38 38 H 1.08997 * 109.47063 * 302.45325 * 18 15 5 39 39 H 0.96696 * 114.00469 * 180.02562 * 19 18 15 40 40 H 1.08001 * 119.99464 * 359.97438 * 21 20 2 41 41 H 1.07998 * 119.99641 * 180.23091 * 22 21 20 42 42 H 1.08000 * 119.99624 * 179.83476 * 23 22 21 43 43 H 1.08006 * 119.99991 * 179.97438 * 24 23 22 44 44 H 1.07996 * 120.00090 * 359.97186 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2494 5 7 1.5036 -0.0629 2.4480 6 6 1.5323 -0.9692 3.6038 7 6 0.7581 -0.3562 4.7421 8 1 0.2917 0.6103 4.6195 9 6 0.6461 -1.0286 5.9406 10 7 1.2144 -2.2051 6.0902 11 14 -0.3130 -0.2684 7.3520 12 1 -1.7347 -0.6891 7.2677 13 1 0.2622 -0.7235 8.6432 14 1 -0.2289 1.2118 7.2670 15 6 2.2310 1.1805 2.7357 16 1 2.2129 1.3721 3.8087 17 6 3.6809 1.0434 2.2666 18 6 1.5644 2.3437 1.9987 19 8 0.2282 2.5080 2.4778 20 6 2.0323 -0.7105 -1.2304 21 6 1.7030 -2.0357 -1.4462 22 6 2.1605 -2.6862 -2.5768 23 6 2.9542 -2.0141 -3.4874 24 6 3.2878 -0.6906 -3.2690 25 6 2.8271 -0.0389 -2.1403 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1291 -0.6842 1.2711 30 1 1.7121 -1.7606 1.2282 31 1 1.0809 -1.9225 3.3292 32 1 2.5650 -1.1316 3.9125 33 1 1.1352 -2.6783 6.9333 34 1 3.7062 0.9786 1.1789 35 1 4.2519 1.9128 2.5923 36 1 4.1174 0.1409 2.6946 37 1 2.1294 3.2585 2.1772 38 1 1.5435 2.1322 0.9296 39 1 -0.2560 3.2294 2.0533 40 1 1.0860 -2.5618 -0.7328 41 1 1.9001 -3.7204 -2.7473 42 1 3.3138 -2.5232 -4.3694 43 1 3.9083 -0.1656 -3.9803 44 1 3.0878 0.9952 -1.9697 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411736701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:59 Heat of formation + Delta-G solvation = -18.163659 kcal Electronic energy + Delta-G solvation = -22472.155433 eV Core-core repulsion = 19389.582551 eV Total energy + Delta-G solvation = -3082.572882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.61822 -38.13655 -35.58368 -34.03133 -32.52791 -30.86046 -30.30811 -29.19318 -27.06121 -25.80628 -24.67372 -22.88612 -22.34940 -21.91184 -19.89153 -18.77418 -16.92132 -16.69052 -16.04937 -15.75923 -15.15037 -14.85826 -14.59846 -14.23379 -13.63267 -13.48930 -13.34405 -13.26856 -12.97819 -12.59748 -12.15800 -11.83411 -11.79336 -11.68704 -11.58965 -11.42610 -11.12878 -10.88844 -10.81403 -10.72767 -10.46001 -10.35548 -10.21149 -9.92432 -9.61479 -9.17245 -9.04878 -8.84781 -8.54451 -8.34070 -7.06538 -5.92751 -3.91778 1.45815 1.47416 3.39296 3.44726 3.50329 3.87559 4.50808 4.74169 4.82159 4.91292 5.02192 5.10667 5.22030 5.32430 5.42738 5.55194 5.60622 5.64850 5.68511 5.72916 5.81775 5.90401 5.92641 6.02256 6.07949 6.19939 6.21579 6.24779 6.32656 6.44000 6.52124 6.56110 6.57000 6.59252 6.82544 6.88959 6.98889 7.10778 7.38184 7.43568 7.96638 8.16707 8.26985 8.32705 8.68316 9.20304 9.71966 11.18259 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.004724 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.947616 B = 5925.745866 C = 6451.514846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 H 0.078 0.922 4 C 0.050 3.950 5 N -0.514 5.514 6 C 0.195 3.805 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.052 3.948 10 N -0.904 5.904 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.274 1.274 15 C 0.081 3.919 16 H 0.096 0.904 17 C -0.174 4.174 18 C 0.084 3.916 19 O -0.544 6.544 20 C -0.064 4.064 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.123 4.123 26 H 0.088 0.912 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.027 0.973 32 H -0.012 1.012 33 H 0.259 0.741 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.046 0.954 39 H 0.359 0.641 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.589 5.358 -16.981 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.072 4.072 3 H 0.096 0.904 4 C -0.078 4.078 5 N -0.237 5.237 6 C 0.070 3.930 7 C -0.536 4.536 8 H 0.089 0.911 9 C -0.148 4.148 10 N -0.544 5.544 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.199 1.199 15 C -0.029 4.029 16 H 0.114 0.886 17 C -0.233 4.233 18 C 0.005 3.995 19 O -0.346 6.346 20 C -0.064 4.064 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.141 4.141 26 H 0.107 0.893 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.006 0.994 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.203 0.797 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.294 4.807 -16.530 17.527 hybrid contribution 0.329 0.441 0.543 0.773 sum 3.624 5.249 -15.987 17.212 Atomic orbital electron populations 1.21723 0.93475 1.01886 1.01907 1.20445 0.97147 0.98627 0.90970 0.90432 1.22307 0.97322 0.97679 0.90521 1.62146 1.51918 1.05154 1.04480 1.19740 0.95284 0.91420 0.86538 1.21290 1.31628 1.05006 0.95719 0.91062 1.24985 0.96085 0.95000 0.98718 1.69974 1.45050 1.13802 1.25572 0.86527 0.80083 0.79547 0.81409 1.20785 1.21617 1.19855 1.21626 0.89051 0.90731 1.01450 0.88550 1.22333 0.98095 1.01813 1.01019 1.22502 0.83525 0.96333 0.97111 1.86776 1.25750 1.56067 1.66032 1.20129 0.96019 0.94202 0.96093 1.21119 1.00015 0.94523 0.97400 1.21143 0.98169 0.99749 0.94699 1.21061 0.99568 0.94979 0.99576 1.21076 1.00302 0.95005 0.97635 1.21063 0.98538 0.99782 0.94687 0.89331 0.94606 0.93309 0.94381 0.91771 0.95446 0.99447 0.93181 0.92631 0.93032 0.92010 0.95401 0.93666 0.79735 0.85858 0.86381 0.86625 0.86556 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.73 37.16 0.32 -1.71 16 2 C -0.05 -0.79 1.86 -91.77 -0.17 -0.96 16 3 H 0.08 1.10 4.21 -51.93 -0.22 0.88 16 4 C 0.05 0.89 3.81 -3.82 -0.01 0.88 16 5 N -0.51 -10.70 3.35 -228.07 -0.76 -11.46 16 6 C 0.20 5.07 4.65 -4.97 -0.02 5.05 16 7 C -0.50 -14.14 8.13 -34.44 -0.28 -14.42 16 8 H 0.07 2.07 7.52 -52.48 -0.39 1.67 16 9 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 11 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 15 C 0.08 1.53 2.26 -67.71 -0.15 1.37 16 16 H 0.10 2.16 6.66 -51.93 -0.35 1.82 16 17 C -0.17 -2.78 7.78 37.16 0.29 -2.49 16 18 C 0.08 1.32 6.32 37.15 0.23 1.55 16 19 O -0.54 -9.38 13.13 -35.23 -0.46 -9.84 16 20 C -0.06 -0.87 4.78 -104.62 -0.50 -1.37 16 21 C -0.11 -1.52 8.69 -39.58 -0.34 -1.86 16 22 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 23 C -0.13 -1.47 10.05 -39.59 -0.40 -1.86 16 24 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.50 9.67 -39.58 -0.38 -1.88 16 26 H 0.09 1.56 7.01 -51.93 -0.36 1.20 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.76 7.41 -51.93 -0.38 0.38 16 29 H 0.04 0.67 5.09 -51.93 -0.26 0.40 16 30 H 0.06 1.21 6.85 -51.93 -0.36 0.85 16 31 H 0.03 0.77 7.82 -51.93 -0.41 0.36 16 32 H -0.01 -0.34 7.93 -51.93 -0.41 -0.75 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.05 0.80 5.96 -51.93 -0.31 0.49 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.08 7.46 -51.93 -0.39 0.70 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.65 4.58 -51.93 -0.24 0.41 16 39 H 0.36 4.25 9.12 45.56 0.42 4.66 16 40 H 0.12 1.67 7.09 -52.49 -0.37 1.30 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.12 1.25 7.95 -52.49 -0.42 0.83 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -31.56 342.46 -8.79 -40.34 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.13 Total: 4.90 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.31 Total: -19.85 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.03 Total: -37.96 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.46 Total: -9.84 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.56 -8.79 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411736701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.178 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds