Wall clock time and date at job start Mon Mar 30 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47246 * 2 1 4 4 C 1.53014 * 109.46970 * 119.99823 * 2 1 3 5 5 N 1.46897 * 109.46540 * 302.39422 * 4 2 1 6 6 C 1.46907 * 110.99494 * 158.74245 * 5 4 2 7 7 C 1.50699 * 109.46804 * 190.00043 * 6 5 4 8 8 H 1.08007 * 120.00430 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99705 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99996 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99728 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47218 * 89.99828 * 11 9 7 13 13 H 1.48504 * 109.46972 * 209.99685 * 11 9 7 14 14 H 1.48499 * 109.47261 * 329.99506 * 11 9 7 15 15 C 1.46901 * 111.00056 * 282.69338 * 5 4 2 16 16 H 1.09003 * 109.47117 * 209.17830 * 15 5 4 17 17 C 1.53003 * 109.46950 * 329.17321 * 15 5 4 18 18 C 1.52995 * 109.47463 * 89.17421 * 15 5 4 19 19 O 1.42900 * 109.46949 * 62.44653 * 18 15 5 20 20 C 1.50697 * 109.47016 * 239.99376 * 2 1 3 21 21 C 1.38242 * 120.00260 * 299.72810 * 20 2 1 22 22 C 1.38234 * 119.99877 * 179.80825 * 21 20 2 23 23 C 1.38236 * 119.99994 * 0.40328 * 22 21 20 24 24 C 1.38229 * 120.00071 * 359.85089 * 23 22 21 25 25 C 1.38233 * 119.99908 * 120.00742 * 20 2 1 26 26 H 1.09005 * 109.46789 * 300.00638 * 1 2 3 27 27 H 1.08999 * 109.46977 * 60.00447 * 1 2 3 28 28 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46724 * 182.39584 * 4 2 1 30 30 H 1.08999 * 109.46966 * 62.39436 * 4 2 1 31 31 H 1.08996 * 109.46608 * 309.99394 * 6 5 4 32 32 H 1.08999 * 109.47169 * 69.99943 * 6 5 4 33 33 H 0.97006 * 119.99482 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47216 * 67.13737 * 17 15 5 35 35 H 1.08997 * 109.46803 * 187.14137 * 17 15 5 36 36 H 1.09001 * 109.47151 * 307.13566 * 17 15 5 37 37 H 1.08990 * 109.47403 * 182.44422 * 18 15 5 38 38 H 1.08997 * 109.47063 * 302.45325 * 18 15 5 39 39 H 0.96696 * 114.00469 * 180.02562 * 19 18 15 40 40 H 1.08001 * 119.99464 * 359.97438 * 21 20 2 41 41 H 1.07998 * 119.99641 * 180.23091 * 22 21 20 42 42 H 1.08000 * 119.99624 * 179.83476 * 23 22 21 43 43 H 1.08006 * 119.99991 * 179.97438 * 24 23 22 44 44 H 1.07996 * 120.00090 * 359.97186 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2494 5 7 1.5036 -0.0629 2.4480 6 6 1.5323 -0.9692 3.6038 7 6 0.7581 -0.3562 4.7421 8 1 0.2917 0.6103 4.6195 9 6 0.6461 -1.0286 5.9406 10 7 1.2144 -2.2051 6.0902 11 14 -0.3130 -0.2684 7.3520 12 1 -1.7347 -0.6891 7.2677 13 1 0.2622 -0.7235 8.6432 14 1 -0.2289 1.2118 7.2670 15 6 2.2310 1.1805 2.7357 16 1 2.2129 1.3721 3.8087 17 6 3.6809 1.0434 2.2666 18 6 1.5644 2.3437 1.9987 19 8 0.2282 2.5080 2.4778 20 6 2.0323 -0.7105 -1.2304 21 6 1.7030 -2.0357 -1.4462 22 6 2.1605 -2.6862 -2.5768 23 6 2.9542 -2.0141 -3.4874 24 6 3.2878 -0.6906 -3.2690 25 6 2.8271 -0.0389 -2.1403 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1291 -0.6842 1.2711 30 1 1.7121 -1.7606 1.2282 31 1 1.0809 -1.9225 3.3292 32 1 2.5650 -1.1316 3.9125 33 1 1.1352 -2.6783 6.9333 34 1 3.7062 0.9786 1.1789 35 1 4.2519 1.9128 2.5923 36 1 4.1174 0.1409 2.6946 37 1 2.1294 3.2585 2.1772 38 1 1.5435 2.1322 0.9296 39 1 -0.2560 3.2294 2.0533 40 1 1.0860 -2.5618 -0.7328 41 1 1.9001 -3.7204 -2.7473 42 1 3.3138 -2.5232 -4.3694 43 1 3.9083 -0.1656 -3.9803 44 1 3.0878 0.9952 -1.9697 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411736701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:58 Heat of formation + Delta-G solvation = -38.763320 kcal Electronic energy + Delta-G solvation = -22473.048701 eV Core-core repulsion = 19389.582551 eV Total energy + Delta-G solvation = -3083.466151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76818 -39.43235 -36.92269 -35.47470 -34.48658 -32.00045 -31.69185 -30.34304 -28.80034 -27.28202 -26.19101 -24.11215 -23.76765 -23.27877 -21.11949 -20.21093 -18.34308 -18.12423 -17.70665 -17.14877 -16.59777 -16.25092 -15.84723 -15.67567 -15.06894 -14.74677 -14.68071 -14.43676 -14.12964 -14.03818 -13.64179 -13.52937 -13.19426 -13.10211 -12.98155 -12.75757 -12.70652 -12.58819 -12.30442 -12.12947 -11.98045 -11.77216 -11.67666 -11.47173 -11.29809 -11.06177 -10.58558 -10.37254 -9.75335 -9.53696 -8.78406 -8.16207 -6.23951 0.52641 0.56569 1.39588 1.41450 1.53146 2.42561 2.93798 3.15395 3.29201 3.58905 3.83506 3.96665 4.19898 4.20804 4.27226 4.33721 4.35126 4.42990 4.53623 4.62088 4.66095 4.70168 4.72147 4.78586 4.81928 4.86175 4.99694 5.04611 5.16303 5.16679 5.22713 5.23481 5.29933 5.37571 5.47732 5.58821 5.67725 5.71699 5.74844 5.86826 6.14280 6.20080 6.46152 6.77399 6.94719 7.24727 7.44906 8.94557 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.004724 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.947616 B = 5925.745866 C = 6451.514846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.037 4.037 3 H 0.092 0.908 4 C 0.053 3.947 5 N -0.515 5.515 6 C 0.213 3.787 7 C -0.508 4.508 8 H 0.063 0.937 9 C -0.001 4.001 10 N -0.938 5.938 11 Si 0.966 3.034 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.073 3.927 16 H 0.054 0.946 17 C -0.165 4.165 18 C 0.091 3.909 19 O -0.576 6.576 20 C -0.081 4.081 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.126 4.126 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.042 0.958 31 H -0.006 1.006 32 H -0.042 1.042 33 H 0.262 0.738 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.382 0.618 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 7.334 -19.105 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.056 4.056 3 H 0.110 0.890 4 C -0.075 4.075 5 N -0.239 5.239 6 C 0.086 3.914 7 C -0.546 4.546 8 H 0.081 0.919 9 C -0.198 4.198 10 N -0.580 5.580 11 Si 0.791 3.209 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.036 4.036 16 H 0.072 0.928 17 C -0.223 4.223 18 C 0.013 3.987 19 O -0.382 6.382 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.140 4.140 25 C -0.144 4.144 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.012 0.988 32 H -0.025 1.025 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.230 0.770 40 H 0.125 0.875 41 H 0.150 0.850 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.823 6.810 -18.682 20.248 hybrid contribution 0.194 -0.206 1.120 1.155 sum 4.017 6.604 -17.562 19.188 Atomic orbital electron populations 1.21627 0.94065 1.00990 1.01676 1.20246 0.96548 0.98917 0.89867 0.88999 1.22340 0.97476 0.96931 0.90753 1.62104 1.53337 1.05025 1.03390 1.19328 0.92747 0.91084 0.88205 1.21494 1.31682 1.04672 0.96786 0.91877 1.25871 0.97034 0.95403 1.01490 1.70101 1.46327 1.15155 1.26412 0.85439 0.78638 0.78851 0.78003 1.20071 1.20784 1.19138 1.21722 0.91255 0.90852 0.99745 0.92794 1.22225 0.96120 1.01761 1.02204 1.22436 0.83169 0.95754 0.97362 1.86712 1.26671 1.57681 1.67103 1.20019 0.97620 0.94360 0.96199 1.21153 1.00852 0.94973 0.98155 1.21379 0.98270 1.00631 0.94333 1.21442 0.98447 0.95218 0.99925 1.21455 0.99867 0.95095 0.97563 1.21304 0.97812 1.00714 0.94586 0.91690 0.92455 0.94638 0.94017 0.93963 0.98756 1.02458 0.92951 0.90375 0.90527 0.94484 0.92545 0.91685 0.77014 0.87477 0.84954 0.83936 0.83648 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.73 71.98 0.63 -3.22 16 2 C -0.04 -1.08 1.86 -11.54 -0.02 -1.10 16 3 H 0.09 2.36 4.21 -2.39 -0.01 2.35 16 4 C 0.05 1.95 3.81 86.31 0.33 2.28 16 5 N -0.52 -22.37 3.35 -875.49 -2.93 -25.31 16 6 C 0.21 11.81 4.65 85.56 0.40 12.21 16 7 C -0.51 -30.11 8.13 25.60 0.21 -29.90 16 8 H 0.06 3.79 7.52 -2.91 -0.02 3.76 16 9 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 10 N -0.94 -58.60 13.29 21.45 0.28 -58.31 16 11 Si 0.97 46.58 29.54 68.60 2.03 48.61 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 15 C 0.07 2.79 2.26 44.91 0.10 2.90 16 16 H 0.05 2.51 6.66 -2.39 -0.02 2.49 16 17 C -0.16 -5.13 7.78 71.98 0.56 -4.57 16 18 C 0.09 2.68 6.32 71.98 0.45 3.14 16 19 O -0.58 -19.26 13.13 -148.98 -1.96 -21.22 16 20 C -0.08 -2.13 4.78 -19.87 -0.09 -2.22 16 21 C -0.13 -3.58 8.69 22.27 0.19 -3.39 16 22 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 23 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 24 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 25 C -0.13 -2.70 9.67 22.27 0.22 -2.48 16 26 H 0.06 2.30 7.01 -2.38 -0.02 2.28 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.14 7.41 -2.39 -0.02 1.13 16 29 H 0.04 1.49 5.09 -2.39 -0.01 1.48 16 30 H 0.04 1.71 6.85 -2.39 -0.02 1.69 16 31 H -0.01 -0.34 7.82 -2.39 -0.02 -0.36 16 32 H -0.04 -2.53 7.93 -2.39 -0.02 -2.55 16 33 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 34 H 0.08 2.07 5.96 -2.39 -0.01 2.05 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.32 7.46 -2.39 -0.02 1.30 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.67 4.58 -2.39 -0.01 1.65 16 39 H 0.38 8.34 9.12 -74.06 -0.68 7.66 16 40 H 0.11 3.12 7.09 -2.91 -0.02 3.10 16 41 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.14 2.33 7.95 -2.91 -0.02 2.31 16 Total: -1.00 -71.58 342.46 1.84 -69.75 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.31 Total: 19.36 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.11 Total: -32.88 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.65 Total: -83.62 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -1.96 Total: -21.22 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -71.58 1.84 -69.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411736701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.983 kcal (2) G-P(sol) polarization free energy of solvation -71.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds