Wall clock time and date at job start Mon Mar 30 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47504 * 2 1 4 4 C 1.52998 * 109.47465 * 240.00185 * 2 1 3 5 5 N 1.46900 * 109.46862 * 64.43452 * 4 2 1 6 6 C 1.46899 * 111.00081 * 75.88134 * 5 4 2 7 7 C 1.50697 * 109.46954 * 189.99769 * 6 5 4 8 8 H 1.07997 * 120.00343 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99920 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99873 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00206 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47073 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47050 * 120.00199 * 11 9 7 14 14 H 1.48499 * 109.47333 * 240.00353 * 11 9 7 15 15 C 1.46905 * 110.99948 * 199.83413 * 5 4 2 16 16 H 1.09003 * 109.47191 * 189.81172 * 15 5 4 17 17 C 1.53005 * 109.46997 * 309.81007 * 15 5 4 18 18 C 1.52994 * 109.47285 * 69.80940 * 15 5 4 19 19 O 1.42904 * 109.46897 * 62.06062 * 18 15 5 20 20 C 1.50702 * 109.47433 * 120.00282 * 2 1 3 21 21 C 1.38241 * 119.99785 * 59.72209 * 20 2 1 22 22 C 1.38232 * 119.99877 * 179.79066 * 21 20 2 23 23 C 1.38244 * 120.00066 * 0.44711 * 22 21 20 24 24 C 1.38237 * 119.99720 * 359.80634 * 23 22 21 25 25 C 1.38235 * 120.00107 * 240.00265 * 20 2 1 26 26 H 1.09002 * 109.47245 * 54.83846 * 1 2 3 27 27 H 1.08998 * 109.47030 * 294.83784 * 1 2 3 28 28 H 1.09005 * 109.47364 * 174.83974 * 1 2 3 29 29 H 1.08996 * 109.48054 * 184.43520 * 4 2 1 30 30 H 1.09006 * 109.47286 * 304.44127 * 4 2 1 31 31 H 1.09001 * 109.46940 * 309.99758 * 6 5 4 32 32 H 1.09001 * 109.47285 * 69.99779 * 6 5 4 33 33 H 0.97005 * 120.00398 * 179.97438 * 10 9 7 34 34 H 1.08993 * 109.46920 * 60.00059 * 17 15 5 35 35 H 1.08994 * 109.47094 * 180.02562 * 17 15 5 36 36 H 1.08995 * 109.47166 * 300.00087 * 17 15 5 37 37 H 1.09004 * 109.47281 * 182.05706 * 18 15 5 38 38 H 1.08994 * 109.47384 * 302.06043 * 18 15 5 39 39 H 0.96701 * 113.99696 * 180.02562 * 19 18 15 40 40 H 1.07991 * 119.99923 * 0.02562 * 21 20 2 41 41 H 1.07999 * 120.00237 * 180.27954 * 22 21 20 42 42 H 1.07994 * 119.99776 * 179.83540 * 23 22 21 43 43 H 1.08003 * 119.99762 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00144 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6397 0.0304 -2.4462 6 6 2.4769 1.2246 -2.6224 7 6 1.8898 2.0945 -3.7039 8 1 0.9851 1.7909 -4.2095 9 6 2.5072 3.2786 -4.0472 10 7 3.6087 3.6486 -3.4312 11 14 1.7792 4.3572 -5.3873 12 1 0.5470 3.7218 -5.9194 13 1 1.4446 5.6895 -4.8231 14 1 2.7670 4.5182 -6.4844 15 6 1.6810 -0.8224 -3.6416 16 1 1.5516 -0.2068 -4.5318 17 6 3.0305 -1.5402 -3.7097 18 6 0.5562 -1.8570 -3.5691 19 8 -0.7063 -1.1877 -3.5539 20 6 2.0323 -0.7105 1.2304 21 6 1.6936 -2.0323 1.4520 22 6 2.1580 -2.6853 2.5784 23 6 2.9535 -2.0137 3.4880 24 6 3.2879 -0.6904 3.2690 25 6 2.8270 -0.0387 2.1404 26 1 -0.3634 0.5918 -0.8402 27 1 -0.3633 0.4317 0.9326 28 1 -0.3634 -1.0235 -0.0924 29 1 3.1271 -0.7906 -1.2105 30 1 1.6132 -1.7234 -1.2900 31 1 2.5144 1.7832 -1.6872 32 1 3.4852 0.9229 -2.9061 33 1 4.0433 4.4814 -3.6730 34 1 3.1599 -2.1557 -2.8196 35 1 3.0613 -2.1726 -4.5968 36 1 3.8318 -0.8031 -3.7614 37 1 0.6092 -2.5130 -4.4380 38 1 0.6648 -2.4486 -2.6601 39 1 -1.4667 -1.7834 -3.5082 40 1 1.0694 -2.5559 0.7432 41 1 1.8972 -3.7193 2.7493 42 1 3.3141 -2.5231 4.3693 43 1 3.9090 -0.1656 3.9799 44 1 3.0882 0.9951 1.9694 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411736703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:01 Heat of formation + Delta-G solvation = -30.077661 kcal Electronic energy + Delta-G solvation = -22346.300212 eV Core-core repulsion = 19263.210700 eV Total energy + Delta-G solvation = -3083.089512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.42427 -38.03876 -35.75524 -34.06177 -32.57265 -30.76098 -30.25915 -28.93527 -27.03515 -25.73413 -24.70178 -23.00321 -22.24083 -21.98676 -19.99533 -18.39484 -16.85062 -16.75424 -16.17520 -15.50385 -15.17677 -14.91420 -14.52516 -14.22770 -13.75694 -13.44680 -13.22474 -13.13064 -12.79625 -12.56456 -12.31579 -11.95713 -11.82152 -11.79045 -11.57392 -11.34888 -11.10436 -10.97752 -10.81572 -10.60080 -10.50034 -10.30427 -10.10078 -10.00173 -9.54428 -9.43857 -9.04305 -8.77546 -8.48216 -8.36599 -7.06447 -5.96151 -3.95641 1.53456 1.54684 3.35216 3.42849 3.49309 3.94989 4.48466 4.68488 4.84289 5.00378 5.07293 5.17698 5.31294 5.39208 5.44700 5.57999 5.65644 5.68419 5.71366 5.75633 5.88004 5.89666 5.95604 6.03944 6.14502 6.17165 6.21519 6.28826 6.41087 6.51094 6.59274 6.61919 6.62191 6.66782 6.83769 6.96145 7.02024 7.18238 7.38709 7.45279 7.91333 8.10288 8.21062 8.31406 8.65556 9.14336 9.68255 11.14771 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.005266 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.954408 B = 5315.603785 C = 6218.994712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.051 4.051 3 H 0.083 0.917 4 C 0.066 3.934 5 N -0.514 5.514 6 C 0.191 3.809 7 C -0.500 4.500 8 H 0.066 0.934 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.287 1.287 15 C 0.085 3.915 16 H 0.100 0.900 17 C -0.180 4.180 18 C 0.088 3.912 19 O -0.548 6.548 20 C -0.061 4.061 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.120 4.120 25 C -0.117 4.117 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.024 0.976 30 H 0.057 0.943 31 H 0.031 0.969 32 H -0.008 1.008 33 H 0.259 0.741 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.361 0.639 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 -13.397 8.705 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.070 4.070 3 H 0.102 0.898 4 C -0.062 4.062 5 N -0.237 5.237 6 C 0.066 3.934 7 C -0.538 4.538 8 H 0.084 0.916 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.213 1.213 15 C -0.024 4.024 16 H 0.118 0.882 17 C -0.239 4.239 18 C 0.010 3.990 19 O -0.350 6.350 20 C -0.061 4.061 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.138 4.138 25 C -0.135 4.135 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.009 0.991 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.205 0.795 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.282 -12.547 8.734 15.636 hybrid contribution 0.398 -0.156 -0.707 0.826 sum -2.884 -12.704 8.026 15.301 Atomic orbital electron populations 1.21614 0.93684 1.01283 1.01481 1.20199 0.96753 0.99616 0.90398 0.89847 1.22040 0.96882 0.96277 0.91029 1.62187 1.55190 1.06620 0.99744 1.19779 0.90147 0.86109 0.97373 1.21258 1.09908 1.04199 1.18483 0.91597 1.24967 0.95027 0.97807 0.96833 1.69971 1.18736 1.23232 1.42198 0.86505 0.79157 0.80446 0.81729 1.19608 1.21139 1.21300 1.21586 0.90568 0.93431 0.96799 0.88231 1.22377 0.99829 1.00916 1.00738 1.22278 0.84872 0.94053 0.97807 1.86745 1.14568 1.36341 1.97337 1.20133 0.95851 0.94045 0.96099 1.21005 1.00352 0.94567 0.97516 1.21085 0.98544 0.99543 0.94939 1.21048 0.99706 0.95012 0.99537 1.21115 1.00123 0.94937 0.97651 1.21193 0.97826 1.00233 0.94286 0.90199 0.94310 0.93850 0.95784 0.92421 0.95141 0.99068 0.93166 0.93265 0.93123 0.91333 0.94792 0.94763 0.79536 0.86373 0.86600 0.86683 0.86447 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 8.75 37.15 0.32 -1.67 16 2 C -0.05 -0.87 2.61 -91.78 -0.24 -1.11 16 3 H 0.08 1.62 6.42 -51.93 -0.33 1.29 16 4 C 0.07 1.19 2.65 -3.83 -0.01 1.18 16 5 N -0.51 -10.75 3.77 -228.08 -0.86 -11.61 16 6 C 0.19 4.89 4.45 -4.98 -0.02 4.86 16 7 C -0.50 -14.04 8.31 -34.44 -0.29 -14.32 16 8 H 0.07 1.89 7.23 -52.49 -0.38 1.51 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 11 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.09 1.63 2.43 -67.71 -0.16 1.46 16 16 H 0.10 2.21 6.60 -51.93 -0.34 1.86 16 17 C -0.18 -3.04 8.48 37.16 0.32 -2.73 16 18 C 0.09 1.37 6.43 37.15 0.24 1.61 16 19 O -0.55 -9.01 13.56 -35.23 -0.48 -9.49 16 20 C -0.06 -0.92 4.78 -104.62 -0.50 -1.42 16 21 C -0.12 -1.56 8.81 -39.58 -0.35 -1.91 16 22 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 23 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 24 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 25 C -0.12 -1.70 9.67 -39.58 -0.38 -2.08 16 26 H 0.08 1.50 7.88 -51.93 -0.41 1.09 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.64 7.56 -51.93 -0.39 0.24 16 29 H 0.02 0.46 7.35 -51.93 -0.38 0.08 16 30 H 0.06 0.93 5.34 -51.93 -0.28 0.66 16 31 H 0.03 0.84 6.58 -51.93 -0.34 0.50 16 32 H -0.01 -0.23 6.60 -51.93 -0.34 -0.57 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.05 0.76 6.64 -51.93 -0.34 0.42 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.32 6.74 -51.93 -0.35 0.97 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.03 0.49 6.36 -51.93 -0.33 0.16 16 39 H 0.36 3.96 9.12 45.56 0.42 4.37 16 40 H 0.12 1.46 7.22 -52.49 -0.38 1.08 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.12 1.74 7.95 -52.49 -0.42 1.32 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -31.20 346.95 -9.04 -40.24 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.28 Total: 5.19 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -2.37 Total: -20.41 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.12 Total: -37.72 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.48 Total: -9.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.20 -9.04 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411736703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.164 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds