Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32272 * 119.90217 * 2 1 4 4 C 1.31918 * 120.08492 * 179.97438 * 3 2 1 5 5 C 1.50708 * 120.05572 * 179.97438 * 4 3 2 6 6 C 1.39339 * 119.89526 * 0.02562 * 4 3 2 7 7 N 1.38990 * 120.09970 * 179.97438 * 6 4 3 8 8 C 1.46497 * 120.00353 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47544 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47054 * 300.00021 * 9 8 7 11 11 C 1.52999 * 109.47354 * 59.99638 * 9 8 7 12 12 C 1.53005 * 109.47444 * 179.97438 * 9 8 7 13 13 C 1.50698 * 109.47107 * 179.97438 * 12 9 8 14 14 H 1.07995 * 120.00054 * 0.02562 * 13 12 9 15 15 C 1.37872 * 119.99725 * 179.97438 * 13 12 9 16 16 N 1.31520 * 120.00077 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47255 * 90.00204 * 17 15 13 19 19 H 1.48502 * 109.47190 * 210.00296 * 17 15 13 20 20 H 1.48502 * 109.47184 * 329.99880 * 17 15 13 21 21 N 1.32660 * 119.80307 * 359.97438 * 6 4 3 22 22 C 1.32247 * 119.91230 * 359.72104 * 21 6 4 23 23 C 1.50697 * 119.94714 * 180.29402 * 22 21 6 24 24 H 1.09002 * 109.47152 * 89.99988 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00089 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00070 * 1 2 3 27 27 H 1.08997 * 109.47001 * 90.00171 * 5 4 3 28 28 H 1.08994 * 109.47278 * 210.00656 * 5 4 3 29 29 H 1.09001 * 109.46795 * 330.00010 * 5 4 3 30 30 H 0.97004 * 119.99733 * 0.02562 * 7 6 4 31 31 H 1.09003 * 109.46816 * 299.99967 * 8 7 6 32 32 H 1.09003 * 109.47198 * 59.99504 * 8 7 6 33 33 H 1.09001 * 109.47393 * 59.99579 * 10 9 8 34 34 H 1.08999 * 109.47399 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.46579 * 299.99960 * 10 9 8 36 36 H 1.09003 * 109.47008 * 60.00176 * 11 9 8 37 37 H 1.08999 * 109.47506 * 180.02562 * 11 9 8 38 38 H 1.08999 * 109.47345 * 300.00393 * 11 9 8 39 39 H 1.09003 * 109.46984 * 299.99864 * 12 9 8 40 40 H 1.08998 * 109.46666 * 59.99436 * 12 9 8 41 41 H 0.97005 * 119.99592 * 179.97438 * 16 15 13 42 42 H 1.08999 * 109.47372 * 270.26397 * 23 22 21 43 43 H 1.09005 * 109.47121 * 30.25687 * 23 22 21 44 44 H 1.09003 * 109.47538 * 150.25899 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1664 1.1466 0.0000 4 6 3.4856 1.1508 0.0005 5 6 4.2363 2.4577 -0.0001 6 6 4.1839 -0.0549 0.0005 7 7 5.5738 -0.0554 0.0005 8 6 6.3059 -1.3244 -0.0001 9 6 7.8102 -1.0454 0.0007 10 6 8.1806 -0.2424 -1.2479 11 6 8.1797 -0.2440 1.2506 12 6 8.5748 -2.3707 0.0008 13 6 10.0565 -2.0958 0.0009 14 1 10.4168 -1.0778 0.0013 15 6 10.9521 -3.1441 0.0015 16 7 10.5132 -4.3839 0.0025 17 14 12.7887 -2.8035 0.0024 18 1 13.2748 -2.7130 1.4027 19 1 13.4969 -3.9054 -0.6972 20 1 13.0547 -1.5211 -0.6978 21 7 3.5183 -1.2024 0.0005 22 6 2.1958 -1.1976 0.0061 23 6 1.4389 -2.5007 0.0128 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 4.4168 2.7734 1.0274 28 1 5.1891 2.3292 -0.5135 29 1 3.6456 3.2156 -0.5147 30 1 6.0591 0.7845 0.0009 31 1 6.0424 -1.8962 0.8897 32 1 6.0423 -1.8955 -0.8903 33 1 7.6360 0.7018 -1.2475 34 1 9.2524 -0.0440 -1.2476 35 1 7.9174 -0.8133 -2.1383 36 1 7.9159 -0.8160 2.1401 37 1 9.2514 -0.0448 1.2509 38 1 7.6351 0.7002 1.2510 39 1 8.3109 -2.9424 0.8905 40 1 8.3116 -2.9420 -0.8894 41 1 11.1433 -5.1214 0.0025 42 1 1.2561 -2.8200 -1.0132 43 1 2.0261 -3.2594 0.5302 44 1 0.4869 -2.3653 0.5263 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413300969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = 21.726414 kcal Electronic energy + Delta-G solvation = -21712.069335 eV Core-core repulsion = 18663.518967 eV Total energy + Delta-G solvation = -3048.550368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.10622 -37.92352 -35.38778 -34.72654 -32.77231 -31.73857 -30.33594 -28.26499 -27.08456 -26.53137 -26.22623 -24.79444 -23.22477 -22.11342 -21.35276 -18.63756 -17.46827 -17.04048 -16.29906 -15.61076 -15.00169 -14.59804 -14.38568 -14.22815 -13.72279 -13.59367 -13.14034 -13.10986 -13.05591 -12.74644 -12.67298 -12.54391 -12.27819 -12.08178 -12.06276 -11.68481 -11.29712 -11.25270 -11.04248 -10.86381 -10.74696 -10.61724 -10.40144 -10.26064 -9.92536 -9.54252 -9.28372 -8.95998 -8.83968 -8.37527 -7.46646 -6.01702 -4.02961 1.04956 1.46073 3.29598 3.30164 3.36798 3.38881 3.82503 4.18521 4.33724 4.44551 4.58099 4.92777 5.04185 5.20523 5.31228 5.33896 5.41000 5.49384 5.51825 5.56727 5.58386 5.61916 5.72712 5.74492 5.81663 5.92557 6.02353 6.15683 6.21126 6.24000 6.38784 6.45810 6.61101 6.65206 7.00640 7.05430 7.07174 7.24713 7.30704 7.62057 7.74408 7.82961 7.97029 8.20566 8.39060 9.01766 9.60272 11.09746 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.003618 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.130105 B = 7738.275173 C = 8424.136519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.007 4.007 3 N -0.404 5.404 4 C 0.008 3.992 5 C -0.091 4.091 6 C 0.367 3.633 7 N -0.702 5.702 8 C 0.138 3.862 9 C -0.074 4.074 10 C -0.127 4.127 11 C -0.127 4.127 12 C 0.038 3.962 13 C -0.511 4.511 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.498 5.498 22 C 0.130 3.870 23 C -0.104 4.104 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.409 0.591 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.027 0.973 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.260 0.740 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.875 9.440 0.025 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.148 4.148 3 N -0.118 5.118 4 C -0.143 4.143 5 C -0.149 4.149 6 C 0.125 3.875 7 N -0.335 5.335 8 C 0.015 3.985 9 C -0.074 4.074 10 C -0.184 4.184 11 C -0.184 4.184 12 C 0.000 4.000 13 C -0.550 4.550 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.221 5.221 22 C -0.012 4.012 23 C -0.162 4.162 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.248 0.752 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.696 9.055 0.018 18.993 hybrid contribution 1.370 0.284 -0.014 1.399 sum -15.326 9.340 0.004 17.948 Atomic orbital electron populations 1.20528 0.88555 1.02966 1.02470 1.21494 0.97653 0.88741 1.06898 1.67795 1.07358 1.29331 1.07321 1.21478 0.90395 0.94923 1.07477 1.20499 0.98744 0.92832 1.02820 1.19220 0.86917 0.89773 0.91545 1.45018 1.00599 1.10451 1.77469 1.21595 0.91460 0.83877 1.01553 1.20927 0.91568 0.99899 0.95022 1.21757 1.01999 0.97302 0.97325 1.21756 1.01981 0.97337 0.97310 1.19071 0.94208 0.89251 0.97431 1.21183 0.90986 0.92519 1.50284 0.92268 1.25010 0.98737 0.95196 0.95532 1.69968 1.34348 0.98210 1.50870 0.86650 0.85781 0.77854 0.78041 1.20764 1.21322 1.19937 1.67894 1.08205 1.27545 1.18504 1.21740 0.89319 0.96378 0.93734 1.20772 0.99174 0.92890 1.03314 0.91170 0.91140 0.90724 0.90680 0.91258 0.90365 0.75186 0.92044 0.92066 0.95387 0.91390 0.93383 0.93375 0.91416 0.95350 0.96379 0.96380 0.93041 0.90094 0.90243 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.78 36.01 0.35 -0.43 16 2 C -0.01 -0.09 6.78 -82.43 -0.56 -0.65 16 3 N -0.40 -5.85 10.34 -5.39 -0.06 -5.91 16 4 C 0.01 0.11 6.81 -82.14 -0.56 -0.45 16 5 C -0.09 -0.98 9.76 36.01 0.35 -0.63 16 6 C 0.37 5.75 7.47 -154.73 -1.16 4.60 16 7 N -0.70 -10.62 5.01 -60.31 -0.30 -10.92 16 8 C 0.14 2.44 4.60 -4.05 -0.02 2.42 16 9 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 10 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 11 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 12 C 0.04 0.92 4.04 -27.88 -0.11 0.81 16 13 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 14 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 N -0.50 -8.13 9.66 -8.48 -0.08 -8.21 16 22 C 0.13 1.78 6.78 -82.44 -0.56 1.22 16 23 C -0.10 -1.02 9.78 36.00 0.35 -0.67 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.51 5.92 -51.93 -0.31 0.21 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.67 6.56 -51.93 -0.34 0.33 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.41 5.45 4.16 -40.82 -0.17 5.28 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 34 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 38 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -30.74 345.91 -8.30 -39.03 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.03 Total: 1.70 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.75 Total: -11.46 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.30 Total: -50.62 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.74 -8.30 -39.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413300969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.761 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds