Wall clock time and date at job start Mon Mar 30 2020 02:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32272 * 119.90217 * 2 1 4 4 C 1.31918 * 120.08492 * 179.97438 * 3 2 1 5 5 C 1.50708 * 120.05572 * 179.97438 * 4 3 2 6 6 C 1.39339 * 119.89526 * 0.02562 * 4 3 2 7 7 N 1.38990 * 120.09970 * 179.97438 * 6 4 3 8 8 C 1.46497 * 120.00353 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47544 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47054 * 300.00021 * 9 8 7 11 11 C 1.52999 * 109.47354 * 59.99638 * 9 8 7 12 12 C 1.53005 * 109.47444 * 179.97438 * 9 8 7 13 13 C 1.50698 * 109.47107 * 179.97438 * 12 9 8 14 14 H 1.07995 * 120.00054 * 0.02562 * 13 12 9 15 15 C 1.37872 * 119.99725 * 179.97438 * 13 12 9 16 16 N 1.31520 * 120.00077 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47255 * 90.00204 * 17 15 13 19 19 H 1.48502 * 109.47190 * 210.00296 * 17 15 13 20 20 H 1.48502 * 109.47184 * 329.99880 * 17 15 13 21 21 N 1.32660 * 119.80307 * 359.97438 * 6 4 3 22 22 C 1.32247 * 119.91230 * 359.72104 * 21 6 4 23 23 C 1.50697 * 119.94714 * 180.29402 * 22 21 6 24 24 H 1.09002 * 109.47152 * 89.99988 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00089 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00070 * 1 2 3 27 27 H 1.08997 * 109.47001 * 90.00171 * 5 4 3 28 28 H 1.08994 * 109.47278 * 210.00656 * 5 4 3 29 29 H 1.09001 * 109.46795 * 330.00010 * 5 4 3 30 30 H 0.97004 * 119.99733 * 0.02562 * 7 6 4 31 31 H 1.09003 * 109.46816 * 299.99967 * 8 7 6 32 32 H 1.09003 * 109.47198 * 59.99504 * 8 7 6 33 33 H 1.09001 * 109.47393 * 59.99579 * 10 9 8 34 34 H 1.08999 * 109.47399 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.46579 * 299.99960 * 10 9 8 36 36 H 1.09003 * 109.47008 * 60.00176 * 11 9 8 37 37 H 1.08999 * 109.47506 * 180.02562 * 11 9 8 38 38 H 1.08999 * 109.47345 * 300.00393 * 11 9 8 39 39 H 1.09003 * 109.46984 * 299.99864 * 12 9 8 40 40 H 1.08998 * 109.46666 * 59.99436 * 12 9 8 41 41 H 0.97005 * 119.99592 * 179.97438 * 16 15 13 42 42 H 1.08999 * 109.47372 * 270.26397 * 23 22 21 43 43 H 1.09005 * 109.47121 * 30.25687 * 23 22 21 44 44 H 1.09003 * 109.47538 * 150.25899 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1664 1.1466 0.0000 4 6 3.4856 1.1508 0.0005 5 6 4.2363 2.4577 -0.0001 6 6 4.1839 -0.0549 0.0005 7 7 5.5738 -0.0554 0.0005 8 6 6.3059 -1.3244 -0.0001 9 6 7.8102 -1.0454 0.0007 10 6 8.1806 -0.2424 -1.2479 11 6 8.1797 -0.2440 1.2506 12 6 8.5748 -2.3707 0.0008 13 6 10.0565 -2.0958 0.0009 14 1 10.4168 -1.0778 0.0013 15 6 10.9521 -3.1441 0.0015 16 7 10.5132 -4.3839 0.0025 17 14 12.7887 -2.8035 0.0024 18 1 13.2748 -2.7130 1.4027 19 1 13.4969 -3.9054 -0.6972 20 1 13.0547 -1.5211 -0.6978 21 7 3.5183 -1.2024 0.0005 22 6 2.1958 -1.1976 0.0061 23 6 1.4389 -2.5007 0.0128 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 4.4168 2.7734 1.0274 28 1 5.1891 2.3292 -0.5135 29 1 3.6456 3.2156 -0.5147 30 1 6.0591 0.7845 0.0009 31 1 6.0424 -1.8962 0.8897 32 1 6.0423 -1.8955 -0.8903 33 1 7.6360 0.7018 -1.2475 34 1 9.2524 -0.0440 -1.2476 35 1 7.9174 -0.8133 -2.1383 36 1 7.9159 -0.8160 2.1401 37 1 9.2514 -0.0448 1.2509 38 1 7.6351 0.7002 1.2510 39 1 8.3109 -2.9424 0.8905 40 1 8.3116 -2.9420 -0.8894 41 1 11.1433 -5.1214 0.0025 42 1 1.2561 -2.8200 -1.0132 43 1 2.0261 -3.2594 0.5302 44 1 0.4869 -2.3653 0.5263 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413300969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:01 Heat of formation + Delta-G solvation = 3.645797 kcal Electronic energy + Delta-G solvation = -21712.853369 eV Core-core repulsion = 18663.518967 eV Total energy + Delta-G solvation = -3049.334402 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.16787 -39.38459 -36.65989 -35.77274 -34.58569 -33.07987 -31.22524 -29.41883 -28.77675 -27.99440 -27.51207 -25.95544 -24.79747 -23.45344 -22.39111 -20.04236 -18.72517 -18.34086 -18.27280 -16.67797 -16.50945 -15.92964 -15.74845 -15.63318 -14.92772 -14.55348 -14.51598 -14.30756 -14.18461 -13.96342 -13.84790 -13.71506 -13.41763 -13.18643 -13.12920 -12.86756 -12.72867 -12.62465 -12.46128 -12.36268 -12.34240 -12.19536 -11.95931 -11.85630 -11.51060 -11.04364 -10.86841 -10.70718 -10.51885 -9.95154 -8.58303 -8.14743 -6.22493 0.00753 0.36460 1.41994 1.42253 1.52640 2.13387 2.44104 2.77587 3.19704 3.27328 3.31751 3.56533 3.97268 4.02536 4.07908 4.14214 4.21831 4.33237 4.57451 4.66006 4.69569 4.72247 4.72443 4.74276 4.78885 4.87155 4.94182 4.98435 5.08141 5.09371 5.10999 5.12581 5.23079 5.39802 5.47595 5.49643 5.53232 5.58302 5.78676 5.88682 6.02601 6.18796 6.31243 6.76667 6.92388 7.12520 7.45260 8.97758 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.003618 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.130105 B = 7738.275173 C = 8424.136519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.006 4.006 3 N -0.421 5.421 4 C 0.005 3.995 5 C -0.090 4.090 6 C 0.344 3.656 7 N -0.697 5.697 8 C 0.160 3.840 9 C -0.066 4.066 10 C -0.120 4.120 11 C -0.120 4.120 12 C 0.044 3.956 13 C -0.515 4.515 14 H 0.072 0.928 15 C -0.004 4.004 16 N -0.938 5.938 17 Si 0.958 3.042 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.260 1.260 21 N -0.530 5.530 22 C 0.111 3.889 23 C -0.101 4.101 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.418 0.582 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.056 0.944 38 H 0.065 0.935 39 H -0.014 1.014 40 H -0.014 1.014 41 H 0.260 0.740 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.796 11.731 0.023 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.147 4.147 3 N -0.136 5.136 4 C -0.145 4.145 5 C -0.148 4.148 6 C 0.104 3.896 7 N -0.333 5.333 8 C 0.035 3.965 9 C -0.067 4.067 10 C -0.177 4.177 11 C -0.178 4.178 12 C 0.006 3.994 13 C -0.553 4.553 14 H 0.090 0.910 15 C -0.201 4.201 16 N -0.579 5.579 17 Si 0.783 3.217 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.184 1.184 21 N -0.255 5.255 22 C -0.030 4.030 23 C -0.158 4.158 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.259 0.741 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.640 11.387 0.016 20.996 hybrid contribution 1.490 -0.454 -0.015 1.558 sum -16.150 10.933 0.000 19.503 Atomic orbital electron populations 1.20664 0.85560 1.04325 1.03748 1.22195 0.99633 0.88199 1.04685 1.67932 1.07498 1.29964 1.08196 1.21946 0.90592 0.95637 1.06300 1.20604 0.98961 0.91270 1.03918 1.19424 0.86896 0.90417 0.92884 1.44667 1.00560 1.09463 1.78647 1.21081 0.90743 0.84910 0.99737 1.20729 0.91696 0.97379 0.96859 1.21677 1.01697 0.98560 0.95813 1.21677 1.01713 0.98581 0.95786 1.18929 0.94595 0.91577 0.94299 1.21591 0.91880 0.92987 1.48814 0.91030 1.25933 1.03737 0.94993 0.95440 1.70122 1.35947 0.99280 1.52542 0.85554 0.79868 0.78042 0.78240 1.20153 1.21502 1.18401 1.67876 1.09848 1.28578 1.19157 1.22361 0.88741 0.98285 0.93645 1.20883 0.99816 0.90787 1.04305 0.89764 0.90838 0.88314 0.89412 0.90077 0.89490 0.74085 0.93981 0.94002 0.91602 0.92515 0.94497 0.94500 0.92490 0.91583 0.99598 0.99595 0.93155 0.88939 0.91361 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.78 71.24 0.70 -0.59 16 2 C -0.01 -0.14 6.78 42.47 0.29 0.15 16 3 N -0.42 -11.54 10.34 -170.98 -1.77 -13.31 16 4 C 0.00 0.13 6.81 42.81 0.29 0.42 16 5 C -0.09 -1.71 9.76 71.24 0.70 -1.01 16 6 C 0.34 10.61 7.47 133.04 0.99 11.60 16 7 N -0.70 -20.56 5.01 -344.71 -1.73 -22.29 16 8 C 0.16 5.79 4.60 86.38 0.40 6.18 16 9 C -0.07 -2.53 0.54 -52.18 -0.03 -2.56 16 10 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 11 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 12 C 0.04 2.23 4.04 29.85 0.12 2.35 16 13 C -0.51 -27.67 7.65 25.60 0.20 -27.47 16 14 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 16 N -0.94 -56.98 13.29 21.45 0.28 -56.70 16 17 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 21 N -0.53 -17.42 9.66 -180.75 -1.75 -19.17 16 22 C 0.11 2.94 6.78 42.48 0.29 3.23 16 23 C -0.10 -1.83 9.78 71.23 0.70 -1.13 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.00 5.92 -2.38 -0.01 0.98 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.33 6.56 -2.39 -0.02 1.32 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.42 10.22 4.16 -92.71 -0.39 9.84 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 34 H 0.06 2.08 6.62 -2.39 -0.02 2.06 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 2.08 6.62 -2.39 -0.02 2.06 16 38 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 39 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.11 1.28 5.93 -2.39 -0.01 1.26 16 Total: -1.00 -68.99 345.91 3.93 -65.06 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.61 Total: 16.50 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 6.26 Total: -15.74 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.96 Total: -111.46 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.99 3.93 -65.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413300969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.701 kcal (2) G-P(sol) polarization free energy of solvation -68.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds