Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.46887 * 2 1 4 4 C 1.40067 * 119.87775 * 125.00430 * 3 2 1 5 5 C 1.35713 * 119.52512 * 180.02562 * 4 3 2 6 6 C 1.50706 * 120.36852 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47094 * 274.97494 * 6 5 4 8 8 N 1.36213 * 119.25947 * 359.97438 * 5 4 3 9 9 H 0.96994 * 120.13624 * 180.02562 * 8 5 4 10 10 C 1.37504 * 119.73040 * 359.97438 * 8 5 4 11 11 N 1.31441 * 119.76844 * 180.02562 * 10 8 5 12 12 C 1.46499 * 119.99795 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46840 * 120.00343 * 12 11 10 14 14 C 1.53002 * 109.47233 * 299.99500 * 13 12 11 15 15 C 1.52996 * 109.47328 * 59.99969 * 13 12 11 16 16 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46828 * 90.00241 * 20 18 16 22 22 H 1.48494 * 109.47178 * 209.99936 * 20 18 16 23 23 H 1.48500 * 109.47075 * 330.00183 * 20 18 16 24 24 N 1.31391 * 119.87196 * 305.29324 * 3 2 1 25 25 H 1.09003 * 109.47508 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47660 * 300.00034 * 1 2 3 27 27 H 1.08994 * 109.47631 * 60.00476 * 1 2 3 28 28 H 1.08999 * 109.46997 * 239.99630 * 2 1 3 29 29 H 1.09004 * 109.47112 * 119.99567 * 2 1 3 30 30 H 1.08003 * 120.23552 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.47253 * 34.97704 * 6 5 4 32 32 H 1.09006 * 109.46415 * 154.97776 * 6 5 4 33 33 H 1.08997 * 109.47441 * 60.00694 * 7 6 5 34 34 H 1.09007 * 109.47159 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47242 * 300.00217 * 7 6 5 36 36 H 1.09002 * 109.47391 * 0.02562 * 12 11 10 37 37 H 1.09001 * 109.46813 * 240.00069 * 12 11 10 38 38 H 1.09000 * 109.46986 * 60.00203 * 14 13 12 39 39 H 1.08993 * 109.47662 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.47075 * 300.00932 * 14 13 12 41 41 H 1.08992 * 109.47554 * 59.99639 * 15 13 12 42 42 H 1.09004 * 109.47108 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.46870 * 299.99783 * 15 13 12 44 44 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9216 1.8464 0.9948 5 6 3.3690 3.1277 0.9883 6 6 4.3268 3.6057 2.0492 7 6 3.5402 4.0454 3.2856 8 7 2.9436 3.9764 0.0116 9 1 3.2555 4.8947 -0.0055 10 6 2.0709 3.5259 -0.9508 11 7 1.6603 4.3442 -1.8940 12 6 0.7301 3.8696 -2.9214 13 6 -0.5546 4.6990 -2.8685 14 6 -1.2001 4.5520 -1.4892 15 6 -0.2223 6.1708 -3.1219 16 6 -1.5117 4.2104 -3.9251 17 1 -1.2316 3.3907 -4.5700 18 6 -2.7451 4.8099 -4.0683 19 7 -3.0864 5.8078 -3.2826 20 14 -3.9312 4.2048 -5.3784 21 1 -4.7930 3.1369 -4.8107 22 1 -4.7797 5.3337 -5.8375 23 1 -3.1639 3.6626 -6.5285 24 7 1.6297 2.2572 -0.9299 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.2484 1.1601 1.7621 31 1 5.0043 2.7955 2.3187 32 1 4.9023 4.4484 1.6659 33 1 2.9648 3.2028 3.6688 34 1 4.2329 4.3916 4.0527 35 1 2.8627 4.8556 3.0160 36 1 0.4930 2.8212 -2.7407 37 1 1.1899 3.9743 -3.9041 38 1 -0.5080 4.9050 -0.7247 39 1 -2.1155 5.1424 -1.4516 40 1 -1.4368 3.5034 -1.3086 41 1 0.2376 6.2755 -4.1045 42 1 -1.1376 6.7615 -3.0847 43 1 0.4698 6.5238 -2.3574 44 1 -3.9542 6.2293 -3.3831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413401430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = 46.338034 kcal Electronic energy + Delta-G solvation = -22138.609998 eV Core-core repulsion = 19091.126870 eV Total energy + Delta-G solvation = -3047.483128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73782 -36.45687 -35.86849 -34.65092 -32.46757 -31.57801 -30.74917 -29.07538 -25.59500 -25.37491 -25.11012 -24.70980 -23.72979 -21.07776 -20.83890 -18.29699 -18.03093 -17.42104 -15.76711 -15.52572 -14.89253 -14.61732 -14.50846 -14.21264 -14.00505 -13.88831 -13.21260 -13.04426 -12.70532 -12.48029 -12.29391 -11.98787 -11.85737 -11.56264 -11.26461 -11.16207 -11.11253 -11.02412 -10.68658 -10.51282 -10.45733 -10.09371 -9.94950 -9.90989 -9.56474 -9.24084 -9.03138 -8.65357 -8.20115 -8.09247 -6.92036 -5.77208 -3.87174 1.02942 2.08246 2.94898 3.39735 3.45701 3.49947 4.09695 4.13978 4.41671 4.56303 4.65410 4.83803 4.94799 5.21670 5.27730 5.33182 5.41190 5.46025 5.47257 5.49511 5.63642 5.79242 5.83970 5.96099 6.05469 6.23148 6.28222 6.53708 6.68912 6.80189 6.89915 6.99859 7.18582 7.33263 7.34823 7.41811 7.57754 7.71195 7.92475 7.94061 8.34709 8.42391 8.50989 8.68490 8.87007 9.15337 9.76465 11.22942 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.004716 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.426095 B = 5935.547850 C = 6666.979859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C 0.246 3.754 4 C -0.309 4.309 5 C 0.219 3.781 6 C -0.091 4.091 7 C -0.149 4.149 8 N -0.618 5.618 9 H 0.416 0.584 10 C 0.481 3.519 11 N -0.563 5.563 12 C 0.084 3.916 13 C 0.076 3.924 14 C -0.117 4.117 15 C -0.118 4.118 16 C -0.500 4.500 17 H 0.052 0.948 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.888 3.112 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.275 1.275 24 N -0.519 5.519 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.002 0.998 39 H 0.076 0.924 40 H 0.017 0.983 41 H 0.016 0.984 42 H 0.073 0.927 43 H 0.015 0.985 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.702 -8.165 14.213 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C 0.072 3.928 4 C -0.340 4.340 5 C 0.099 3.901 6 C -0.129 4.129 7 C -0.207 4.207 8 N -0.237 5.237 9 H 0.253 0.747 10 C 0.114 3.886 11 N -0.290 5.290 12 C -0.046 4.046 13 C 0.075 3.925 14 C -0.174 4.174 15 C -0.176 4.176 16 C -0.539 4.539 17 H 0.070 0.930 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.716 3.284 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.200 1.200 24 N -0.239 5.239 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.158 0.842 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.021 0.979 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.092 0.908 43 H 0.034 0.966 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.918 -7.104 12.947 20.293 hybrid contribution -0.261 -0.432 -0.074 0.510 sum 13.656 -7.536 12.873 20.224 Atomic orbital electron populations 1.21680 0.93551 1.01598 1.03441 1.20548 0.97413 0.90373 1.02967 1.21807 0.87661 0.95596 0.87782 1.20828 1.10481 0.95931 1.06744 1.20735 0.91573 0.90268 0.87516 1.20815 0.96146 1.02736 0.93237 1.21763 1.00460 1.02275 0.96176 1.42221 1.42668 1.14443 1.24377 0.74682 1.20173 0.90461 0.87068 0.90865 1.72617 1.19087 1.30828 1.06445 1.22036 0.92671 0.98986 0.90878 1.18073 0.88948 0.91923 0.93515 1.21654 1.00927 0.98666 0.96190 1.21640 0.99961 0.99339 0.96664 1.21150 0.99698 1.16545 1.16478 0.92970 1.24888 0.97831 0.95003 0.95947 1.69858 1.20973 1.23441 1.38399 0.86664 0.81180 0.78227 0.82301 1.20884 1.21407 1.20045 1.69431 1.26523 1.01947 1.25970 0.92465 0.92923 0.90843 0.89695 0.90385 0.84171 0.88420 0.89988 0.91627 0.91410 0.92149 0.93072 0.92848 0.97927 0.90517 0.96404 0.96466 0.90837 0.96600 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.77 37.16 0.36 -1.47 16 2 C -0.07 -0.84 6.35 -27.89 -0.18 -1.02 16 3 C 0.25 3.52 6.23 -82.10 -0.51 3.01 16 4 C -0.31 -3.47 9.34 -39.80 -0.37 -3.85 16 5 C 0.22 2.38 6.10 -81.55 -0.50 1.88 16 6 C -0.09 -0.59 6.18 -27.88 -0.17 -0.76 16 7 C -0.15 -0.93 9.89 37.15 0.37 -0.56 16 8 N -0.62 -8.83 5.41 -10.04 -0.05 -8.89 16 9 H 0.42 5.23 8.84 -40.82 -0.36 4.87 16 10 C 0.48 9.29 8.42 -323.02 -2.72 6.57 16 11 N -0.56 -12.71 9.14 -62.36 -0.57 -13.28 16 12 C 0.08 2.11 5.16 -4.04 -0.02 2.08 16 13 C 0.08 2.09 0.57 -155.66 -0.09 2.00 16 14 C -0.12 -3.19 8.09 37.16 0.30 -2.89 16 15 C -0.12 -3.22 8.09 37.16 0.30 -2.92 16 16 C -0.50 -14.60 8.01 -34.44 -0.28 -14.87 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.83 5.15 -17.82 -0.09 1.74 16 19 N -0.89 -26.16 9.35 55.43 0.52 -25.64 16 20 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 N -0.52 -9.74 8.27 -10.01 -0.08 -9.82 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.18 7.95 -51.93 -0.41 0.77 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 30 H 0.14 1.10 7.98 -52.48 -0.42 0.68 16 31 H 0.10 0.45 8.12 -51.93 -0.42 0.02 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 1.31 6.65 -51.93 -0.35 0.96 16 37 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.00 0.05 7.60 -51.93 -0.39 -0.35 16 39 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 2.14 6.07 -51.93 -0.32 1.82 16 43 H 0.01 0.40 7.60 -51.93 -0.39 0.00 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -34.09 352.67 -11.05 -45.14 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.56 Total: 1.03 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.59 Total: -11.06 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.19 Total: -57.63 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.09 -11.05 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413401430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.477 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds