Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.46887 * 2 1 4 4 C 1.40067 * 119.87775 * 125.00430 * 3 2 1 5 5 C 1.35713 * 119.52512 * 180.02562 * 4 3 2 6 6 C 1.50706 * 120.36852 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47094 * 274.97494 * 6 5 4 8 8 N 1.36213 * 119.25947 * 359.97438 * 5 4 3 9 9 H 0.96994 * 120.13624 * 180.02562 * 8 5 4 10 10 C 1.37504 * 119.73040 * 359.97438 * 8 5 4 11 11 N 1.31441 * 119.76844 * 180.02562 * 10 8 5 12 12 C 1.46499 * 119.99795 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46840 * 120.00343 * 12 11 10 14 14 C 1.53002 * 109.47233 * 299.99500 * 13 12 11 15 15 C 1.52996 * 109.47328 * 59.99969 * 13 12 11 16 16 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46828 * 90.00241 * 20 18 16 22 22 H 1.48494 * 109.47178 * 209.99936 * 20 18 16 23 23 H 1.48500 * 109.47075 * 330.00183 * 20 18 16 24 24 N 1.31391 * 119.87196 * 305.29324 * 3 2 1 25 25 H 1.09003 * 109.47508 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47660 * 300.00034 * 1 2 3 27 27 H 1.08994 * 109.47631 * 60.00476 * 1 2 3 28 28 H 1.08999 * 109.46997 * 239.99630 * 2 1 3 29 29 H 1.09004 * 109.47112 * 119.99567 * 2 1 3 30 30 H 1.08003 * 120.23552 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.47253 * 34.97704 * 6 5 4 32 32 H 1.09006 * 109.46415 * 154.97776 * 6 5 4 33 33 H 1.08997 * 109.47441 * 60.00694 * 7 6 5 34 34 H 1.09007 * 109.47159 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47242 * 300.00217 * 7 6 5 36 36 H 1.09002 * 109.47391 * 0.02562 * 12 11 10 37 37 H 1.09001 * 109.46813 * 240.00069 * 12 11 10 38 38 H 1.09000 * 109.46986 * 60.00203 * 14 13 12 39 39 H 1.08993 * 109.47662 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.47075 * 300.00932 * 14 13 12 41 41 H 1.08992 * 109.47554 * 59.99639 * 15 13 12 42 42 H 1.09004 * 109.47108 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.46870 * 299.99783 * 15 13 12 44 44 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9216 1.8464 0.9948 5 6 3.3690 3.1277 0.9883 6 6 4.3268 3.6057 2.0492 7 6 3.5402 4.0454 3.2856 8 7 2.9436 3.9764 0.0116 9 1 3.2555 4.8947 -0.0055 10 6 2.0709 3.5259 -0.9508 11 7 1.6603 4.3442 -1.8940 12 6 0.7301 3.8696 -2.9214 13 6 -0.5546 4.6990 -2.8685 14 6 -1.2001 4.5520 -1.4892 15 6 -0.2223 6.1708 -3.1219 16 6 -1.5117 4.2104 -3.9251 17 1 -1.2316 3.3907 -4.5700 18 6 -2.7451 4.8099 -4.0683 19 7 -3.0864 5.8078 -3.2826 20 14 -3.9312 4.2048 -5.3784 21 1 -4.7930 3.1369 -4.8107 22 1 -4.7797 5.3337 -5.8375 23 1 -3.1639 3.6626 -6.5285 24 7 1.6297 2.2572 -0.9299 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.2484 1.1601 1.7621 31 1 5.0043 2.7955 2.3187 32 1 4.9023 4.4484 1.6659 33 1 2.9648 3.2028 3.6688 34 1 4.2329 4.3916 4.0527 35 1 2.8627 4.8556 3.0160 36 1 0.4930 2.8212 -2.7407 37 1 1.1899 3.9743 -3.9041 38 1 -0.5080 4.9050 -0.7247 39 1 -2.1155 5.1424 -1.4516 40 1 -1.4368 3.5034 -1.3086 41 1 0.2376 6.2755 -4.1045 42 1 -1.1376 6.7615 -3.0847 43 1 0.4698 6.5238 -2.3574 44 1 -3.9542 6.2293 -3.3831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413401430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = 26.690962 kcal Electronic energy + Delta-G solvation = -22139.461959 eV Core-core repulsion = 19091.126870 eV Total energy + Delta-G solvation = -3048.335089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90835 -38.27473 -36.93597 -36.05077 -33.93601 -32.76218 -32.34442 -30.32573 -27.58122 -27.32816 -26.69864 -26.31047 -24.62289 -22.43574 -21.84764 -20.20169 -19.17746 -18.55922 -17.93501 -16.78230 -16.63748 -16.17956 -15.39550 -15.33205 -15.07550 -14.86148 -14.71918 -14.45099 -14.23385 -13.98858 -13.57777 -13.34133 -13.18195 -13.12406 -12.70355 -12.57560 -12.51080 -12.35876 -12.19530 -12.15466 -12.11524 -11.93561 -11.72669 -11.45026 -11.35631 -10.85582 -10.72965 -10.67708 -10.38438 -9.85136 -8.35706 -7.96489 -6.16239 -0.04200 0.92147 1.40405 1.40983 1.51817 1.77918 2.45594 2.83911 3.22267 3.33195 3.38126 3.93800 4.19726 4.22749 4.33162 4.38042 4.38854 4.47874 4.67218 4.71764 4.74939 4.81900 4.84341 4.92170 4.99394 5.04948 5.05220 5.12600 5.16798 5.19297 5.27184 5.33832 5.38021 5.42262 5.47084 5.48605 5.64595 5.66866 5.71163 6.08949 6.15605 6.27611 6.49750 6.89577 7.21163 7.38610 7.50929 9.00786 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.004716 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.426095 B = 5935.547850 C = 6666.979859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.246 3.754 4 C -0.309 4.309 5 C 0.223 3.777 6 C -0.084 4.084 7 C -0.148 4.148 8 N -0.611 5.611 9 H 0.423 0.577 10 C 0.497 3.503 11 N -0.621 5.621 12 C 0.108 3.892 13 C 0.067 3.933 14 C -0.090 4.090 15 C -0.100 4.100 16 C -0.526 4.526 17 H 0.042 0.958 18 C 0.020 3.980 19 N -0.908 5.908 20 Si 0.953 3.047 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.272 1.272 24 N -0.584 5.584 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.188 0.812 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.004 0.996 39 H 0.054 0.946 40 H 0.004 0.996 41 H 0.010 0.990 42 H 0.052 0.948 43 H 0.022 0.978 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.555 -9.840 16.720 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C 0.077 3.923 4 C -0.338 4.338 5 C 0.104 3.896 6 C -0.122 4.122 7 C -0.206 4.206 8 N -0.230 5.230 9 H 0.262 0.738 10 C 0.130 3.870 11 N -0.353 5.353 12 C -0.022 4.022 13 C 0.066 3.934 14 C -0.148 4.148 15 C -0.158 4.158 16 C -0.565 4.565 17 H 0.060 0.940 18 C -0.178 4.178 19 N -0.547 5.547 20 Si 0.778 3.222 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.197 1.197 24 N -0.307 5.307 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.205 0.795 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.023 0.977 41 H 0.029 0.971 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.816 -8.833 15.534 23.863 hybrid contribution -0.680 -0.045 -0.591 0.902 sum 15.135 -8.878 14.943 23.048 Atomic orbital electron populations 1.21623 0.94936 1.02473 1.00949 1.20733 0.96077 0.88955 1.05362 1.22595 0.86567 0.96286 0.86833 1.21354 1.09049 0.96824 1.06571 1.21675 0.91154 0.89878 0.86895 1.21009 0.95318 1.04429 0.91402 1.21777 1.00642 1.01670 0.96514 1.42357 1.41295 1.15468 1.23904 0.73814 1.20396 0.89129 0.87317 0.90133 1.72537 1.22320 1.31750 1.08653 1.21462 0.92196 0.97275 0.91312 1.18113 0.90183 0.92274 0.92784 1.21352 0.99694 0.97132 0.96615 1.21423 0.98758 0.99154 0.96461 1.21397 1.00918 1.16829 1.17317 0.93973 1.25622 0.99227 0.95040 0.97952 1.69985 1.21356 1.23973 1.39384 0.85650 0.78913 0.77950 0.79663 1.20192 1.20522 1.19692 1.69460 1.29668 1.02410 1.29175 0.89881 0.93367 0.95351 0.89292 0.85766 0.79515 0.85087 0.88661 0.91510 0.89145 0.94194 0.94843 0.95140 0.97659 0.92691 0.97672 0.97082 0.92954 0.95905 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.77 71.98 0.70 -2.80 16 2 C -0.07 -1.48 6.35 29.85 0.19 -1.29 16 3 C 0.25 6.61 6.23 43.07 0.27 6.88 16 4 C -0.31 -5.72 9.34 22.13 0.21 -5.51 16 5 C 0.22 4.12 6.10 41.30 0.25 4.37 16 6 C -0.08 -0.68 6.18 29.85 0.18 -0.50 16 7 C -0.15 -1.27 9.89 71.98 0.71 -0.56 16 8 N -0.61 -16.80 5.41 -185.69 -1.01 -17.81 16 9 H 0.42 10.26 8.84 -92.71 -0.82 9.44 16 10 C 0.50 19.55 8.42 261.56 2.20 21.75 16 11 N -0.62 -29.32 9.14 -351.20 -3.21 -32.53 16 12 C 0.11 5.79 5.16 86.38 0.45 6.23 16 13 C 0.07 3.87 0.57 -52.93 -0.03 3.84 16 14 C -0.09 -5.16 8.09 71.98 0.58 -4.57 16 15 C -0.10 -5.69 8.09 71.98 0.58 -5.11 16 16 C -0.53 -32.04 8.01 25.60 0.21 -31.84 16 17 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 18 C 0.02 1.18 5.15 84.66 0.44 1.62 16 19 N -0.91 -54.88 9.35 21.45 0.20 -54.68 16 20 Si 0.95 46.52 29.54 68.60 2.03 48.55 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 24 N -0.58 -22.32 8.27 -185.59 -1.54 -23.85 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.03 0.94 7.95 -2.39 -0.02 0.92 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.12 1.37 7.91 -2.38 -0.02 1.35 16 30 H 0.19 1.70 7.98 -2.91 -0.02 1.68 16 31 H 0.13 0.34 8.12 -2.39 -0.02 0.32 16 32 H 0.09 0.61 8.14 -2.38 -0.02 0.60 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.03 1.84 6.65 -2.39 -0.02 1.82 16 37 H 0.03 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.00 0.25 7.60 -2.39 -0.02 0.23 16 39 H 0.05 3.34 6.07 -2.39 -0.01 3.33 16 40 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.05 3.16 6.07 -2.38 -0.01 3.14 16 43 H 0.02 1.21 7.60 -2.39 -0.02 1.19 16 44 H 0.26 14.83 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -79.67 352.67 3.57 -76.10 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.15 Total: 11.71 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 6.94 Total: -7.48 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -5.55 Total: -128.88 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -79.67 3.57 -76.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413401430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.788 kcal (2) G-P(sol) polarization free energy of solvation -79.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds