Wall clock time and date at job start Mon Mar 30 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35641 * 119.79332 * 2 1 4 4 C 1.41985 * 118.59823 * 180.02562 * 3 2 1 5 5 N 1.31474 * 120.91676 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00246 * 353.71896 * 5 4 3 7 7 C 1.52992 * 109.47245 * 114.38375 * 6 5 4 8 8 C 1.53009 * 109.47110 * 300.00207 * 7 6 5 9 9 C 1.53001 * 109.47377 * 59.99793 * 7 6 5 10 10 C 1.50697 * 109.47278 * 180.02562 * 7 6 5 11 11 H 1.07999 * 119.99887 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00271 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00191 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00152 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47184 * 90.00394 * 14 12 10 16 16 H 1.48503 * 109.47123 * 210.00021 * 14 12 10 17 17 H 1.48495 * 109.47448 * 329.99870 * 14 12 10 18 18 N 1.38040 * 118.16310 * 359.75013 * 4 3 2 19 19 H 0.97001 * 120.31033 * 180.27918 * 18 4 3 20 20 C 1.35653 * 119.37267 * 0.51277 * 18 4 3 21 21 C 1.50699 * 119.28968 * 179.73997 * 20 18 4 22 22 C 1.53006 * 109.47285 * 274.73374 * 21 20 18 23 23 C 1.53008 * 109.47381 * 34.72874 * 21 20 18 24 24 N 1.30407 * 121.41936 * 359.46331 * 20 18 4 25 25 H 1.09004 * 109.47149 * 269.97932 * 1 2 3 26 26 H 1.09004 * 109.47021 * 29.97402 * 1 2 3 27 27 H 1.08994 * 109.47732 * 149.97476 * 1 2 3 28 28 H 1.07996 * 120.70336 * 0.05282 * 3 2 1 29 29 H 1.09002 * 109.46840 * 234.38290 * 6 5 4 30 30 H 1.09000 * 109.46961 * 354.38405 * 6 5 4 31 31 H 1.08995 * 109.46984 * 59.99985 * 8 7 6 32 32 H 1.08997 * 109.47046 * 180.02562 * 8 7 6 33 33 H 1.08995 * 109.46636 * 300.00053 * 8 7 6 34 34 H 1.09002 * 109.47036 * 59.99884 * 9 7 6 35 35 H 1.08997 * 109.47358 * 179.97438 * 9 7 6 36 36 H 1.08995 * 109.47389 * 300.00427 * 9 7 6 37 37 H 0.96998 * 120.00717 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.47623 * 154.73242 * 21 20 18 39 39 H 1.08999 * 109.46557 * 300.00142 * 22 21 20 40 40 H 1.09000 * 109.47344 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47260 * 59.99752 * 22 21 20 42 42 H 1.08995 * 109.47107 * 300.00971 * 23 21 20 43 43 H 1.09004 * 109.46201 * 60.00012 * 23 21 20 44 44 H 1.08991 * 109.47427 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1771 0.0000 4 6 3.6005 1.1475 -0.0006 5 7 4.2994 2.2611 -0.0011 6 6 3.6206 3.5519 -0.1399 7 6 3.7879 4.3575 1.1500 8 6 3.1756 3.5823 2.3184 9 6 5.2764 4.5901 1.4166 10 6 3.0891 5.6850 1.0074 11 1 2.5766 5.9295 0.0888 12 6 3.1033 6.5870 2.0500 13 7 3.7262 6.2887 3.1693 14 14 2.2377 8.2328 1.8730 15 1 0.8309 8.1041 2.3309 16 1 2.9358 9.2506 2.6989 17 1 2.2583 8.6524 0.4487 18 7 4.2265 -0.0828 0.0042 19 1 5.1949 -0.1393 0.0081 20 6 3.4747 -1.2119 -0.0013 21 6 4.1601 -2.5540 -0.0020 22 6 4.5034 -2.9506 -1.4394 23 6 5.4449 -2.4711 0.8248 24 7 2.1716 -1.1610 -0.0007 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6491 2.1170 0.0009 29 1 4.0569 4.1041 -0.9723 30 1 2.5601 3.3862 -0.3298 31 1 3.6807 2.6219 2.4217 32 1 3.2944 4.1564 3.2373 33 1 2.1152 3.4165 2.1285 34 1 5.7127 5.1423 0.5842 35 1 5.3956 5.1644 2.3353 36 1 5.7815 3.6298 1.5199 37 1 3.7365 6.9234 3.9027 38 1 3.4961 -3.3014 0.4323 39 1 3.5882 -3.0097 -2.0284 40 1 4.9988 -3.9216 -1.4399 41 1 5.1674 -2.2033 -1.8737 42 1 6.1088 -1.7237 0.3905 43 1 5.2002 -2.1885 1.8487 44 1 5.9403 -3.4419 0.8246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413403984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:11 Heat of formation + Delta-G solvation = 44.895860 kcal Electronic energy + Delta-G solvation = -22119.541190 eV Core-core repulsion = 19071.995525 eV Total energy + Delta-G solvation = -3047.545665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87569 -36.94056 -35.93596 -34.75926 -32.95600 -31.22698 -30.12444 -27.67136 -27.44970 -25.47947 -25.44062 -24.92959 -24.12432 -21.15116 -20.52406 -18.35318 -18.22742 -17.21651 -15.84996 -15.63448 -15.18561 -14.69755 -14.58568 -14.44318 -13.60034 -13.44698 -13.20488 -12.88486 -12.81068 -12.53729 -12.48561 -12.23438 -12.05245 -11.66925 -11.57431 -11.37806 -11.25487 -11.10889 -10.80216 -10.64237 -10.57957 -10.16868 -10.06763 -9.92474 -9.69138 -9.32266 -9.10088 -8.76026 -8.31610 -8.20684 -6.96063 -5.87532 -3.99014 1.06047 2.33256 2.92790 3.32834 3.39650 3.42965 3.87784 3.91472 4.46505 4.47468 4.72632 4.78648 4.97023 5.19843 5.26115 5.36963 5.42640 5.44987 5.49330 5.57892 5.64351 5.70493 5.71283 5.85278 5.89550 5.96663 6.31649 6.35686 6.45284 6.65777 6.78800 6.95614 7.02427 7.20500 7.26891 7.35959 7.44054 7.57637 7.79702 7.83166 8.20575 8.22302 8.35181 8.54849 8.70246 9.03051 9.65733 11.12399 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026639 B = 0.004289 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.831207 B = 6526.059242 C = 7101.445238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.135 3.865 3 C -0.247 4.247 4 C 0.367 3.633 5 N -0.574 5.574 6 C 0.077 3.923 7 C 0.073 3.927 8 C -0.122 4.122 9 C -0.118 4.118 10 C -0.507 4.507 11 H 0.053 0.947 12 C 0.065 3.935 13 N -0.885 5.885 14 Si 0.889 3.111 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 N -0.617 5.617 19 H 0.414 0.586 20 C 0.407 3.593 21 C -0.043 4.043 22 C -0.144 4.144 23 C -0.158 4.158 24 N -0.558 5.558 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.149 0.851 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.005 0.995 32 H 0.080 0.920 33 H 0.016 0.984 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.016 0.984 37 H 0.258 0.742 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 -18.884 -6.141 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.018 3.982 3 C -0.274 4.274 4 C 0.096 3.904 5 N -0.298 5.298 6 C -0.052 4.052 7 C 0.072 3.928 8 C -0.180 4.180 9 C -0.176 4.176 10 C -0.546 4.546 11 H 0.071 0.929 12 C -0.135 4.135 13 N -0.524 5.524 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 N -0.243 5.243 19 H 0.253 0.747 20 C 0.139 3.861 21 C -0.064 4.064 22 C -0.202 4.202 23 C -0.215 4.215 24 N -0.282 5.282 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.167 0.833 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.024 0.976 32 H 0.098 0.902 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.093 0.907 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.126 -18.850 -5.909 19.755 hybrid contribution -0.519 1.880 0.004 1.950 sum -0.393 -16.970 -5.906 17.972 Atomic orbital electron populations 1.20645 0.89102 1.02991 1.02913 1.20605 0.96539 0.87878 0.93143 1.22372 0.93581 1.00277 1.11159 1.18900 0.88494 0.86484 0.96548 1.72236 1.36997 0.97874 1.22715 1.22291 0.94975 0.87265 1.00681 1.18125 0.93684 0.92241 0.88726 1.21727 0.96680 0.96696 1.02890 1.21630 0.96548 0.97901 1.01490 1.21121 1.33222 1.00216 1.00005 0.92921 1.24890 0.95328 0.98023 0.95302 1.69848 1.42884 1.35350 1.04288 0.86648 0.79620 0.84018 0.77999 1.20834 1.21298 1.20013 1.42662 1.11094 1.03967 1.66552 0.74747 1.22848 0.87839 0.88044 0.87349 1.20270 0.96975 0.90699 0.98449 1.21838 1.02405 1.01981 0.94011 1.21969 0.96046 1.03191 1.00333 1.67768 1.05121 1.28897 1.26463 0.90551 0.90798 0.90858 0.83350 0.91740 0.95051 0.97566 0.90179 0.96464 0.96280 0.90710 0.96499 0.93218 0.87088 0.91593 0.91062 0.92273 0.92129 0.91577 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.18 36.01 0.37 -0.84 16 2 C 0.13 2.08 6.76 -82.67 -0.56 1.52 16 3 C -0.25 -4.39 8.86 -39.08 -0.35 -4.74 16 4 C 0.37 6.76 7.53 -155.63 -1.17 5.59 16 5 N -0.57 -12.16 9.18 -60.07 -0.55 -12.71 16 6 C 0.08 1.79 5.03 -4.05 -0.02 1.77 16 7 C 0.07 1.89 0.57 -155.66 -0.09 1.81 16 8 C -0.12 -3.16 8.09 37.16 0.30 -2.86 16 9 C -0.12 -3.09 8.09 37.16 0.30 -2.79 16 10 C -0.51 -14.13 8.01 -34.44 -0.28 -14.41 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 12 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 13 N -0.88 -25.30 9.35 55.43 0.52 -24.78 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 N -0.62 -8.84 5.23 -9.29 -0.05 -8.89 16 19 H 0.41 5.12 6.95 -40.82 -0.28 4.83 16 20 C 0.41 5.14 6.64 -154.93 -1.03 4.11 16 21 C -0.04 -0.36 3.28 -91.77 -0.30 -0.66 16 22 C -0.14 -0.99 9.18 37.16 0.34 -0.65 16 23 C -0.16 -1.08 8.74 37.16 0.32 -0.76 16 24 N -0.56 -8.04 10.18 -6.81 -0.07 -8.11 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.15 2.78 5.90 -52.49 -0.31 2.47 16 29 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.03 0.70 5.30 -51.93 -0.28 0.43 16 31 H 0.01 0.14 7.44 -51.93 -0.39 -0.25 16 32 H 0.08 2.25 6.07 -51.93 -0.31 1.94 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 2.11 6.07 -51.93 -0.32 1.79 16 36 H 0.02 0.41 7.60 -51.93 -0.39 0.01 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.41 6.67 -51.93 -0.35 0.06 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -31.67 346.58 -9.44 -41.10 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.24 Total: 2.82 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.25 Total: -11.17 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.15 Total: -54.48 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.67 -9.44 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413403984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.000 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds