Wall clock time and date at job start Mon Mar 30 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35641 * 119.79332 * 2 1 4 4 C 1.41985 * 118.59823 * 180.02562 * 3 2 1 5 5 N 1.31474 * 120.91676 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00246 * 353.71896 * 5 4 3 7 7 C 1.52992 * 109.47245 * 114.38375 * 6 5 4 8 8 C 1.53009 * 109.47110 * 300.00207 * 7 6 5 9 9 C 1.53001 * 109.47377 * 59.99793 * 7 6 5 10 10 C 1.50697 * 109.47278 * 180.02562 * 7 6 5 11 11 H 1.07999 * 119.99887 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00271 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00191 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00152 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47184 * 90.00394 * 14 12 10 16 16 H 1.48503 * 109.47123 * 210.00021 * 14 12 10 17 17 H 1.48495 * 109.47448 * 329.99870 * 14 12 10 18 18 N 1.38040 * 118.16310 * 359.75013 * 4 3 2 19 19 H 0.97001 * 120.31033 * 180.27918 * 18 4 3 20 20 C 1.35653 * 119.37267 * 0.51277 * 18 4 3 21 21 C 1.50699 * 119.28968 * 179.73997 * 20 18 4 22 22 C 1.53006 * 109.47285 * 274.73374 * 21 20 18 23 23 C 1.53008 * 109.47381 * 34.72874 * 21 20 18 24 24 N 1.30407 * 121.41936 * 359.46331 * 20 18 4 25 25 H 1.09004 * 109.47149 * 269.97932 * 1 2 3 26 26 H 1.09004 * 109.47021 * 29.97402 * 1 2 3 27 27 H 1.08994 * 109.47732 * 149.97476 * 1 2 3 28 28 H 1.07996 * 120.70336 * 0.05282 * 3 2 1 29 29 H 1.09002 * 109.46840 * 234.38290 * 6 5 4 30 30 H 1.09000 * 109.46961 * 354.38405 * 6 5 4 31 31 H 1.08995 * 109.46984 * 59.99985 * 8 7 6 32 32 H 1.08997 * 109.47046 * 180.02562 * 8 7 6 33 33 H 1.08995 * 109.46636 * 300.00053 * 8 7 6 34 34 H 1.09002 * 109.47036 * 59.99884 * 9 7 6 35 35 H 1.08997 * 109.47358 * 179.97438 * 9 7 6 36 36 H 1.08995 * 109.47389 * 300.00427 * 9 7 6 37 37 H 0.96998 * 120.00717 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.47623 * 154.73242 * 21 20 18 39 39 H 1.08999 * 109.46557 * 300.00142 * 22 21 20 40 40 H 1.09000 * 109.47344 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47260 * 59.99752 * 22 21 20 42 42 H 1.08995 * 109.47107 * 300.00971 * 23 21 20 43 43 H 1.09004 * 109.46201 * 60.00012 * 23 21 20 44 44 H 1.08991 * 109.47427 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1771 0.0000 4 6 3.6005 1.1475 -0.0006 5 7 4.2994 2.2611 -0.0011 6 6 3.6206 3.5519 -0.1399 7 6 3.7879 4.3575 1.1500 8 6 3.1756 3.5823 2.3184 9 6 5.2764 4.5901 1.4166 10 6 3.0891 5.6850 1.0074 11 1 2.5766 5.9295 0.0888 12 6 3.1033 6.5870 2.0500 13 7 3.7262 6.2887 3.1693 14 14 2.2377 8.2328 1.8730 15 1 0.8309 8.1041 2.3309 16 1 2.9358 9.2506 2.6989 17 1 2.2583 8.6524 0.4487 18 7 4.2265 -0.0828 0.0042 19 1 5.1949 -0.1393 0.0081 20 6 3.4747 -1.2119 -0.0013 21 6 4.1601 -2.5540 -0.0020 22 6 4.5034 -2.9506 -1.4394 23 6 5.4449 -2.4711 0.8248 24 7 2.1716 -1.1610 -0.0007 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6491 2.1170 0.0009 29 1 4.0569 4.1041 -0.9723 30 1 2.5601 3.3862 -0.3298 31 1 3.6807 2.6219 2.4217 32 1 3.2944 4.1564 3.2373 33 1 2.1152 3.4165 2.1285 34 1 5.7127 5.1423 0.5842 35 1 5.3956 5.1644 2.3353 36 1 5.7815 3.6298 1.5199 37 1 3.7365 6.9234 3.9027 38 1 3.4961 -3.3014 0.4323 39 1 3.5882 -3.0097 -2.0284 40 1 4.9988 -3.9216 -1.4399 41 1 5.1674 -2.2033 -1.8737 42 1 6.1088 -1.7237 0.3905 43 1 5.2002 -2.1885 1.8487 44 1 5.9403 -3.4419 0.8246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413403984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:11 Heat of formation + Delta-G solvation = 26.654497 kcal Electronic energy + Delta-G solvation = -22120.332195 eV Core-core repulsion = 19071.995525 eV Total energy + Delta-G solvation = -3048.336670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.09737 -38.57998 -37.02204 -36.25162 -34.35765 -32.90376 -31.54632 -28.90277 -28.05338 -27.55966 -27.38027 -26.71345 -25.26728 -22.53824 -21.51762 -20.16426 -19.50001 -18.49218 -17.90058 -16.78890 -16.66548 -16.25433 -15.97273 -15.23307 -15.20201 -14.81307 -14.37575 -14.22762 -14.16435 -13.90786 -13.74143 -13.32614 -13.22413 -13.12017 -13.00998 -12.72488 -12.56883 -12.40447 -12.33302 -12.23334 -12.12615 -12.02330 -11.84891 -11.46222 -11.37241 -10.90758 -10.84519 -10.70537 -10.39628 -9.92696 -8.42418 -7.98100 -6.18365 -0.15034 0.99869 1.41111 1.42121 1.51982 1.70413 2.44545 2.63795 2.90984 3.21620 3.55941 3.89868 3.99336 4.06328 4.10396 4.22070 4.47151 4.55909 4.59262 4.69070 4.74291 4.75802 4.77754 4.87314 4.88730 4.93304 4.95746 5.07282 5.12864 5.16932 5.19602 5.32137 5.34535 5.35699 5.35874 5.46478 5.62924 5.64848 5.73982 6.06716 6.11723 6.25356 6.45680 6.87777 7.00172 7.20886 7.49495 8.98986 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026639 B = 0.004289 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.831207 B = 6526.059242 C = 7101.445238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.161 3.839 3 C -0.299 4.299 4 C 0.379 3.621 5 N -0.616 5.616 6 C 0.093 3.907 7 C 0.064 3.936 8 C -0.100 4.100 9 C -0.102 4.102 10 C -0.528 4.528 11 H 0.048 0.952 12 C 0.021 3.979 13 N -0.907 5.907 14 Si 0.951 3.049 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.271 1.271 18 N -0.607 5.607 19 H 0.424 0.576 20 C 0.416 3.584 21 C -0.039 4.039 22 C -0.141 4.141 23 C -0.157 4.157 24 N -0.570 5.570 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.007 0.993 32 H 0.054 0.946 33 H 0.013 0.987 34 H 0.013 0.987 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.258 0.742 38 H 0.125 0.875 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 -21.224 -6.657 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.043 3.957 3 C -0.327 4.327 4 C 0.109 3.891 5 N -0.343 5.343 6 C -0.037 4.037 7 C 0.063 3.937 8 C -0.158 4.158 9 C -0.160 4.160 10 C -0.566 4.566 11 H 0.066 0.934 12 C -0.177 4.177 13 N -0.546 5.546 14 Si 0.777 3.223 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.196 1.196 18 N -0.232 5.232 19 H 0.265 0.735 20 C 0.150 3.850 21 C -0.059 4.059 22 C -0.199 4.199 23 C -0.215 4.215 24 N -0.294 5.294 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.149 0.851 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.143 0.857 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.237 -21.244 -6.432 22.197 hybrid contribution -0.429 2.332 0.150 2.375 sum -0.666 -18.912 -6.282 19.939 Atomic orbital electron populations 1.20770 0.86783 1.04291 1.03888 1.21131 0.98245 0.87372 0.89001 1.22211 0.93418 1.00588 1.16436 1.19145 0.89141 0.87030 0.93807 1.72203 1.36679 0.97612 1.27801 1.21882 0.94994 0.88397 0.98440 1.18166 0.93025 0.92218 0.90265 1.21460 0.96445 0.96182 1.01671 1.21443 0.97131 0.97540 0.99907 1.21403 1.33724 1.01480 1.00030 0.93398 1.25605 0.95934 1.01235 0.94966 1.69983 1.43541 1.36300 1.04744 0.85670 0.78634 0.79948 0.78042 1.20221 1.20904 1.19579 1.42781 1.11955 1.03243 1.65239 0.73494 1.23975 0.87686 0.89099 0.84285 1.20520 0.97487 0.87943 0.99943 1.21849 1.02219 1.03381 0.92428 1.22005 0.95357 1.04856 0.99251 1.67956 1.05886 1.28026 1.27569 0.89515 0.90105 0.88968 0.85099 0.93218 0.95194 0.97377 0.92683 0.96746 0.96809 0.93011 0.95949 0.93218 0.85701 0.92383 0.88225 0.92633 0.92125 0.92663 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 10.18 71.24 0.72 -1.53 16 2 C 0.16 4.77 6.76 41.66 0.28 5.05 16 3 C -0.30 -10.72 8.86 22.60 0.20 -10.52 16 4 C 0.38 14.01 7.53 134.38 1.01 15.02 16 5 N -0.62 -26.66 9.18 -343.95 -3.16 -29.82 16 6 C 0.09 4.46 5.03 86.38 0.43 4.90 16 7 C 0.06 3.42 0.57 -52.93 -0.03 3.39 16 8 C -0.10 -5.30 8.09 71.99 0.58 -4.72 16 9 C -0.10 -5.52 8.09 71.98 0.58 -4.94 16 10 C -0.53 -30.12 8.01 25.60 0.21 -29.91 16 11 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 12 C 0.02 1.21 5.15 84.65 0.44 1.65 16 13 N -0.91 -52.82 9.35 21.45 0.20 -52.62 16 14 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 18 N -0.61 -16.72 5.23 -183.32 -0.96 -17.67 16 19 H 0.42 9.94 6.95 -92.71 -0.64 9.29 16 20 C 0.42 9.62 6.64 137.96 0.92 10.54 16 21 C -0.04 -0.51 3.28 -11.54 -0.04 -0.55 16 22 C -0.14 -1.45 9.18 71.98 0.66 -0.79 16 23 C -0.16 -1.66 8.74 71.98 0.63 -1.03 16 24 N -0.57 -15.23 10.18 -175.46 -1.79 -17.02 16 25 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.08 1.72 8.07 -2.39 -0.02 1.70 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.13 5.11 5.90 -2.91 -0.02 5.09 16 29 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.03 1.41 5.30 -2.39 -0.01 1.40 16 31 H 0.01 0.38 7.44 -2.39 -0.02 0.36 16 32 H 0.05 3.18 6.07 -2.39 -0.01 3.16 16 33 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 3.00 6.07 -2.39 -0.01 2.98 16 36 H 0.02 1.12 7.60 -2.39 -0.02 1.11 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.65 6.67 -2.39 -0.02 0.64 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -69.38 346.58 3.26 -66.12 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.34 Total: 17.83 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 6.60 Total: -13.43 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -5.70 Total: -117.14 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.38 3.26 -66.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413403984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.775 kcal (2) G-P(sol) polarization free energy of solvation -69.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds