Wall clock time and date at job start Mon Mar 30 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31808 * 119.12712 * 2 1 4 4 C 1.32322 * 120.82135 * 180.02562 * 3 2 1 5 5 C 1.38620 * 119.10168 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.79922 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46996 * 220.00152 * 6 5 4 8 8 C 1.53003 * 109.47234 * 99.99572 * 6 5 4 9 9 N 1.46905 * 109.46891 * 339.99548 * 6 5 4 10 10 C 1.46905 * 110.99943 * 204.99772 * 9 6 5 11 11 C 1.52998 * 109.47225 * 179.97438 * 10 9 6 12 12 C 1.53000 * 109.47268 * 300.00701 * 11 10 9 13 13 C 1.53005 * 109.46894 * 60.00524 * 11 10 9 14 14 C 1.50695 * 109.47060 * 180.02562 * 11 10 9 15 15 H 1.08000 * 120.00108 * 1.35718 * 14 11 10 16 16 C 1.37878 * 120.00117 * 181.36302 * 14 11 10 17 17 N 1.31505 * 120.00449 * 193.95825 * 16 14 11 18 18 Si 1.86804 * 119.99599 * 13.96132 * 16 14 11 19 19 H 1.48503 * 109.47228 * 84.55951 * 18 16 14 20 20 H 1.48505 * 109.47110 * 204.55313 * 18 16 14 21 21 H 1.48497 * 109.47348 * 324.55373 * 18 16 14 22 22 C 1.38575 * 118.39894 * 359.97438 * 5 4 3 23 23 C 1.50698 * 120.44541 * 180.02562 * 22 5 4 24 24 N 1.31780 * 119.12096 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.46788 * 90.00336 * 1 2 3 26 26 H 1.09000 * 109.47639 * 210.00554 * 1 2 3 27 27 H 1.09001 * 109.47030 * 330.01110 * 1 2 3 28 28 H 1.08000 * 120.44650 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.46951 * 299.99837 * 8 6 5 30 30 H 1.08995 * 109.47029 * 60.00351 * 8 6 5 31 31 H 1.09002 * 109.46884 * 180.02562 * 8 6 5 32 32 H 1.00903 * 111.00130 * 81.05020 * 9 6 5 33 33 H 1.08994 * 109.47232 * 300.00853 * 10 9 6 34 34 H 1.09004 * 109.46315 * 60.00054 * 10 9 6 35 35 H 1.08998 * 109.47322 * 69.31271 * 12 11 10 36 36 H 1.08993 * 109.47166 * 189.31481 * 12 11 10 37 37 H 1.09005 * 109.47098 * 309.31566 * 12 11 10 38 38 H 1.08994 * 109.46880 * 59.99526 * 13 11 10 39 39 H 1.09003 * 109.46713 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.46739 * 299.99927 * 13 11 10 41 41 H 0.97005 * 120.00500 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.47091 * 90.00744 * 23 22 5 43 43 H 1.09002 * 109.47286 * 210.00501 * 23 22 5 44 44 H 1.09003 * 109.47356 * 330.00778 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1808 -0.0002 -0.0005 6 6 5.6878 -0.0003 -0.0005 7 1 6.0511 -0.7876 -0.6611 8 6 6.1978 -0.2507 1.4201 9 7 6.1775 1.3011 -0.4743 10 6 7.5249 1.1799 -1.0470 11 6 7.9997 2.5522 -1.5289 12 6 7.0376 3.0791 -2.5955 13 6 8.0332 3.5240 -0.3475 14 6 9.3816 2.4277 -2.1169 15 1 9.8633 1.4623 -2.1641 16 6 10.0309 3.5463 -2.5944 17 7 11.1009 3.4142 -3.3475 18 14 9.3908 5.2495 -2.1716 19 1 9.9265 5.6659 -0.8506 20 1 9.8302 6.2155 -3.2105 21 1 7.9071 5.2215 -2.1177 22 6 3.4712 -1.1905 0.0006 23 6 4.1960 -2.5117 0.0012 24 7 2.1482 -1.1512 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 3.9906 2.1374 -0.0009 29 1 5.8346 0.5366 2.0806 30 1 5.8345 -1.2164 1.7716 31 1 7.2879 -0.2503 1.4202 32 1 6.1599 1.9857 0.2667 33 1 8.2101 0.8041 -0.2872 34 1 7.5009 0.4879 -1.8888 35 1 6.0819 3.3256 -2.1329 36 1 7.4595 3.9724 -3.0559 37 1 6.8859 2.3146 -3.3575 38 1 8.7185 3.1486 0.4123 39 1 8.3710 4.5018 -0.6910 40 1 7.0335 3.6139 0.0774 41 1 11.5576 4.2012 -3.6838 42 1 4.3710 -2.8296 1.0291 43 1 3.5903 -3.2587 -0.5120 44 1 5.1509 -2.4025 -0.5129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414167478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:30 Heat of formation + Delta-G solvation = 32.098336 kcal Electronic energy + Delta-G solvation = -22100.906556 eV Core-core repulsion = 19052.805948 eV Total energy + Delta-G solvation = -3048.100608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17356 -39.26308 -37.10866 -35.35891 -34.22625 -33.32194 -30.83140 -29.80189 -28.66402 -27.93690 -27.07026 -25.93048 -24.76726 -23.31680 -21.76786 -20.68532 -18.68966 -18.07250 -17.55962 -16.97504 -16.50003 -16.13311 -15.77019 -15.41316 -14.90307 -14.79785 -14.45527 -14.40025 -14.19878 -13.97828 -13.86205 -13.77396 -13.59229 -13.25162 -13.15642 -13.12416 -13.04240 -12.55095 -12.48433 -12.29208 -11.97087 -11.86175 -11.58322 -11.47350 -11.43403 -10.93271 -10.55005 -10.32459 -10.16525 -10.00854 -9.25344 -8.27532 -6.26175 -0.03692 0.14726 1.36281 1.40620 1.50469 2.37300 2.74845 3.01112 3.09333 3.13999 3.29623 3.63735 3.81444 4.05635 4.20988 4.23637 4.33580 4.43788 4.47786 4.58634 4.62100 4.64481 4.67641 4.73359 4.81623 4.82603 4.86628 4.97488 4.99898 5.07276 5.11205 5.14321 5.15595 5.18305 5.25584 5.35281 5.58785 5.63884 5.77731 5.89185 6.04774 6.20813 6.36567 6.55962 6.81090 7.17469 7.39449 8.89565 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027961 B = 0.004198 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.170367 B = 6668.322685 C = 7164.616222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.290 3.710 3 N -0.545 5.545 4 C 0.161 3.839 5 C -0.178 4.178 6 C 0.135 3.865 7 H 0.094 0.906 8 C -0.171 4.171 9 N -0.684 5.684 10 C 0.102 3.898 11 C 0.036 3.964 12 C -0.123 4.123 13 C -0.148 4.148 14 C -0.510 4.510 15 H 0.032 0.968 16 C 0.016 3.984 17 N -0.949 5.949 18 Si 0.940 3.060 19 H -0.283 1.283 20 H -0.320 1.320 21 H -0.213 1.213 22 C 0.168 3.832 23 C -0.107 4.107 24 N -0.536 5.536 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.345 0.655 33 H 0.025 0.975 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.031 0.969 38 H 0.048 0.952 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.262 0.738 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.294 -8.401 10.893 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.023 3.977 3 N -0.260 5.260 4 C -0.004 4.004 5 C -0.182 4.182 6 C 0.024 3.976 7 H 0.112 0.888 8 C -0.230 4.230 9 N -0.316 5.316 10 C -0.027 4.027 11 C 0.035 3.965 12 C -0.180 4.180 13 C -0.205 4.205 14 C -0.549 4.549 15 H 0.050 0.950 16 C -0.181 4.181 17 N -0.589 5.589 18 Si 0.771 3.229 19 H -0.210 1.210 20 H -0.250 1.250 21 H -0.137 1.137 22 C 0.022 3.978 23 C -0.164 4.164 24 N -0.252 5.252 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.193 0.807 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.166 0.834 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.488 -8.380 10.194 23.536 hybrid contribution 2.119 0.851 0.430 2.324 sum -17.369 -7.529 10.624 21.708 Atomic orbital electron populations 1.20613 0.83848 1.04763 1.04521 1.23848 0.99552 0.83410 0.90861 1.68333 1.10665 1.30872 1.16117 1.23298 0.88832 0.99517 0.88761 1.21490 0.98286 0.94706 1.03745 1.20260 0.88280 0.92810 0.96294 0.88847 1.22409 1.01641 1.03254 0.95680 1.60549 1.25295 1.07993 1.37781 1.21617 0.86953 0.96980 0.97115 1.18469 0.92546 0.92923 0.92608 1.21998 0.98404 0.98972 0.98630 1.22292 1.00901 0.98357 0.98913 1.21225 1.00859 0.94063 1.38727 0.95010 1.25790 0.95113 1.03306 0.93862 1.70108 1.22925 1.30990 1.34899 0.86404 0.81576 0.79067 0.75852 1.21019 1.24971 1.13689 1.21988 0.89371 0.96759 0.89731 1.20926 0.99940 0.90822 1.04716 1.68170 1.09819 1.30766 1.16445 0.88944 0.88780 0.89024 0.80655 0.92188 0.90497 0.91890 0.83447 0.95658 0.92952 0.92318 0.95321 0.94970 0.93285 0.95535 0.91033 0.92955 0.88041 0.89692 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.32 71.23 0.74 -0.59 16 2 C 0.29 7.20 7.64 138.75 1.06 8.26 16 3 N -0.54 -14.74 10.33 -187.84 -1.94 -16.68 16 4 C 0.16 4.12 10.60 84.71 0.90 5.02 16 5 C -0.18 -4.18 5.11 -19.69 -0.10 -4.28 16 6 C 0.13 2.99 2.28 44.17 0.10 3.09 16 7 H 0.09 2.09 6.19 -2.39 -0.01 2.07 16 8 C -0.17 -3.16 9.11 71.98 0.66 -2.51 16 9 N -0.68 -18.32 4.53 -495.43 -2.25 -20.57 16 10 C 0.10 3.53 4.37 86.30 0.38 3.90 16 11 C 0.04 1.49 0.57 -52.93 -0.03 1.46 16 12 C -0.12 -5.01 7.55 71.98 0.54 -4.47 16 13 C -0.15 -5.52 7.37 71.98 0.53 -4.99 16 14 C -0.51 -27.68 8.62 25.60 0.22 -27.46 16 15 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 16 C 0.02 0.92 5.32 84.66 0.45 1.37 16 17 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 18 Si 0.94 44.28 22.79 68.60 1.56 45.84 16 19 H -0.28 -12.95 7.10 99.48 0.71 -12.24 16 20 H -0.32 -15.62 7.11 99.48 0.71 -14.92 16 21 H -0.21 -8.86 4.65 99.48 0.46 -8.40 16 22 C 0.17 3.83 6.82 42.56 0.29 4.12 16 23 C -0.11 -1.70 9.21 71.24 0.66 -1.04 16 24 N -0.54 -13.46 10.27 -176.04 -1.81 -15.27 16 25 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.18 4.18 6.99 -2.91 -0.02 4.16 16 29 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.08 1.17 7.25 -2.39 -0.02 1.15 16 31 H 0.06 1.24 7.45 -2.39 -0.02 1.23 16 32 H 0.35 8.48 6.12 -89.69 -0.55 7.93 16 33 H 0.03 0.87 7.43 -2.39 -0.02 0.85 16 34 H 0.05 1.95 8.06 -2.39 -0.02 1.93 16 35 H 0.06 2.07 7.88 -2.39 -0.02 2.05 16 36 H 0.03 1.24 4.30 -2.39 -0.01 1.23 16 37 H 0.03 1.33 8.12 -2.38 -0.02 1.31 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.03 1.07 2.25 -2.39 -0.01 1.06 16 40 H 0.07 2.12 6.57 -2.39 -0.02 2.11 16 41 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 42 H 0.10 1.25 7.87 -2.39 -0.02 1.23 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.31 6.27 -2.39 -0.01 1.30 16 Total: -1.00 -67.34 333.52 2.46 -64.88 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.21 Total: 18.74 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 6.39 Total: -18.10 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -5.70 Total: -111.36 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.56 Total: 45.84 kcal Total: -67.34 2.46 -64.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414167478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.979 kcal (2) G-P(sol) polarization free energy of solvation -67.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds