Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38615 * 120.07846 * 2 1 4 4 C 1.38880 * 117.97191 * 179.97438 * 3 2 1 5 5 C 1.38614 * 117.96564 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.07287 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47201 * 95.00197 * 6 5 4 8 8 C 1.46898 * 110.99823 * 193.04282 * 7 6 5 9 9 C 1.50693 * 109.47249 * 190.81423 * 8 7 6 10 10 H 1.08009 * 119.99903 * 4.79369 * 9 8 7 11 11 C 1.37876 * 120.00460 * 184.79623 * 9 8 7 12 12 N 1.31518 * 119.99849 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00342 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47098 * 59.99490 * 13 11 9 15 15 H 1.48493 * 109.47144 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46708 * 299.99757 * 13 11 9 17 17 C 1.46897 * 111.00154 * 69.08828 * 7 6 5 18 18 C 1.53004 * 109.47147 * 50.40015 * 17 7 6 19 19 C 1.52992 * 109.46902 * 34.43880 * 18 17 7 20 20 C 1.52996 * 109.46856 * 154.43909 * 18 17 7 21 21 C 1.52999 * 109.46827 * 274.43652 * 18 17 7 22 22 N 1.31930 * 119.85013 * 359.97438 * 5 4 3 23 23 N 1.28348 * 122.18249 * 359.97438 * 22 5 4 24 24 H 1.09000 * 109.46943 * 89.99559 * 1 2 3 25 25 H 1.09000 * 109.47017 * 209.99883 * 1 2 3 26 26 H 1.09003 * 109.46962 * 329.99361 * 1 2 3 27 27 H 1.07997 * 121.01364 * 0.02562 * 3 2 1 28 28 H 1.07994 * 121.01526 * 179.72907 * 4 3 2 29 29 H 1.09000 * 109.46714 * 215.00539 * 6 5 4 30 30 H 1.08998 * 109.46988 * 334.99613 * 6 5 4 31 31 H 1.09005 * 109.47180 * 310.81512 * 8 7 6 32 32 H 1.08999 * 109.47446 * 70.81218 * 8 7 6 33 33 H 0.96993 * 120.00051 * 180.02562 * 12 11 9 34 34 H 1.09001 * 109.46851 * 170.40140 * 17 7 6 35 35 H 1.08999 * 109.46968 * 290.39952 * 17 7 6 36 36 H 1.08999 * 109.47442 * 61.10362 * 19 18 17 37 37 H 1.09003 * 109.47229 * 181.10011 * 19 18 17 38 38 H 1.09004 * 109.47448 * 301.09724 * 19 18 17 39 39 H 1.09006 * 109.47677 * 59.99866 * 20 18 17 40 40 H 1.08997 * 109.47347 * 179.97438 * 20 18 17 41 41 H 1.09000 * 109.47351 * 300.00111 * 20 18 17 42 42 H 1.09002 * 109.47035 * 74.40687 * 21 18 17 43 43 H 1.09004 * 109.47021 * 194.40138 * 21 18 17 44 44 H 1.08999 * 109.47770 * 314.40081 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1995 0.0000 4 6 3.5896 1.1484 0.0005 5 6 4.1941 -0.0989 0.0005 6 6 5.6971 -0.2096 0.0005 7 7 6.1766 -0.3661 1.3802 8 6 7.6301 -0.1685 1.4579 9 6 8.1228 -0.5926 2.8175 10 1 7.4401 -1.0429 3.5230 11 6 9.4449 -0.4058 3.1609 12 7 10.2764 0.1422 2.3017 13 14 10.0557 -0.9321 4.8459 14 1 9.8439 -2.3921 5.0153 15 1 11.5034 -0.6242 4.9660 16 1 9.3051 -0.1978 5.8960 17 6 5.7934 -1.6752 1.9255 18 6 6.1962 -2.7753 0.9414 19 6 7.4972 -2.3806 0.2398 20 6 6.4038 -4.0874 1.7004 21 6 5.0902 -2.9580 -0.0999 22 7 3.4509 -1.1889 0.0005 23 7 2.1682 -1.1417 0.0010 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6796 2.1449 0.0004 28 1 4.1797 2.0529 -0.0038 29 1 5.9975 -1.0758 -0.5890 30 1 6.1278 0.6925 -0.4338 31 1 8.1199 -0.7681 0.6907 32 1 7.8627 0.8846 1.2994 33 1 11.2066 0.2733 2.5431 34 1 6.3007 -1.8351 2.8769 35 1 4.7147 -1.7028 2.0798 36 1 8.2898 -2.2695 0.9797 37 1 7.7738 -3.1552 -0.4754 38 1 7.3549 -1.4358 -0.2849 39 1 5.4769 -4.3687 2.2004 40 1 6.6903 -4.8713 0.9994 41 1 7.1916 -3.9573 2.4423 42 1 5.1130 -2.1261 -0.8039 43 1 5.2480 -3.8931 -0.6373 44 1 4.1217 -2.9850 0.3995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414378212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = 126.731890 kcal Electronic energy + Delta-G solvation = -23012.285942 eV Core-core repulsion = 19968.288953 eV Total energy + Delta-G solvation = -3043.996989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07072 -39.15758 -34.19758 -33.80495 -33.10568 -32.01099 -29.37751 -27.68330 -27.01356 -26.42854 -25.62530 -24.41859 -23.36958 -22.01329 -20.20684 -18.32368 -17.34801 -16.50688 -16.04940 -15.50850 -15.09743 -14.90615 -14.58057 -14.11351 -13.81900 -13.53994 -13.15444 -12.91659 -12.81342 -12.70223 -12.41982 -12.11666 -11.78795 -11.36684 -11.22815 -10.99664 -10.86394 -10.81841 -10.59948 -10.55693 -10.22526 -10.15502 -10.00112 -9.90198 -9.63187 -9.46310 -9.31192 -8.98688 -8.79929 -8.43119 -6.88049 -6.03715 -4.02757 0.99908 1.10941 3.32468 3.36983 3.39816 3.70289 4.15853 4.42939 4.58879 4.73273 4.76214 5.10435 5.17985 5.29534 5.35709 5.39923 5.42472 5.56389 5.64878 5.67111 5.78666 5.82401 5.99219 6.07437 6.26324 6.29442 6.32486 6.39313 6.41747 6.47706 6.57474 6.63496 6.68519 6.84752 6.95742 7.08606 7.19486 7.32096 7.44703 7.50847 7.77201 8.07683 8.26114 8.57872 8.97511 9.03232 9.59710 11.07230 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023417 B = 0.005204 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.426732 B = 5379.255852 C = 5852.966381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.050 3.950 3 C -0.125 4.125 4 C -0.100 4.100 5 C 0.088 3.912 6 C 0.066 3.934 7 N -0.526 5.526 8 C 0.152 3.848 9 C -0.508 4.508 10 H 0.065 0.935 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.066 3.934 18 C -0.093 4.093 19 C -0.164 4.164 20 C -0.132 4.132 21 C -0.141 4.141 22 N -0.221 5.221 23 N -0.254 5.254 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.446 0.229 -6.285 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.094 4.094 3 C -0.154 4.154 4 C -0.129 4.129 5 C -0.056 4.056 6 C -0.063 4.063 7 N -0.250 5.250 8 C 0.028 3.972 9 C -0.547 4.547 10 H 0.083 0.917 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.062 4.062 18 C -0.095 4.095 19 C -0.220 4.220 20 C -0.190 4.190 21 C -0.198 4.198 22 N -0.063 5.063 23 N -0.096 5.096 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.521 -0.987 -6.010 15.747 hybrid contribution 0.902 0.920 0.530 1.393 sum -13.619 -0.067 -5.480 14.680 Atomic orbital electron populations 1.20608 0.88202 1.03609 1.03049 1.22768 0.98652 0.90945 0.97072 1.22215 0.94762 0.99534 0.98851 1.22318 0.94896 0.99705 0.96026 1.23099 0.99282 0.90235 0.93012 1.21730 0.86373 1.03294 0.94870 1.62391 1.18269 1.29859 1.14472 1.20758 0.80268 0.97630 0.98583 1.21235 0.94014 1.39729 0.99684 0.91715 1.24922 0.96902 0.95387 0.96975 1.69937 1.04567 1.43995 1.35007 0.86672 0.77627 0.79098 0.84723 1.20252 1.21391 1.20311 1.22374 0.98680 0.86325 0.98854 1.21135 0.95541 0.96259 0.96577 1.22897 0.98487 0.99745 1.00877 1.21787 1.00893 0.96508 0.99810 1.22747 0.99098 0.99330 0.98612 1.73750 0.98255 1.25497 1.08839 1.73007 1.02632 1.24863 1.09115 0.90408 0.90278 0.90739 0.83937 0.83475 0.89155 0.90301 0.94107 0.95601 0.92940 0.88909 0.93293 0.89051 0.95238 0.91089 0.93589 0.93834 0.92467 0.91924 0.95498 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.20 36.00 0.37 -0.45 16 2 C 0.05 0.64 6.87 -82.41 -0.57 0.07 16 3 C -0.12 -1.44 9.88 -39.20 -0.39 -1.82 16 4 C -0.10 -1.35 9.85 -39.21 -0.39 -1.74 16 5 C 0.09 1.43 5.66 -82.41 -0.47 0.96 16 6 C 0.07 1.16 4.14 -4.97 -0.02 1.14 16 7 N -0.53 -10.97 4.83 -237.52 -1.15 -12.11 16 8 C 0.15 3.67 4.18 -4.98 -0.02 3.65 16 9 C -0.51 -13.47 7.60 -34.44 -0.26 -13.73 16 10 H 0.06 1.72 5.51 -52.48 -0.29 1.43 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -25.53 13.29 55.43 0.74 -24.80 16 13 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.07 1.33 4.57 -3.82 -0.02 1.32 16 18 C -0.09 -1.71 0.77 -154.51 -0.12 -1.83 16 19 C -0.16 -3.20 6.16 37.15 0.23 -2.98 16 20 C -0.13 -2.28 8.29 37.16 0.31 -1.97 16 21 C -0.14 -2.41 6.52 37.16 0.24 -2.17 16 22 N -0.22 -3.74 5.52 33.60 0.19 -3.55 16 23 N -0.25 -4.02 11.43 33.60 0.38 -3.64 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.09 1.60 2.40 -51.93 -0.12 1.48 16 30 H 0.08 1.30 7.95 -51.93 -0.41 0.89 16 31 H 0.04 1.01 3.41 -53.37 -0.18 0.83 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.09 2.07 4.87 -51.93 -0.25 1.82 16 35 H 0.05 0.99 6.59 -51.93 -0.34 0.65 16 36 H 0.09 2.09 5.83 -51.93 -0.30 1.79 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 1.39 3.22 -51.93 -0.17 1.22 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 42 H 0.06 1.08 3.81 -51.93 -0.20 0.88 16 43 H 0.03 0.43 8.06 -51.93 -0.42 0.01 16 44 H 0.08 1.43 5.85 -51.93 -0.30 1.13 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -29.30 323.04 -7.54 -36.85 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.35 Total: 4.23 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.20 Total: -18.02 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.16 Total: -44.10 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.30 -7.54 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414378212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.578 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds