Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38615 * 120.07846 * 2 1 4 4 C 1.38880 * 117.97191 * 179.97438 * 3 2 1 5 5 C 1.38614 * 117.96564 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.07287 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47201 * 95.00197 * 6 5 4 8 8 C 1.46898 * 110.99823 * 193.04282 * 7 6 5 9 9 C 1.50693 * 109.47249 * 190.81423 * 8 7 6 10 10 H 1.08009 * 119.99903 * 4.79369 * 9 8 7 11 11 C 1.37876 * 120.00460 * 184.79623 * 9 8 7 12 12 N 1.31518 * 119.99849 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00342 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47098 * 59.99490 * 13 11 9 15 15 H 1.48493 * 109.47144 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46708 * 299.99757 * 13 11 9 17 17 C 1.46897 * 111.00154 * 69.08828 * 7 6 5 18 18 C 1.53004 * 109.47147 * 50.40015 * 17 7 6 19 19 C 1.52992 * 109.46902 * 34.43880 * 18 17 7 20 20 C 1.52996 * 109.46856 * 154.43909 * 18 17 7 21 21 C 1.52999 * 109.46827 * 274.43652 * 18 17 7 22 22 N 1.31930 * 119.85013 * 359.97438 * 5 4 3 23 23 N 1.28348 * 122.18249 * 359.97438 * 22 5 4 24 24 H 1.09000 * 109.46943 * 89.99559 * 1 2 3 25 25 H 1.09000 * 109.47017 * 209.99883 * 1 2 3 26 26 H 1.09003 * 109.46962 * 329.99361 * 1 2 3 27 27 H 1.07997 * 121.01364 * 0.02562 * 3 2 1 28 28 H 1.07994 * 121.01526 * 179.72907 * 4 3 2 29 29 H 1.09000 * 109.46714 * 215.00539 * 6 5 4 30 30 H 1.08998 * 109.46988 * 334.99613 * 6 5 4 31 31 H 1.09005 * 109.47180 * 310.81512 * 8 7 6 32 32 H 1.08999 * 109.47446 * 70.81218 * 8 7 6 33 33 H 0.96993 * 120.00051 * 180.02562 * 12 11 9 34 34 H 1.09001 * 109.46851 * 170.40140 * 17 7 6 35 35 H 1.08999 * 109.46968 * 290.39952 * 17 7 6 36 36 H 1.08999 * 109.47442 * 61.10362 * 19 18 17 37 37 H 1.09003 * 109.47229 * 181.10011 * 19 18 17 38 38 H 1.09004 * 109.47448 * 301.09724 * 19 18 17 39 39 H 1.09006 * 109.47677 * 59.99866 * 20 18 17 40 40 H 1.08997 * 109.47347 * 179.97438 * 20 18 17 41 41 H 1.09000 * 109.47351 * 300.00111 * 20 18 17 42 42 H 1.09002 * 109.47035 * 74.40687 * 21 18 17 43 43 H 1.09004 * 109.47021 * 194.40138 * 21 18 17 44 44 H 1.08999 * 109.47770 * 314.40081 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1995 0.0000 4 6 3.5896 1.1484 0.0005 5 6 4.1941 -0.0989 0.0005 6 6 5.6971 -0.2096 0.0005 7 7 6.1766 -0.3661 1.3802 8 6 7.6301 -0.1685 1.4579 9 6 8.1228 -0.5926 2.8175 10 1 7.4401 -1.0429 3.5230 11 6 9.4449 -0.4058 3.1609 12 7 10.2764 0.1422 2.3017 13 14 10.0557 -0.9321 4.8459 14 1 9.8439 -2.3921 5.0153 15 1 11.5034 -0.6242 4.9660 16 1 9.3051 -0.1978 5.8960 17 6 5.7934 -1.6752 1.9255 18 6 6.1962 -2.7753 0.9414 19 6 7.4972 -2.3806 0.2398 20 6 6.4038 -4.0874 1.7004 21 6 5.0902 -2.9580 -0.0999 22 7 3.4509 -1.1889 0.0005 23 7 2.1682 -1.1417 0.0010 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6796 2.1449 0.0004 28 1 4.1797 2.0529 -0.0038 29 1 5.9975 -1.0758 -0.5890 30 1 6.1278 0.6925 -0.4338 31 1 8.1199 -0.7681 0.6907 32 1 7.8627 0.8846 1.2994 33 1 11.2066 0.2733 2.5431 34 1 6.3007 -1.8351 2.8769 35 1 4.7147 -1.7028 2.0798 36 1 8.2898 -2.2695 0.9797 37 1 7.7738 -3.1552 -0.4754 38 1 7.3549 -1.4358 -0.2849 39 1 5.4769 -4.3687 2.2004 40 1 6.6903 -4.8713 0.9994 41 1 7.1916 -3.9573 2.4423 42 1 5.1130 -2.1261 -0.8039 43 1 5.2480 -3.8931 -0.6373 44 1 4.1217 -2.9850 0.3995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414378212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = 108.612496 kcal Electronic energy + Delta-G solvation = -23013.071658 eV Core-core repulsion = 19968.288953 eV Total energy + Delta-G solvation = -3044.782705 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.24189 -40.64875 -35.51435 -35.28507 -34.45461 -33.60890 -30.63125 -29.35867 -28.39459 -27.82954 -27.16730 -25.93098 -24.54909 -23.32508 -21.86083 -19.86844 -18.63820 -18.25455 -17.30644 -16.86423 -16.56555 -16.32624 -16.01855 -15.55774 -15.42368 -14.87797 -14.44193 -14.23794 -13.98929 -13.91654 -13.66560 -13.22948 -13.14096 -12.97856 -12.82806 -12.70957 -12.63098 -12.32733 -12.23600 -12.07816 -11.86287 -11.74034 -11.52545 -11.22677 -11.12720 -10.95434 -10.76651 -10.52822 -10.36590 -10.13240 -8.56406 -8.13728 -6.17779 -0.01626 0.05077 1.41874 1.42584 1.49932 2.42595 2.61360 3.10418 3.20455 3.55573 3.67225 3.73199 3.84106 4.05478 4.11038 4.18295 4.20095 4.28656 4.50442 4.65714 4.70566 4.74347 4.81074 4.81811 4.87136 4.96905 4.98013 5.00727 5.10409 5.12181 5.18956 5.26924 5.33415 5.36752 5.45685 5.49039 5.55374 5.61153 5.66305 5.73858 5.88812 6.11380 6.42803 6.74050 6.97280 7.48270 7.88137 8.97324 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023417 B = 0.005204 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.426732 B = 5379.255852 C = 5852.966381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.050 3.950 3 C -0.111 4.111 4 C -0.109 4.109 5 C 0.066 3.934 6 C 0.071 3.929 7 N -0.534 5.534 8 C 0.166 3.834 9 C -0.515 4.515 10 H 0.061 0.939 11 C 0.012 3.988 12 N -0.928 5.928 13 Si 0.950 3.050 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.076 3.924 18 C -0.090 4.090 19 C -0.155 4.155 20 C -0.129 4.129 21 C -0.126 4.126 22 N -0.243 5.243 23 N -0.286 5.286 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.102 0.898 27 H 0.187 0.813 28 H 0.163 0.837 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.039 0.961 32 H -0.005 1.005 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.628 0.442 -6.485 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.079 4.079 6 C -0.057 4.057 7 N -0.257 5.257 8 C 0.041 3.959 9 C -0.553 4.553 10 H 0.079 0.921 11 C -0.186 4.186 12 N -0.568 5.568 13 Si 0.776 3.224 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.052 4.052 18 C -0.091 4.091 19 C -0.211 4.211 20 C -0.187 4.187 21 C -0.183 4.183 22 N -0.085 5.085 23 N -0.128 5.128 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.204 0.796 28 H 0.181 0.819 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.013 0.987 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.726 -0.791 -6.209 17.859 hybrid contribution 1.431 0.907 0.546 1.780 sum -15.294 0.116 -5.663 16.309 Atomic orbital electron populations 1.20757 0.85169 1.04813 1.04497 1.23466 1.00633 0.90492 0.94917 1.22678 0.93842 1.00983 0.96481 1.22563 0.96289 0.99184 0.95771 1.22868 0.98170 0.91588 0.95255 1.21648 0.87968 1.03423 0.92706 1.62222 1.15986 1.30464 1.17065 1.20464 0.82506 0.95322 0.97603 1.21520 0.94150 1.39077 1.00526 0.92093 1.25641 0.97176 0.95559 1.00254 1.70049 1.04758 1.45319 1.36724 0.85734 0.77066 0.78916 0.80707 1.19598 1.21067 1.19989 1.22203 0.98093 0.86805 0.98147 1.21086 0.95332 0.96140 0.96572 1.22715 0.97903 1.00283 1.00191 1.21751 1.00937 0.96286 0.99705 1.22583 0.97944 0.99818 0.97973 1.73616 0.99066 1.26141 1.09638 1.72935 1.02224 1.26799 1.10858 0.88653 0.90687 0.87946 0.79614 0.81946 0.89349 0.89834 0.94374 0.98731 0.93000 0.91485 0.93287 0.92706 0.93590 0.91403 0.92428 0.92210 0.94162 0.92027 0.94384 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 10.20 71.24 0.73 -0.54 16 2 C 0.05 1.13 6.87 42.63 0.29 1.42 16 3 C -0.11 -2.19 9.88 22.51 0.22 -1.97 16 4 C -0.11 -2.75 9.85 22.51 0.22 -2.53 16 5 C 0.07 2.11 5.66 42.63 0.24 2.35 16 6 C 0.07 2.52 4.14 85.56 0.35 2.88 16 7 N -0.53 -22.76 4.83 -905.38 -4.37 -27.13 16 8 C 0.17 8.35 4.18 85.56 0.36 8.70 16 9 C -0.51 -28.04 7.60 25.60 0.19 -27.85 16 10 H 0.06 3.33 5.51 -2.91 -0.02 3.31 16 11 C 0.01 0.67 5.46 84.65 0.46 1.13 16 12 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 13 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 17 C 0.08 3.12 4.57 86.31 0.39 3.51 16 18 C -0.09 -3.29 0.77 -52.18 -0.04 -3.33 16 19 C -0.15 -6.13 6.16 71.98 0.44 -5.68 16 20 C -0.13 -4.38 8.29 71.98 0.60 -3.78 16 21 C -0.13 -4.21 6.52 71.98 0.47 -3.74 16 22 N -0.24 -8.06 5.52 -47.62 -0.26 -8.32 16 23 N -0.29 -8.70 11.43 -47.62 -0.54 -9.24 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.10 0.83 8.09 -2.39 -0.02 0.81 16 27 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 28 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 29 H 0.09 3.16 2.40 -2.39 -0.01 3.16 16 30 H 0.08 2.81 7.95 -2.39 -0.02 2.79 16 31 H 0.04 1.97 3.41 -3.75 -0.01 1.96 16 32 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.07 3.09 4.87 -2.39 -0.01 3.08 16 35 H 0.05 2.01 6.59 -2.39 -0.02 2.00 16 36 H 0.05 2.58 5.83 -2.39 -0.01 2.57 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 2.72 3.22 -2.39 -0.01 2.71 16 39 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 41 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 42 H 0.06 2.09 3.81 -2.39 -0.01 2.08 16 43 H 0.04 1.16 8.06 -2.38 -0.02 1.14 16 44 H 0.07 2.62 5.85 -2.39 -0.01 2.60 16 Total: -1.00 -64.82 323.04 3.07 -61.75 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 1.00 Total: 20.17 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 4.94 Total: -29.43 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -4.89 Total: -98.58 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -64.82 3.07 -61.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414378212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.360 kcal (2) G-P(sol) polarization free energy of solvation -64.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds