Wall clock time and date at job start Mon Mar 30 2020 02:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.31793 * 119.12498 * 269.72967 * 3 2 1 5 5 C 1.32328 * 120.81515 * 179.76153 * 4 3 2 6 6 C 1.38596 * 119.10597 * 0.50375 * 5 4 3 7 7 C 1.50706 * 120.79786 * 179.73053 * 6 5 4 8 8 N 1.46895 * 109.47002 * 270.01830 * 7 6 5 9 9 C 1.46899 * 110.99972 * 180.02562 * 8 7 6 10 10 C 1.53009 * 109.47315 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46812 * 300.00069 * 10 9 8 12 12 C 1.53003 * 109.46798 * 60.00072 * 10 9 8 13 13 C 1.53001 * 109.47192 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.46849 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00192 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99856 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99845 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99937 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47385 * 90.00506 * 18 16 14 20 20 H 1.48503 * 109.46900 * 210.00194 * 18 16 14 21 21 H 1.48501 * 109.47280 * 329.99978 * 18 16 14 22 22 C 1.38592 * 118.39880 * 359.75054 * 6 5 4 23 23 N 1.31796 * 119.11883 * 90.00161 * 3 2 1 24 24 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 25 25 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 26 26 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 28 28 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 29 29 H 1.08005 * 120.44661 * 180.27513 * 5 4 3 30 30 H 1.09003 * 109.47481 * 30.02156 * 7 6 5 31 31 H 1.09005 * 109.46919 * 150.02496 * 7 6 5 32 32 H 1.00900 * 111.00175 * 56.05291 * 8 7 6 33 33 H 1.09000 * 109.47205 * 299.99763 * 9 8 7 34 34 H 1.08998 * 109.47599 * 60.00150 * 9 8 7 35 35 H 1.08996 * 109.47002 * 60.00144 * 11 10 9 36 36 H 1.08998 * 109.46780 * 179.97438 * 11 10 9 37 37 H 1.08994 * 109.47111 * 299.99838 * 11 10 9 38 38 H 1.08996 * 109.47095 * 60.00186 * 12 10 9 39 39 H 1.08998 * 109.46672 * 180.02562 * 12 10 9 40 40 H 1.08996 * 109.47001 * 299.99853 * 12 10 9 41 41 H 1.08993 * 109.47001 * 300.00287 * 13 10 9 42 42 H 1.09003 * 109.46824 * 60.00282 * 13 10 9 43 43 H 0.96994 * 119.99998 * 179.97438 * 17 16 14 44 44 H 1.08006 * 120.44459 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2513 2.0238 -1.1513 5 6 2.6879 3.2724 -1.1903 6 6 2.9245 3.9414 0.0002 7 6 3.4278 5.3620 0.0002 8 7 4.8967 5.3610 0.0003 9 6 5.4241 6.7320 0.0009 10 6 6.9536 6.6902 0.0003 11 6 7.4441 5.9545 1.2489 12 6 7.4432 5.9560 -1.2496 13 6 7.5029 8.1182 0.0003 14 6 9.0093 8.0770 0.0003 15 1 9.5235 7.1273 -0.0001 16 6 9.7311 9.2518 -0.0002 17 7 9.1049 10.4083 -0.0002 18 14 11.5983 9.2006 -0.0008 19 1 12.0927 9.1869 -1.4010 20 1 12.1265 10.3993 0.6988 21 1 12.0602 7.9752 0.6993 22 6 2.6875 3.2725 1.1906 23 7 2.2462 2.0255 1.1514 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 2.8611 3.7623 -2.1372 30 1 3.0648 5.8761 -0.8898 31 1 3.0648 5.8760 0.8903 32 1 5.2580 4.8347 -0.7811 33 1 5.0750 7.2560 -0.8889 34 1 5.0750 7.2553 0.8910 35 1 7.0528 4.9372 1.2484 36 1 8.5337 5.9244 1.2482 37 1 7.0953 6.4776 2.1393 38 1 7.0937 6.4802 -2.1391 39 1 8.5327 5.9259 -1.2498 40 1 7.0519 4.9387 -1.2501 41 1 7.1533 8.6419 -0.8894 42 1 7.1540 8.6416 0.8905 43 1 9.6126 11.2347 -0.0002 44 1 2.8610 3.7621 2.1375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414444488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:28 Heat of formation + Delta-G solvation = 2.459959 kcal Electronic energy + Delta-G solvation = -21013.104869 eV Core-core repulsion = 17963.719045 eV Total energy + Delta-G solvation = -3049.385824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.09434 -39.21952 -36.63709 -34.98832 -34.69093 -34.09238 -31.77979 -29.03041 -27.89272 -27.65356 -26.19028 -25.63285 -24.62254 -23.58963 -22.35246 -19.57680 -18.79092 -18.32006 -17.75205 -16.82654 -16.56149 -16.20249 -15.74485 -15.50695 -15.02859 -14.79236 -14.74965 -14.65638 -14.35617 -14.18755 -13.88721 -13.43707 -13.32801 -13.21718 -12.79634 -12.69826 -12.59339 -12.41692 -12.23793 -12.14335 -12.01458 -11.92211 -11.79602 -11.70230 -11.37176 -10.86479 -10.76638 -10.49529 -10.28734 -10.20699 -9.30565 -8.13590 -6.19907 -0.13158 0.11711 1.40815 1.41390 1.51785 2.43862 2.68973 2.97398 3.20484 3.21162 3.37739 3.69639 3.80963 3.91305 4.15672 4.20280 4.24895 4.28940 4.38470 4.39745 4.61511 4.67823 4.79574 4.81862 4.82355 4.95276 4.98092 5.00901 5.08292 5.15465 5.21949 5.22843 5.26783 5.47802 5.53332 5.55513 5.59921 5.65468 5.88276 5.94034 5.97146 6.06116 6.37973 6.45875 6.95369 7.10623 7.47190 8.98509 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.046627 B = 0.002751 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.362354 B =10177.485724 C =10296.715185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.056 4.056 3 C 0.300 3.700 4 N -0.534 5.534 5 C 0.149 3.851 6 C -0.184 4.184 7 C 0.110 3.890 8 N -0.681 5.681 9 C 0.083 3.917 10 C -0.055 4.055 11 C -0.107 4.107 12 C -0.123 4.123 13 C 0.039 3.961 14 C -0.513 4.513 15 H 0.064 0.936 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.161 3.839 23 N -0.536 5.536 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.185 0.815 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.343 0.657 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.064 0.936 41 H -0.014 1.014 42 H -0.014 1.014 43 H 0.259 0.741 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 -17.683 -0.978 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 C 0.032 3.968 4 N -0.248 5.248 5 C -0.017 4.017 6 C -0.189 4.189 7 C -0.020 4.020 8 N -0.313 5.313 9 C -0.046 4.046 10 C -0.055 4.055 11 C -0.164 4.164 12 C -0.180 4.180 13 C 0.002 3.998 14 C -0.551 4.551 15 H 0.082 0.918 16 C -0.201 4.201 17 N -0.578 5.578 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.004 4.004 23 N -0.250 5.250 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.202 0.798 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.162 0.838 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.005 0.995 42 H 0.005 0.995 43 H 0.068 0.932 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.478 -18.521 -0.292 24.792 hybrid contribution 1.290 2.012 -0.865 2.542 sum -15.188 -16.509 -1.157 22.462 Atomic orbital electron populations 1.21640 0.92722 1.03568 1.01524 1.20455 0.97406 0.86872 1.04757 1.23752 0.91192 0.98289 0.83527 1.68310 1.14709 1.11002 1.30756 1.23559 0.89533 0.89334 0.99282 1.21586 1.02605 0.99269 0.95410 1.20717 0.87900 0.90429 1.02939 1.60544 1.06186 1.14157 1.50454 1.21833 0.94221 0.88754 0.99779 1.20490 0.93193 0.95833 0.95993 1.21499 0.99569 0.99346 0.96019 1.21689 1.01058 0.98905 0.96374 1.19013 0.94855 0.91776 0.94193 1.21618 0.92905 0.92208 1.48380 0.91818 1.25895 1.03084 0.95492 0.95649 1.70097 1.37047 0.97832 1.52814 0.85609 0.80544 0.77657 0.78230 1.20122 1.21298 1.18890 1.23500 0.88473 0.89019 0.99456 1.68332 1.14730 1.11090 1.30799 0.93159 0.93134 0.89360 0.88584 0.88657 0.79761 0.92709 0.89027 0.83791 0.95666 0.91806 0.91714 0.94602 0.94832 0.94147 0.93701 0.91747 0.99518 0.99522 0.93196 0.80004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.89 71.98 0.71 -1.07 16 2 C -0.06 -0.88 6.37 29.85 0.19 -0.69 16 3 C 0.30 6.55 6.90 138.75 0.96 7.51 16 4 N -0.53 -11.92 10.33 -187.84 -1.94 -13.86 16 5 C 0.15 2.87 11.01 84.70 0.93 3.81 16 6 C -0.18 -3.53 5.43 -19.69 -0.11 -3.64 16 7 C 0.11 2.06 5.86 85.56 0.50 2.57 16 8 N -0.68 -16.32 5.70 -517.91 -2.95 -19.28 16 9 C 0.08 2.55 4.65 86.31 0.40 2.95 16 10 C -0.05 -2.07 0.60 -52.18 -0.03 -2.10 16 11 C -0.11 -3.94 8.06 71.98 0.58 -3.36 16 12 C -0.12 -4.26 7.89 71.98 0.57 -3.69 16 13 C 0.04 1.97 4.04 29.85 0.12 2.09 16 14 C -0.51 -28.00 7.65 25.60 0.20 -27.80 16 15 H 0.06 3.36 5.68 -2.91 -0.02 3.34 16 16 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 17 N -0.94 -56.64 13.29 21.45 0.28 -56.36 16 18 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.16 3.32 11.01 84.70 0.93 4.25 16 23 N -0.54 -12.33 10.33 -187.84 -1.94 -14.27 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 30 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.09 1.64 8.10 -2.38 -0.02 1.62 16 32 H 0.34 7.92 6.76 -89.69 -0.61 7.31 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.08 7.60 -2.39 -0.02 2.06 16 36 H 0.03 1.43 6.62 -2.39 -0.02 1.42 16 37 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.04 1.73 6.62 -2.39 -0.02 1.71 16 40 H 0.06 1.81 6.57 -2.39 -0.02 1.80 16 41 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 42 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -65.39 355.38 2.25 -63.14 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.36 Total: 13.33 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 6.42 Total: -18.97 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -6.55 Total: -103.76 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -65.39 2.25 -63.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414444488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.597 kcal (2) G-P(sol) polarization free energy of solvation -65.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds