Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.46978 * 2 1 4 4 C 1.46896 * 111.00419 * 70.07409 * 3 2 1 5 5 C 1.50695 * 109.47400 * 70.57533 * 4 3 2 6 6 H 1.08003 * 120.00138 * 4.84323 * 5 4 3 7 7 C 1.37880 * 120.00019 * 184.84844 * 5 4 3 8 8 N 1.31518 * 120.00049 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00056 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47315 * 89.99992 * 9 7 5 11 11 H 1.48498 * 109.47132 * 209.99877 * 9 7 5 12 12 H 1.48501 * 109.47048 * 329.99968 * 9 7 5 13 13 C 1.46900 * 110.99832 * 306.11663 * 3 2 1 14 14 C 1.53008 * 109.47219 * 287.46901 * 13 3 2 15 15 H 1.08999 * 109.46971 * 306.72284 * 14 13 3 16 16 O 1.42895 * 109.46695 * 66.71831 * 14 13 3 17 17 C 1.52997 * 109.47132 * 186.71719 * 14 13 3 18 18 H 1.09007 * 109.46916 * 60.00266 * 17 14 13 19 19 C 1.52998 * 109.47479 * 300.00089 * 17 14 13 20 20 C 1.50695 * 109.47234 * 179.97438 * 17 14 13 21 21 C 1.38236 * 119.99663 * 59.72920 * 20 17 14 22 22 C 1.38237 * 119.99843 * 179.78861 * 21 20 17 23 23 C 1.38230 * 120.00350 * 0.43938 * 22 21 20 24 24 C 1.38240 * 119.99471 * 359.81613 * 23 22 21 25 25 C 1.38227 * 120.00198 * 359.97370 * 24 23 22 26 26 H 1.09000 * 109.46711 * 184.61879 * 1 2 3 27 27 H 1.09000 * 109.47435 * 304.61549 * 1 2 3 28 28 H 1.09003 * 109.47432 * 64.61556 * 1 2 3 29 29 H 1.08995 * 109.47109 * 239.99638 * 2 1 3 30 30 H 1.08998 * 109.47360 * 119.99713 * 2 1 3 31 31 H 1.08999 * 109.47177 * 190.57712 * 4 3 2 32 32 H 1.09004 * 109.46577 * 310.57126 * 4 3 2 33 33 H 0.96990 * 119.99988 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47580 * 47.47159 * 13 3 2 35 35 H 1.09001 * 109.46998 * 167.47421 * 13 3 2 36 36 H 0.96704 * 114.00209 * 60.00599 * 16 14 13 37 37 H 1.09001 * 109.47364 * 179.97438 * 19 17 14 38 38 H 1.08994 * 109.47161 * 300.00659 * 19 17 14 39 39 H 1.09005 * 109.47114 * 59.99841 * 19 17 14 40 40 H 1.07997 * 120.00244 * 359.97438 * 21 20 17 41 41 H 1.08005 * 119.99638 * 180.27285 * 22 21 20 42 42 H 1.08001 * 120.00558 * 179.83409 * 23 22 21 43 43 H 1.08004 * 119.99718 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00131 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7545 2.0372 1.2893 5 6 2.6500 1.4437 2.3460 6 1 3.4002 0.7167 2.0721 7 6 2.5115 1.8289 3.6627 8 7 3.2927 1.3106 4.5851 9 14 1.2144 3.0868 4.1364 10 1 -0.0544 2.3893 4.4662 11 1 1.6787 3.8551 5.3193 12 1 0.9877 4.0159 3.0004 13 6 1.4329 2.1507 -1.1079 14 6 2.0562 1.6954 -2.4290 15 1 3.1423 1.7526 -2.3570 16 8 1.6672 0.3473 -2.6995 17 6 1.5715 2.6031 -3.5612 18 1 1.8683 3.6315 -3.3548 19 6 0.0470 2.5228 -3.6622 20 6 2.1859 2.1551 -4.8622 21 6 1.9544 0.8756 -5.3314 22 6 2.5144 0.4660 -6.5271 23 6 3.3133 1.3328 -7.2490 24 6 3.5490 2.6106 -6.7771 25 6 2.9855 3.0216 -5.5837 26 1 -0.3633 -1.0244 0.0828 27 1 -0.3634 0.5838 0.8457 28 1 -0.3634 0.4406 -0.9285 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9524 3.1056 1.2034 32 1 0.7120 1.8820 1.5673 33 1 3.1951 1.5812 5.5113 34 1 0.3565 1.9815 -1.1367 35 1 1.6300 3.2125 -0.9601 36 1 0.7114 0.2217 -2.7767 37 1 -0.2984 3.1698 -4.4685 38 1 -0.2498 1.4945 -3.8685 39 1 -0.3971 2.8472 -2.7210 40 1 1.3337 0.1969 -4.7654 41 1 2.3300 -0.5323 -6.8958 42 1 3.7530 1.0120 -8.1818 43 1 4.1728 3.2881 -7.3414 44 1 3.1694 4.0201 -5.2153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450462990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = -23.623219 kcal Electronic energy + Delta-G solvation = -22151.387345 eV Core-core repulsion = 19068.577718 eV Total energy + Delta-G solvation = -3082.809627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97904 -38.30815 -36.10962 -33.66181 -32.48146 -30.89292 -30.30894 -29.54886 -28.45414 -26.13554 -24.47615 -22.90540 -22.58237 -21.70692 -19.99779 -19.28654 -16.95514 -16.70572 -16.37420 -15.91950 -15.29650 -15.19734 -14.69250 -14.24468 -14.07047 -13.96575 -13.69925 -13.36284 -12.94481 -12.66419 -12.52342 -12.36030 -12.13884 -11.86289 -11.62168 -11.54398 -11.29131 -11.20415 -11.04472 -10.77617 -10.72852 -10.60477 -10.49544 -10.13808 -9.82002 -9.35039 -9.15918 -8.89906 -8.64177 -8.54707 -7.23743 -6.02536 -3.98729 1.33905 1.41087 3.27438 3.35567 3.36932 3.76579 4.38524 4.43131 4.68574 4.69554 4.80844 4.95969 5.03091 5.16824 5.17870 5.28638 5.32357 5.43301 5.49593 5.55909 5.61077 5.71033 5.78666 5.85403 5.90395 5.95870 6.02505 6.04850 6.09122 6.10295 6.36611 6.45101 6.47242 6.50896 6.55455 6.66556 6.91484 6.99260 7.00293 7.12704 7.66742 7.78119 7.97938 8.14467 8.71133 9.08923 9.59893 11.10967 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030179 B = 0.003845 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.575140 B = 7280.539520 C = 7384.834584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 N -0.518 5.518 4 C 0.159 3.841 5 C -0.504 4.504 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.015 3.985 14 C 0.124 3.876 15 H 0.106 0.894 16 O -0.547 6.547 17 C -0.087 4.087 18 H 0.086 0.914 19 C -0.149 4.149 20 C -0.070 4.070 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.119 4.119 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.022 0.978 32 H -0.012 1.012 33 H 0.263 0.737 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.362 0.638 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.132 0.868 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 1.727 -21.923 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.080 4.080 3 N -0.241 5.241 4 C 0.032 3.968 5 C -0.542 4.542 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.114 4.114 14 C 0.065 3.935 15 H 0.124 0.876 16 O -0.352 6.352 17 C -0.106 4.106 18 H 0.104 0.896 19 C -0.206 4.206 20 C -0.070 4.070 21 C -0.115 4.115 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.137 4.137 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.040 0.960 32 H 0.005 0.995 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.209 0.791 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.149 0.851 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.871 1.640 -21.752 22.351 hybrid contribution -2.100 0.963 0.569 2.379 sum -6.971 2.603 -21.183 22.452 Atomic orbital electron populations 1.22400 1.00248 1.01195 1.00590 1.22292 0.91201 0.91050 1.03459 1.62111 1.57062 1.01835 1.03092 1.20234 0.94836 0.94574 0.87124 1.21045 1.18043 1.25032 0.90087 0.90142 1.24910 0.95898 0.96155 0.96483 1.69896 1.39039 1.43802 1.01333 0.86879 0.82316 0.82306 0.78291 1.20455 1.21210 1.19387 1.22901 0.96941 0.98764 0.92782 1.21974 1.00474 0.80700 0.90361 0.87592 1.86652 1.27339 1.27787 1.93441 1.20881 0.95818 1.00916 0.92982 0.89606 1.21894 0.94440 1.02004 1.02291 1.19751 0.97469 0.94222 0.95547 1.21257 0.99650 0.95512 0.95053 1.21169 0.98199 0.99470 0.95515 1.21105 0.99267 0.94275 0.99997 1.21067 1.00334 0.96382 0.96590 1.21084 0.97864 0.99524 0.95256 0.93048 0.92736 0.93871 0.89639 0.90212 0.96047 0.99460 0.92746 0.94433 0.91078 0.79075 0.92359 0.92481 0.91738 0.85073 0.86432 0.86613 0.86480 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 9.11 37.16 0.34 -2.65 16 2 C 0.05 0.90 5.43 -3.83 -0.02 0.88 16 3 N -0.52 -10.55 4.62 -236.08 -1.09 -11.64 16 4 C 0.16 3.81 3.69 -4.98 -0.02 3.79 16 5 C -0.50 -14.38 8.90 -34.44 -0.31 -14.69 16 6 H 0.08 2.53 7.89 -52.48 -0.41 2.12 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 9 Si 0.87 21.60 27.38 -169.99 -4.65 16.95 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.38 6.68 56.52 0.38 -6.00 16 13 C 0.02 0.24 3.98 -3.82 -0.02 0.22 16 14 C 0.12 1.67 2.94 -26.73 -0.08 1.59 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 16 O -0.55 -7.08 7.67 -35.23 -0.27 -7.35 16 17 C -0.09 -0.94 2.53 -91.78 -0.23 -1.18 16 18 H 0.09 0.91 7.88 -51.93 -0.41 0.50 16 19 C -0.15 -1.40 8.35 37.16 0.31 -1.09 16 20 C -0.07 -0.79 4.78 -104.63 -0.50 -1.29 16 21 C -0.10 -1.09 8.31 -39.58 -0.33 -1.42 16 22 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 23 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 24 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 25 C -0.12 -1.30 9.67 -39.59 -0.38 -1.68 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.99 6.35 -51.93 -0.33 0.66 16 28 H 0.04 0.58 5.39 -51.93 -0.28 0.30 16 29 H 0.09 1.50 5.75 -51.93 -0.30 1.20 16 30 H 0.08 1.76 7.09 -51.93 -0.37 1.39 16 31 H 0.02 0.53 7.14 -51.93 -0.37 0.15 16 32 H -0.01 -0.29 5.37 -51.93 -0.28 -0.57 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.04 0.55 4.30 -51.93 -0.22 0.33 16 35 H 0.07 1.13 7.73 -51.93 -0.40 0.73 16 36 H 0.36 3.77 6.06 45.56 0.28 4.05 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.49 6.04 -51.93 -0.31 0.17 16 39 H 0.06 0.62 6.59 -51.93 -0.34 0.27 16 40 H 0.13 1.38 5.50 -52.49 -0.29 1.09 16 41 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 44 H 0.12 1.12 7.95 -52.49 -0.42 0.70 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -31.28 331.77 -8.92 -40.21 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.16 Total: 4.63 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -2.52 Total: -20.73 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.32 Total: -38.70 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.27 Total: -7.35 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.65 Total: 16.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.28 -8.92 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450462990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.582 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds