Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47440 * 2 1 4 4 C 1.46904 * 110.99866 * 287.99588 * 3 2 1 5 5 C 1.50693 * 109.47420 * 160.36094 * 4 3 2 6 6 H 1.08001 * 119.99996 * 4.65694 * 5 4 3 7 7 C 1.37880 * 120.00366 * 184.66087 * 5 4 3 8 8 N 1.31511 * 119.99810 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00217 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47147 * 59.99815 * 9 7 5 11 11 H 1.48500 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47357 * 300.00158 * 9 7 5 13 13 C 1.46898 * 111.00334 * 164.04732 * 3 2 1 14 14 C 1.53005 * 109.46926 * 293.94939 * 13 3 2 15 15 H 1.09005 * 109.47201 * 59.99590 * 14 13 3 16 16 O 1.42899 * 109.47219 * 300.00355 * 14 13 3 17 17 C 1.52992 * 109.47333 * 179.97438 * 14 13 3 18 18 H 1.09002 * 109.47431 * 305.00243 * 17 14 13 19 19 C 1.53005 * 109.47065 * 65.00103 * 17 14 13 20 20 C 1.50706 * 109.47068 * 185.00059 * 17 14 13 21 21 C 1.38238 * 119.99900 * 299.72345 * 20 17 14 22 22 C 1.38232 * 119.99599 * 179.78404 * 21 20 17 23 23 C 1.38235 * 120.00376 * 0.45016 * 22 21 20 24 24 C 1.38234 * 119.99619 * 359.81092 * 23 22 21 25 25 C 1.38232 * 120.00382 * 359.97226 * 24 23 22 26 26 H 1.08997 * 109.47029 * 299.46878 * 1 2 3 27 27 H 1.09002 * 109.46701 * 59.46817 * 1 2 3 28 28 H 1.08995 * 109.47238 * 179.46285 * 1 2 3 29 29 H 1.09000 * 109.47265 * 239.99269 * 2 1 3 30 30 H 1.09001 * 109.47278 * 119.99891 * 2 1 3 31 31 H 1.09007 * 109.47053 * 280.36350 * 4 3 2 32 32 H 1.08997 * 109.47077 * 40.35474 * 4 3 2 33 33 H 0.97000 * 120.00188 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47345 * 173.95426 * 13 3 2 35 35 H 1.08995 * 109.47604 * 53.94463 * 13 3 2 36 36 H 0.96705 * 113.99816 * 299.99813 * 16 14 13 37 37 H 1.09003 * 109.47003 * 179.97438 * 19 17 14 38 38 H 1.08994 * 109.47025 * 299.99834 * 19 17 14 39 39 H 1.09000 * 109.46993 * 60.00344 * 19 17 14 40 40 H 1.07999 * 120.00136 * 0.02562 * 21 20 17 41 41 H 1.08001 * 119.99970 * 180.27810 * 22 21 20 42 42 H 1.07997 * 120.00031 * 179.82545 * 23 22 21 43 43 H 1.08004 * 120.00126 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00465 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7958 2.0225 -1.3044 5 6 1.8471 3.5203 -1.1469 6 1 2.1023 3.9544 -0.1914 7 6 1.5684 4.3366 -2.2225 8 7 1.2581 3.8081 -3.3861 9 14 1.6314 6.1933 -2.0271 10 1 2.9975 6.6012 -1.6117 11 1 1.2945 6.8390 -3.3212 12 1 0.6528 6.6157 -0.9930 13 6 3.4384 1.4417 0.3769 14 6 3.5973 0.9996 1.8330 15 1 3.2322 -0.0214 1.9447 16 8 2.8441 1.8698 2.6800 17 6 5.0748 1.0581 2.2255 18 1 5.6609 0.4638 1.5244 19 6 5.5552 2.5103 2.1888 20 6 5.2471 0.5071 3.6176 21 6 4.5996 1.1050 4.6826 22 6 4.7540 0.5968 5.9588 23 6 5.5633 -0.5036 6.1715 24 6 6.2150 -1.0981 5.1072 25 6 6.0570 -0.5928 3.8303 26 1 -0.3633 0.5055 0.8947 27 1 -0.3633 0.5221 -0.8852 28 1 -0.3633 -1.0276 -0.0096 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.5700 1.7037 -2.0023 32 1 0.8182 1.7308 -1.6883 33 1 1.0623 4.3823 -4.1429 34 1 3.8034 2.4627 0.2654 35 1 4.0129 0.7779 -0.2690 36 1 3.1152 2.7969 2.6321 37 1 6.6078 2.5520 2.4688 38 1 5.4306 2.9088 1.1820 39 1 4.9692 3.1046 2.8899 40 1 3.9700 1.9667 4.5170 41 1 4.2446 1.0611 6.7903 42 1 5.6861 -0.8988 7.1690 43 1 6.8469 -1.9581 5.2732 44 1 6.5659 -1.0575 2.9988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450462991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = -32.338169 kcal Electronic energy + Delta-G solvation = -22057.671800 eV Core-core repulsion = 18974.484265 eV Total energy + Delta-G solvation = -3083.187535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78850 -37.94917 -35.95940 -33.39523 -32.59634 -30.84616 -30.47717 -29.40031 -28.07619 -25.91431 -24.14866 -22.59852 -22.53592 -21.81682 -19.92099 -19.56509 -16.92262 -16.41526 -16.19459 -15.62931 -15.13114 -14.82147 -14.67666 -14.30760 -14.11204 -13.70481 -13.47002 -13.24974 -13.05644 -12.69172 -12.26405 -12.07345 -11.98190 -11.57546 -11.39627 -11.35527 -11.22704 -11.07251 -10.84387 -10.81672 -10.78531 -10.64778 -10.32512 -10.11214 -9.75413 -9.31056 -9.16033 -8.86278 -8.58939 -8.38412 -7.15288 -6.00094 -4.01047 1.38913 1.45691 3.33451 3.38197 3.40745 3.82061 4.41960 4.53854 4.78609 4.87493 4.98968 5.00778 5.11296 5.25236 5.26136 5.35875 5.46958 5.49741 5.62967 5.67039 5.71213 5.80927 5.92853 5.98224 6.00832 6.11746 6.13630 6.14802 6.24693 6.36356 6.38310 6.49234 6.56754 6.62459 6.65993 6.75230 6.90147 7.05766 7.27540 7.36976 7.83935 8.06768 8.18717 8.28037 8.59266 9.06092 9.62656 11.10514 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.004326 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.147125 B = 6471.237716 C = 7107.599486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 N -0.523 5.523 4 C 0.190 3.810 5 C -0.501 4.501 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.032 3.968 14 C 0.121 3.879 15 H 0.091 0.909 16 O -0.542 6.542 17 C -0.087 4.087 18 H 0.082 0.918 19 C -0.151 4.151 20 C -0.069 4.069 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.122 4.122 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.017 0.983 30 H 0.057 0.943 31 H -0.015 1.015 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.086 0.914 35 H 0.023 0.977 36 H 0.369 0.631 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.134 0.866 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.040 -7.836 14.560 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 N -0.248 5.248 4 C 0.065 3.935 5 C -0.540 4.540 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.097 4.097 14 C 0.062 3.938 15 H 0.108 0.892 16 O -0.347 6.347 17 C -0.107 4.107 18 H 0.100 0.900 19 C -0.208 4.208 20 C -0.069 4.069 21 C -0.115 4.115 22 C -0.143 4.143 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.140 4.140 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.003 0.997 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.216 0.784 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.152 0.848 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.407 -8.076 14.856 18.884 hybrid contribution 0.828 0.915 -0.870 1.510 sum 9.235 -7.161 13.986 18.225 Atomic orbital electron populations 1.21717 0.95539 0.99748 1.02917 1.22016 0.96147 0.91074 0.98584 1.62074 1.14812 1.14036 1.33830 1.19793 0.96361 0.94262 0.83067 1.21114 1.46056 0.90669 0.96143 0.92038 1.24986 0.95586 0.98845 0.95258 1.69946 1.47774 1.35286 1.01041 0.86591 0.78442 0.85358 0.77169 1.20382 1.21456 1.20169 1.22715 0.90923 1.02004 0.94096 1.21928 0.87781 0.94578 0.89558 0.89161 1.86551 1.61940 1.21174 1.65078 1.20894 0.98685 0.97681 0.93396 0.89983 1.21902 1.01125 0.94844 1.02907 1.19823 0.96533 0.95389 0.95116 1.21299 0.98016 1.00470 0.91737 1.21179 0.98977 0.96880 0.97252 1.21094 0.98200 0.96852 0.98666 1.21051 1.00361 1.00077 0.92964 1.21079 0.99230 0.96692 0.96991 0.92256 0.92160 0.93879 0.96452 0.92452 0.99705 0.94576 0.92947 0.89530 0.95856 0.78352 0.92539 0.91149 0.92129 0.84811 0.86405 0.86654 0.86558 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.99 37.16 0.37 -2.17 16 2 C 0.05 0.94 5.55 -3.83 -0.02 0.92 16 3 N -0.52 -11.11 4.25 -236.07 -1.00 -12.11 16 4 C 0.19 4.91 4.59 -4.98 -0.02 4.89 16 5 C -0.50 -13.84 8.61 -34.44 -0.30 -14.14 16 6 H 0.06 1.66 7.66 -52.49 -0.40 1.26 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.03 0.57 4.20 -3.82 -0.02 0.55 16 14 C 0.12 1.81 2.59 -26.73 -0.07 1.74 16 15 H 0.09 1.42 6.28 -51.93 -0.33 1.09 16 16 O -0.54 -8.50 10.56 -35.23 -0.37 -8.87 16 17 C -0.09 -1.09 2.47 -91.77 -0.23 -1.31 16 18 H 0.08 0.97 7.88 -51.93 -0.41 0.57 16 19 C -0.15 -1.76 8.34 37.16 0.31 -1.45 16 20 C -0.07 -0.85 4.78 -104.62 -0.50 -1.35 16 21 C -0.10 -1.21 8.43 -39.58 -0.33 -1.54 16 22 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 23 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 24 C -0.13 -1.34 10.05 -39.59 -0.40 -1.73 16 25 C -0.12 -1.40 9.67 -39.58 -0.38 -1.78 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 30 H 0.06 0.97 5.94 -51.93 -0.31 0.66 16 31 H -0.01 -0.41 8.00 -51.92 -0.42 -0.83 16 32 H 0.04 1.01 6.24 -51.93 -0.32 0.68 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.09 1.66 5.74 -51.93 -0.30 1.36 16 35 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.37 5.13 7.14 45.56 0.33 5.45 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.89 6.57 -51.93 -0.34 0.55 16 39 H 0.06 0.67 5.95 -51.93 -0.31 0.36 16 40 H 0.13 1.64 5.74 -52.49 -0.30 1.34 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.12 1.16 7.95 -52.49 -0.42 0.75 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -30.37 344.45 -9.32 -39.69 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.38 Total: 5.13 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -2.48 Total: -19.51 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.27 Total: -38.05 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.37 Total: -8.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.37 -9.32 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450462991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.352 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds