Wall clock time and date at job start Mon Mar 30 2020 01:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 C 1.50700 * 109.46498 * 240.00020 * 2 1 3 5 5 H 1.07999 * 120.00312 * 274.87888 * 4 2 1 6 6 C 1.37881 * 119.99698 * 94.88531 * 4 2 1 7 7 N 1.31516 * 119.99730 * 183.87350 * 6 4 2 8 8 Si 1.86799 * 120.00142 * 3.87736 * 6 4 2 9 9 H 1.48498 * 109.47027 * 84.42573 * 8 6 4 10 10 H 1.48495 * 109.47241 * 204.42535 * 8 6 4 11 11 H 1.48498 * 109.46914 * 324.42622 * 8 6 4 12 12 N 1.46900 * 109.46933 * 120.00334 * 2 1 3 13 13 C 1.46901 * 110.99856 * 176.04052 * 12 2 1 14 14 C 1.46897 * 111.00316 * 299.99755 * 12 2 1 15 15 C 1.52998 * 109.47488 * 170.00267 * 14 12 2 16 16 H 1.09000 * 109.46978 * 59.99531 * 15 14 12 17 17 O 1.42905 * 109.46912 * 300.00051 * 15 14 12 18 18 C 1.52998 * 109.47295 * 179.97438 * 15 14 12 19 19 H 1.09000 * 109.46889 * 60.00345 * 18 15 14 20 20 C 1.52997 * 109.47135 * 299.99889 * 18 15 14 21 21 C 1.50698 * 109.47250 * 179.97438 * 18 15 14 22 22 C 1.38240 * 119.99616 * 59.72728 * 21 18 15 23 23 C 1.38236 * 119.99746 * 180.34853 * 22 21 18 24 24 C 1.38236 * 120.00263 * 359.88239 * 23 22 21 25 25 C 1.38236 * 119.99803 * 0.09338 * 24 23 22 26 26 C 1.38226 * 120.00239 * 240.00312 * 21 18 15 27 27 H 1.09003 * 109.46704 * 306.76691 * 1 2 3 28 28 H 1.08993 * 109.46948 * 66.76311 * 1 2 3 29 29 H 1.08996 * 109.47184 * 186.76567 * 1 2 3 30 30 H 0.96998 * 119.99632 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.47328 * 183.95174 * 13 12 2 32 32 H 1.09001 * 109.46981 * 303.95642 * 13 12 2 33 33 H 1.09005 * 109.47002 * 63.95356 * 13 12 2 34 34 H 1.08993 * 109.47160 * 49.99754 * 14 12 2 35 35 H 1.09005 * 109.46895 * 290.00557 * 14 12 2 36 36 H 0.96698 * 113.99887 * 299.99510 * 17 15 14 37 37 H 1.09004 * 109.47163 * 60.00396 * 20 18 15 38 38 H 1.09005 * 109.46934 * 179.97438 * 20 18 15 39 39 H 1.09000 * 109.47604 * 300.00018 * 20 18 15 40 40 H 1.08001 * 120.00115 * 0.27197 * 22 21 18 41 41 H 1.07998 * 119.99734 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.99942 * 180.11547 * 24 23 22 43 43 H 1.07993 * 120.00036 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00086 * 359.70029 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1372 -1.7853 -1.2285 6 6 2.3578 0.0119 -2.3589 7 7 2.7232 -0.6130 -3.4570 8 14 2.2802 1.8780 -2.3280 9 1 3.5487 2.4172 -1.7754 10 1 2.0854 2.3883 -3.7089 11 1 1.1446 2.3121 -1.4752 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7947 1.1869 14 6 1.5487 -0.0265 2.4211 15 6 1.8628 -0.9045 3.6341 16 1 2.9392 -1.0634 3.6987 17 8 1.2030 -2.1643 3.4938 18 6 1.3728 -0.2105 4.9066 19 1 0.2964 -0.0514 4.8421 20 6 2.0797 1.1381 5.0564 21 6 1.6815 -1.0755 6.1013 22 6 2.9898 -1.4199 6.3856 23 6 3.2724 -2.2193 7.4774 24 6 2.2470 -2.6725 8.2862 25 6 0.9388 -2.3277 8.0021 26 6 0.6561 -1.5294 6.9095 27 1 -0.3633 0.6152 0.8233 28 1 -0.3633 0.4054 -0.9442 29 1 -0.3633 -1.0205 0.1211 30 1 2.9518 -0.1048 -4.2509 31 1 3.8164 -1.3723 2.0498 32 1 3.8069 -1.2917 0.2717 33 1 3.9193 0.2042 1.2299 34 1 0.4724 0.1323 2.3564 35 1 2.0520 0.9344 2.5280 36 1 0.2403 -2.0992 3.4303 37 1 1.8559 1.7636 4.1923 38 1 1.7303 1.6327 5.9628 39 1 3.1561 0.9790 5.1208 40 1 3.7910 -1.0653 5.7541 41 1 4.2945 -2.4880 7.6998 42 1 2.4680 -3.2955 9.1402 43 1 0.1378 -2.6814 8.6341 44 1 -0.3659 -1.2601 6.6875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450483966.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:22 Heat of formation + Delta-G solvation = -48.073599 kcal Electronic energy + Delta-G solvation = -22082.844622 eV Core-core repulsion = 18998.974747 eV Total energy + Delta-G solvation = -3083.869875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72349 -39.28584 -37.49066 -34.89254 -34.56453 -32.07885 -31.71871 -30.70698 -28.95321 -27.10510 -26.07041 -24.86167 -23.56544 -22.67210 -21.04446 -20.97862 -19.13144 -17.87421 -17.33835 -16.88783 -16.63163 -16.01745 -15.88929 -15.52485 -15.37214 -15.01594 -14.58532 -14.48247 -14.16517 -14.12132 -14.08310 -13.62282 -13.29117 -13.05972 -12.90342 -12.88593 -12.63276 -12.42641 -12.35271 -12.21367 -11.94077 -11.81440 -11.79422 -11.74654 -11.33021 -11.11258 -10.76930 -10.61579 -9.73881 -9.48661 -8.86015 -8.28047 -6.30499 0.54049 0.58016 1.30578 1.32246 1.42873 2.32289 2.90136 3.02986 3.27739 3.64274 3.71811 3.94975 4.12886 4.19804 4.22334 4.31062 4.35099 4.39053 4.51613 4.53790 4.59471 4.67583 4.72878 4.75730 4.81963 4.84343 4.94630 4.95966 5.00093 5.10219 5.19268 5.22387 5.24907 5.28808 5.36760 5.50244 5.65330 5.69269 5.70892 5.80916 6.12160 6.20593 6.41073 6.73162 6.80140 7.02671 7.35254 8.89260 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034730 B = 0.003843 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.023482 B = 7284.180697 C = 7353.064709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.180 3.820 3 H -0.004 1.004 4 C -0.497 4.497 5 H 0.031 0.969 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.937 3.063 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.245 1.245 12 N -0.533 5.533 13 C 0.045 3.955 14 C 0.015 3.985 15 C 0.132 3.868 16 H 0.082 0.918 17 O -0.561 6.561 18 C -0.076 4.076 19 H 0.093 0.907 20 C -0.143 4.143 21 C -0.069 4.069 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.127 4.127 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.265 0.735 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.012 0.988 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.379 0.621 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.117 0.883 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 3.129 24.546 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.073 3.927 3 H 0.013 0.987 4 C -0.536 4.536 5 H 0.049 0.951 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.761 3.239 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.168 1.168 12 N -0.257 5.257 13 C -0.104 4.104 14 C -0.113 4.113 15 C 0.072 3.928 16 H 0.099 0.901 17 O -0.366 6.366 18 C -0.096 4.096 19 H 0.111 0.889 20 C -0.200 4.200 21 C -0.069 4.069 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.144 4.144 26 C -0.145 4.145 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.227 0.773 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.135 0.865 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.176 2.459 24.379 24.708 hybrid contribution 0.195 1.490 -0.860 1.731 sum -2.981 3.949 23.520 24.034 Atomic orbital electron populations 1.21863 0.96025 1.00899 0.99710 1.19631 0.93596 0.91201 0.88319 0.98666 1.21061 1.42358 0.93945 0.96236 0.95058 1.25837 0.94593 1.03136 0.94906 1.70051 1.48190 1.37760 1.02913 0.85893 0.79830 0.80579 0.77566 1.19721 1.21236 1.16828 1.61917 1.09861 1.52373 1.01584 1.22096 0.88320 0.98637 1.01329 1.23068 1.01663 0.95818 0.90740 1.21832 0.96872 0.83352 0.90746 0.90050 1.86585 1.24412 1.29585 1.96034 1.20841 1.01988 0.94764 0.91966 0.88856 1.21851 1.00500 0.95128 1.02568 1.19781 0.93558 0.97748 0.95839 1.21140 0.96554 0.99200 0.97973 1.21379 1.00232 0.97901 0.95311 1.21421 0.93038 1.00613 1.00393 1.21426 0.97315 0.98055 0.97648 1.21288 0.99242 0.98469 0.95504 0.92455 0.94278 0.93094 0.92590 0.91418 0.93441 0.96992 0.89590 0.94170 0.77347 0.91716 0.91374 0.92559 0.86526 0.84959 0.84406 0.84252 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.76 71.98 0.63 -4.48 16 2 C 0.18 8.28 1.70 44.17 0.08 8.36 16 3 H 0.00 -0.19 5.36 -2.39 -0.01 -0.21 16 4 C -0.50 -28.38 7.39 25.60 0.19 -28.19 16 5 H 0.03 2.05 8.05 -2.91 -0.02 2.02 16 6 C 0.01 0.72 5.47 84.66 0.46 1.19 16 7 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 8 Si 0.94 43.95 26.95 68.60 1.85 45.80 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.24 -10.52 6.88 99.48 0.68 -9.83 16 12 N -0.53 -21.60 4.49 -901.47 -4.05 -25.65 16 13 C 0.04 1.81 9.06 127.69 1.16 2.97 16 14 C 0.02 0.46 4.08 86.30 0.35 0.81 16 15 C 0.13 3.45 2.23 30.59 0.07 3.52 16 16 H 0.08 2.34 5.79 -2.39 -0.01 2.33 16 17 O -0.56 -16.56 12.83 -148.98 -1.91 -18.47 16 18 C -0.08 -1.53 2.34 -11.54 -0.03 -1.56 16 19 H 0.09 1.61 7.88 -2.39 -0.02 1.60 16 20 C -0.14 -2.61 8.66 71.98 0.62 -1.99 16 21 C -0.07 -1.46 4.43 -19.87 -0.09 -1.55 16 22 C -0.13 -2.87 8.71 22.27 0.19 -2.67 16 23 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 24 C -0.14 -2.42 10.05 22.27 0.22 -2.20 16 25 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 26 C -0.13 -2.42 9.67 22.27 0.22 -2.20 16 27 H 0.06 1.86 6.57 -2.39 -0.02 1.85 16 28 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.07 2.41 6.47 -2.39 -0.02 2.40 16 32 H 0.05 2.27 6.82 -2.39 -0.02 2.25 16 33 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.09 2.38 5.97 -2.39 -0.01 2.37 16 35 H 0.04 1.17 6.41 -2.38 -0.02 1.15 16 36 H 0.38 8.82 9.05 -74.06 -0.67 8.15 16 37 H 0.06 1.19 6.43 -2.39 -0.02 1.17 16 38 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.06 1.04 7.40 -2.39 -0.02 1.03 16 40 H 0.12 2.48 7.11 -2.91 -0.02 2.46 16 41 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.13 2.02 7.95 -2.91 -0.02 2.00 16 Total: -1.00 -68.83 344.24 1.00 -67.82 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.29 Total: 21.98 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 4.52 Total: -32.32 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -3.75 Total: -84.81 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.91 Total: -18.47 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.85 Total: 45.80 kcal Total: -68.83 1.00 -67.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450483966.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.751 kcal (2) G-P(sol) polarization free energy of solvation -68.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds