Wall clock time and date at job start Mon Mar 30 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99827 * 2 1 4 4 C 1.53001 * 109.46935 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47419 * 65.00296 * 4 3 2 6 6 C 1.36935 * 119.99851 * 264.42824 * 5 4 3 7 7 H 1.08000 * 119.99879 * 146.16595 * 6 5 4 8 8 C 1.38809 * 120.00302 * 326.16713 * 6 5 4 9 9 N 1.31622 * 119.99921 * 337.63209 * 8 6 5 10 10 Si 1.86802 * 120.00213 * 157.62993 * 8 6 5 11 11 H 1.48508 * 109.46636 * 60.00386 * 10 8 6 12 12 H 1.48505 * 109.47002 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47422 * 300.00394 * 10 8 6 14 14 C 1.46501 * 119.99851 * 84.42566 * 5 4 3 15 15 C 1.53003 * 109.47159 * 90.00389 * 14 5 4 16 16 C 1.52997 * 109.47129 * 179.97438 * 15 14 5 17 17 H 1.08989 * 109.47175 * 54.99847 * 16 15 14 18 18 C 1.53003 * 109.47067 * 294.99652 * 16 15 14 19 19 C 1.50700 * 109.46873 * 175.00235 * 16 15 14 20 20 C 1.38239 * 120.00338 * 59.72641 * 19 16 15 21 21 C 1.38232 * 120.00024 * 179.78858 * 20 19 16 22 22 C 1.38240 * 120.00030 * 0.43807 * 21 20 19 23 23 C 1.38236 * 119.99601 * 359.81535 * 22 21 20 24 24 C 1.38236 * 120.00601 * 359.97279 * 23 22 21 25 25 H 1.08996 * 109.46730 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46896 * 299.99792 * 1 2 3 27 27 H 1.09003 * 109.46766 * 59.99947 * 1 2 3 28 28 H 1.08996 * 109.47190 * 60.00065 * 3 2 1 29 29 H 1.08996 * 109.47596 * 300.00125 * 3 2 1 30 30 H 1.09001 * 109.47111 * 304.99971 * 4 3 2 31 31 H 1.09004 * 109.47136 * 185.00358 * 4 3 2 32 32 H 0.96996 * 120.00132 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.47653 * 330.00424 * 14 5 4 34 34 H 1.09003 * 109.47011 * 210.00052 * 14 5 4 35 35 H 1.09003 * 109.47147 * 59.99574 * 15 14 5 36 36 H 1.08993 * 109.46840 * 299.99804 * 15 14 5 37 37 H 1.09005 * 109.47523 * 300.00346 * 18 16 15 38 38 H 1.09004 * 109.46646 * 60.00046 * 18 16 15 39 39 H 1.09000 * 109.47201 * 180.02562 * 18 16 15 40 40 H 1.08005 * 119.99838 * 359.97438 * 20 19 16 41 41 H 1.07999 * 119.99974 * 180.27391 * 21 20 19 42 42 H 1.07996 * 119.99989 * 179.83402 * 22 21 20 43 43 H 1.08004 * 119.99779 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.00046 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2067 -0.7842 -1.3045 7 1 3.9952 -1.3339 -2.2098 8 6 4.7127 -1.4449 -0.1936 9 7 5.3731 -0.7745 0.7267 10 14 4.4565 -3.2856 -0.0045 11 1 5.0754 -3.9922 -1.1549 12 1 5.0894 -3.7464 1.2574 13 1 3.0019 -3.5816 0.0338 14 6 4.1688 1.3873 -2.4494 15 6 5.6115 1.8950 -2.4920 16 6 5.8133 2.7537 -3.7420 17 1 5.0711 3.5517 -3.7583 18 6 5.6536 1.8831 -4.9901 19 6 7.1956 3.3535 -3.7216 20 6 8.3060 2.5305 -3.6933 21 6 9.5740 3.0807 -3.6790 22 6 9.7316 4.4540 -3.6837 23 6 8.6212 5.2771 -3.7067 24 6 7.3532 4.7269 -3.7255 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8465 -0.8899 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1766 0.0890 32 1 5.7263 -1.2361 1.5031 33 1 3.4857 2.2362 -2.4208 34 1 3.9678 0.7889 -3.3381 35 1 6.2947 1.0461 -2.5205 36 1 5.8124 2.4933 -1.6034 37 1 6.3958 1.0850 -4.9738 38 1 4.6538 1.4492 -5.0048 39 1 5.7978 2.4948 -5.8806 40 1 8.1827 1.4575 -3.6855 41 1 10.4415 2.4376 -3.6613 42 1 10.7223 4.8839 -3.6698 43 1 8.7444 6.3501 -3.7108 44 1 6.4858 5.3699 -3.7430 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453596330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:50 Heat of formation + Delta-G solvation = -27.905888 kcal Electronic energy + Delta-G solvation = -21804.193338 eV Core-core repulsion = 18721.198000 eV Total energy + Delta-G solvation = -3082.995337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37249 -38.89294 -37.60128 -35.99024 -33.30016 -31.74170 -31.38002 -30.12610 -28.72971 -27.11491 -25.99970 -24.70111 -23.65405 -23.07630 -21.65918 -20.54872 -18.65261 -17.73123 -17.26571 -16.70968 -16.51287 -16.23878 -15.99377 -15.58547 -15.42697 -15.24070 -14.76439 -14.40929 -14.31913 -14.10293 -13.59653 -13.42749 -13.36628 -12.98531 -12.84634 -12.69846 -12.45624 -12.38615 -12.29668 -12.09258 -12.03146 -11.87901 -11.54165 -11.48942 -11.45057 -11.13199 -10.42186 -10.33820 -9.75433 -9.51648 -8.49127 -7.73734 -5.25912 0.53971 0.56513 1.46280 1.50989 1.57397 2.59159 2.95337 3.20610 3.38361 3.69054 3.88850 3.96565 4.21801 4.26910 4.33871 4.37747 4.41882 4.53992 4.58814 4.62635 4.64068 4.70096 4.74779 4.76209 4.81821 4.84902 4.90093 4.98002 5.03010 5.13162 5.16655 5.24186 5.25628 5.31593 5.49923 5.61658 5.66398 5.68663 5.73763 5.86307 5.88709 6.20670 6.48883 6.67098 7.27034 7.98759 8.47021 9.25066 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.004596 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.761452 B = 6090.424383 C = 6881.915765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.140 3.860 5 N -0.592 5.592 6 C -0.235 4.235 7 H 0.048 0.952 8 C -0.035 4.035 9 N -0.921 5.921 10 Si 0.946 3.054 11 H -0.278 1.278 12 H -0.296 1.296 13 H -0.285 1.285 14 C 0.148 3.852 15 C -0.104 4.104 16 C -0.045 4.045 17 H 0.087 0.913 18 C -0.136 4.136 19 C -0.080 4.080 20 C -0.133 4.133 21 C -0.131 4.131 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.131 4.131 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.246 0.754 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 11.732 -8.569 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.024 4.024 4 C 0.013 3.987 5 N -0.312 5.312 6 C -0.366 4.366 7 H 0.066 0.934 8 C -0.230 4.230 9 N -0.567 5.567 10 Si 0.776 3.224 11 H -0.204 1.204 12 H -0.222 1.222 13 H -0.212 1.212 14 C 0.022 3.978 15 C -0.144 4.144 16 C -0.064 4.064 17 H 0.105 0.895 18 C -0.193 4.193 19 C -0.081 4.081 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.153 4.153 23 C -0.142 4.142 24 C -0.149 4.149 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.149 0.851 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.683 11.497 -8.442 14.280 hybrid contribution -0.153 -1.087 0.580 1.241 sum 0.530 10.410 -7.862 13.056 Atomic orbital electron populations 1.22827 0.81462 1.02639 1.00134 1.88126 1.19753 1.28842 1.95206 1.23224 0.96724 0.83924 0.98480 1.20929 0.89557 0.96193 0.91981 1.43914 1.76066 1.03995 1.07210 1.18995 1.34229 0.84374 0.98986 0.93404 1.25494 0.97608 1.00568 0.99378 1.70089 1.37553 1.36279 1.12807 0.85672 0.77580 0.82591 0.76581 1.20422 1.22224 1.21194 1.21064 0.93532 0.93579 0.89593 1.21959 0.99415 0.97396 0.95626 1.20154 0.93174 0.97806 0.95288 0.89518 1.21798 1.01877 0.99119 0.96488 1.20091 0.95223 0.94128 0.98613 1.21143 0.93245 0.99660 1.01071 1.21388 0.97045 0.96244 1.00204 1.21431 0.99932 0.93275 1.00628 1.21460 0.92187 1.00973 0.99533 1.21338 0.98545 0.94029 1.00960 0.89981 0.93457 0.93744 0.93436 0.94123 0.91093 0.93876 0.94472 0.93093 0.93553 0.94965 0.95105 0.93776 0.91967 0.91625 0.87556 0.85061 0.83886 0.83635 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.65 10.44 -148.98 -1.56 -19.20 16 3 C 0.06 2.21 6.28 71.98 0.45 2.66 16 4 C 0.14 6.70 5.63 86.38 0.49 7.18 16 5 N -0.59 -29.55 2.41 -702.00 -1.69 -31.24 16 6 C -0.24 -13.18 9.28 84.03 0.78 -12.40 16 7 H 0.05 2.72 7.92 -2.91 -0.02 2.69 16 8 C -0.03 -1.99 4.91 84.86 0.42 -1.57 16 9 N -0.92 -55.35 11.34 21.65 0.25 -55.10 16 10 Si 0.95 47.11 29.61 68.60 2.03 49.14 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 14 C 0.15 6.04 5.45 86.38 0.47 6.51 16 15 C -0.10 -4.05 4.74 30.59 0.15 -3.90 16 16 C -0.05 -1.34 2.56 -11.54 -0.03 -1.37 16 17 H 0.09 2.28 7.88 -2.39 -0.02 2.26 16 18 C -0.14 -3.73 8.76 71.98 0.63 -3.09 16 19 C -0.08 -2.35 4.78 -19.86 -0.09 -2.45 16 20 C -0.13 -4.06 8.76 22.27 0.20 -3.86 16 21 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 22 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 23 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 24 C -0.13 -3.25 9.67 22.27 0.22 -3.03 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.50 8.11 -2.39 -0.02 1.48 16 30 H 0.07 3.99 5.34 -2.39 -0.01 3.98 16 31 H 0.04 1.94 8.11 -2.38 -0.02 1.92 16 32 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 34 H 0.05 1.87 6.46 -2.39 -0.02 1.86 16 35 H 0.03 1.45 7.55 -2.39 -0.02 1.44 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.30 7.41 -2.38 -0.02 1.28 16 38 H 0.06 1.70 6.56 -2.38 -0.02 1.68 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.11 3.48 7.16 -2.91 -0.02 3.46 16 41 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 44 H 0.14 2.79 7.95 -2.91 -0.02 2.76 16 Total: -1.00 -66.70 356.95 5.56 -61.14 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.94 Total: 16.95 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 5.59 Total: -21.68 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -1.45 Total: -86.34 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -1.56 Total: -19.20 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -66.70 5.56 -61.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453596330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.234 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds