Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42892 * 109.47378 * 2 1 4 4 C 1.35908 * 116.99907 * 180.02562 * 3 2 1 5 5 C 1.38746 * 120.05602 * 359.97438 * 4 3 2 6 6 C 1.38126 * 119.94576 * 179.97438 * 5 4 3 7 7 C 1.38288 * 120.05386 * 0.26200 * 6 5 4 8 8 C 1.38243 * 120.10724 * 359.48327 * 7 6 5 9 9 C 1.50701 * 119.96851 * 180.25848 * 8 7 6 10 10 N 1.46901 * 109.47300 * 270.25411 * 9 8 7 11 11 C 1.46902 * 111.00183 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47092 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47037 * 299.99890 * 12 11 10 14 14 C 1.53001 * 109.47156 * 59.99925 * 12 11 10 15 15 C 1.50703 * 109.47052 * 180.02562 * 12 11 10 16 16 H 1.08000 * 120.00194 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00229 * 180.02562 * 15 12 11 18 18 N 1.31521 * 119.99808 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00242 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.46893 * 90.00273 * 19 17 15 21 21 H 1.48502 * 109.47207 * 210.00073 * 19 17 15 22 22 H 1.48504 * 109.47232 * 329.99967 * 19 17 15 23 23 C 1.38166 * 120.05887 * 0.51419 * 8 7 6 24 24 H 1.08997 * 109.47364 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47089 * 300.00606 * 1 2 3 26 26 H 1.09000 * 109.47040 * 60.00307 * 1 2 3 27 27 H 1.08998 * 109.47238 * 239.99111 * 2 1 3 28 28 H 1.09009 * 109.46444 * 119.99721 * 2 1 3 29 29 H 1.07999 * 120.02769 * 0.02562 * 5 4 3 30 30 H 1.08002 * 119.97098 * 179.97438 * 6 5 4 31 31 H 1.07993 * 119.94284 * 179.74698 * 7 6 5 32 32 H 1.08999 * 109.47316 * 30.25699 * 9 8 7 33 33 H 1.09008 * 109.47157 * 150.25356 * 9 8 7 34 34 H 1.00900 * 110.99699 * 56.05013 * 10 9 8 35 35 H 1.08999 * 109.46879 * 300.00409 * 11 10 9 36 36 H 1.09002 * 109.46866 * 60.00244 * 11 10 9 37 37 H 1.08995 * 109.47328 * 60.00029 * 13 12 11 38 38 H 1.09003 * 109.47165 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47483 * 300.00222 * 13 12 11 40 40 H 1.09005 * 109.46856 * 60.00035 * 14 12 11 41 41 H 1.08994 * 109.46964 * 179.97438 * 14 12 11 42 42 H 1.08995 * 109.46997 * 299.99842 * 14 12 11 43 43 H 0.96998 * 119.99994 * 179.97438 * 18 17 15 44 44 H 1.08006 * 120.02853 * 179.76883 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1999 0.4256 -0.0005 6 6 5.5689 0.6092 -0.0016 7 6 6.0963 1.8875 0.0028 8 6 5.2553 2.9847 -0.0026 9 6 5.8334 4.3764 -0.0037 10 7 6.0222 4.8293 1.3810 11 6 6.5850 6.1857 1.4191 12 6 6.7674 6.6215 2.8743 13 6 5.4116 6.6118 3.5833 14 6 7.7193 5.6543 3.5808 15 6 7.3442 8.0132 2.9134 16 1 7.5595 8.5346 1.9924 17 6 7.5979 8.6205 4.1249 18 7 7.3361 7.9855 5.2464 19 14 8.3135 10.3453 4.1733 20 1 7.2099 11.3388 4.1882 21 1 9.1393 10.5044 5.3973 22 1 9.1603 10.5638 2.9731 23 6 3.8851 2.8064 -0.0015 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 3.7885 -0.5729 -0.0005 30 1 6.2280 -0.2465 -0.0012 31 1 7.1669 2.0289 0.0060 32 1 6.7943 4.3703 -0.5182 33 1 5.1505 5.0531 -0.5174 34 1 6.6001 4.1831 1.8971 35 1 7.5510 6.1925 0.9143 36 1 5.9069 6.8747 0.9154 37 1 4.9940 5.6054 3.5550 38 1 5.5415 6.9227 4.6200 39 1 4.7334 7.3008 3.0800 40 1 8.6852 5.6612 3.0757 41 1 7.8496 5.9650 4.6174 42 1 7.3017 4.6479 3.5526 43 1 7.5150 8.4126 6.0987 44 1 3.2285 3.6639 -0.0019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459684875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = -25.175089 kcal Electronic energy + Delta-G solvation = -21192.573732 eV Core-core repulsion = 18109.696811 eV Total energy + Delta-G solvation = -3082.876921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17822 -37.99675 -36.65639 -34.04864 -32.16879 -31.60188 -30.12215 -29.39469 -25.82139 -25.52247 -25.14897 -23.80849 -22.77723 -22.50698 -20.68397 -18.46061 -17.85695 -16.25443 -16.10836 -16.00569 -15.87195 -15.21736 -14.53193 -14.17062 -13.83198 -13.73720 -13.41407 -13.33950 -12.85627 -12.67721 -12.45466 -12.12636 -11.94494 -11.89534 -11.56485 -11.46854 -11.08295 -10.98097 -10.87207 -10.74846 -10.58420 -10.53545 -10.14297 -10.02930 -9.34890 -9.10395 -8.78326 -8.58315 -8.26335 -8.18510 -7.66772 -5.88325 -3.98780 1.34881 1.49274 3.08585 3.33324 3.40125 3.42885 3.78000 4.46602 4.65803 4.66647 4.78487 4.90778 4.94652 5.03770 5.19113 5.21974 5.37020 5.38949 5.45163 5.51876 5.54936 5.75492 5.80315 5.96510 6.09205 6.31348 6.36390 6.40996 6.44852 6.68678 6.75262 6.81376 6.92455 7.11595 7.20386 7.40280 7.43187 7.50916 7.74946 7.79240 7.86397 7.99854 8.24679 8.38256 8.58947 9.02776 9.66087 11.12191 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.003122 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.112612 B = 8966.021222 C = 9349.017635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.126 3.874 5 C -0.215 4.215 6 C -0.083 4.083 7 C -0.152 4.152 8 C -0.032 4.032 9 C 0.093 3.907 10 N -0.680 5.680 11 C 0.075 3.925 12 C 0.069 3.931 13 C -0.119 4.119 14 C -0.133 4.133 15 C -0.506 4.506 16 H 0.052 0.948 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.129 4.129 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.339 0.661 35 H 0.014 0.986 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.083 0.917 42 H 0.011 0.989 43 H 0.258 0.742 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.860 -16.778 -10.735 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.231 6.231 4 C 0.081 3.919 5 C -0.234 4.234 6 C -0.101 4.101 7 C -0.171 4.171 8 C -0.033 4.033 9 C -0.036 4.036 10 N -0.312 5.312 11 C -0.053 4.053 12 C 0.069 3.931 13 C -0.177 4.177 14 C -0.191 4.191 15 C -0.545 4.545 16 H 0.070 0.930 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.148 4.148 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.102 0.898 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.648 -16.372 -10.466 21.269 hybrid contribution 1.440 0.501 -0.203 1.539 sum -7.208 -15.871 -10.669 20.437 Atomic orbital electron populations 1.21775 0.92857 1.02683 1.03634 1.22737 0.95792 0.82283 1.01196 1.86079 1.19268 1.28936 1.88810 1.18970 0.82044 0.94162 0.96759 1.21148 0.94452 0.97693 1.10088 1.20850 0.94228 0.97088 0.97920 1.20987 0.99737 0.92130 1.04274 1.19721 0.92388 0.95429 0.95730 1.20918 0.98801 0.91466 0.92376 1.60649 1.55455 1.05028 1.10090 1.22191 0.95282 0.87189 1.00687 1.18087 0.93140 0.93825 0.88080 1.21641 0.96258 0.97040 1.02770 1.21839 0.97314 0.95580 1.04340 1.21115 1.41585 0.99608 0.92194 0.92995 1.24888 0.95564 0.97404 0.95752 1.69841 1.48498 1.36859 0.97162 0.86658 0.79092 0.85230 0.77338 1.20797 1.21351 1.20127 1.20315 0.94784 0.94702 1.05022 0.90524 0.91397 0.91552 0.92280 0.92136 0.85966 0.86059 0.86135 0.94814 0.90453 0.84185 0.96807 0.92443 0.96064 0.90772 0.96312 0.96226 0.89807 0.97021 0.93211 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.06 0.48 5.46 37.16 0.20 0.68 16 3 O -0.32 -4.02 10.14 -19.45 -0.20 -4.22 16 4 C 0.13 1.69 6.69 -39.22 -0.26 1.42 16 5 C -0.21 -2.50 9.04 -39.43 -0.36 -2.86 16 6 C -0.08 -0.95 10.04 -39.60 -0.40 -1.35 16 7 C -0.15 -1.96 9.70 -39.56 -0.38 -2.34 16 8 C -0.03 -0.46 5.39 -104.65 -0.56 -1.02 16 9 C 0.09 1.43 5.81 -4.98 -0.03 1.40 16 10 N -0.68 -12.49 5.70 -115.05 -0.66 -13.15 16 11 C 0.07 1.58 4.59 -3.82 -0.02 1.56 16 12 C 0.07 1.70 0.57 -155.66 -0.09 1.61 16 13 C -0.12 -2.98 8.09 37.16 0.30 -2.68 16 14 C -0.13 -3.19 7.92 37.16 0.29 -2.89 16 15 C -0.51 -13.76 8.01 -34.44 -0.28 -14.03 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 18 N -0.88 -24.77 9.35 55.43 0.52 -24.25 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.13 -1.87 9.64 -39.43 -0.38 -2.25 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.06 0.48 7.66 -51.92 -0.40 0.09 16 29 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.08 1.16 8.09 -51.92 -0.42 0.74 16 34 H 0.34 6.23 6.76 -39.29 -0.27 5.96 16 35 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.49 7.60 -51.93 -0.39 0.09 16 38 H 0.07 2.02 6.07 -51.93 -0.32 1.70 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 42 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.13 1.91 8.06 -52.48 -0.42 1.48 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -28.87 350.52 -9.11 -37.97 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.37 Total: 3.83 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -1.67 Total: -21.74 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.14 Total: -37.39 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.20 Total: -4.22 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.87 -9.11 -37.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.799 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds