Wall clock time and date at job start Mon Mar 30 2020 02:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38604 * 120.40609 * 2 1 4 4 C 1.38599 * 118.56353 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.40365 * 179.97438 * 4 3 2 6 6 N 1.32279 * 119.19431 * 0.02562 * 4 3 2 7 7 C 1.32485 * 120.74400 * 359.97438 * 6 4 3 8 8 N 1.38403 * 119.22137 * 179.97438 * 7 6 4 9 9 C 1.46506 * 119.99857 * 0.02562 * 8 7 6 10 10 C 1.50703 * 109.46877 * 269.72319 * 9 8 7 11 11 H 1.08005 * 119.99817 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99848 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00321 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46938 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47198 * 120.00527 * 14 12 10 17 17 H 1.48498 * 109.47360 * 240.00281 * 14 12 10 18 18 C 1.46499 * 120.00149 * 179.72500 * 8 7 6 19 19 C 1.53001 * 109.47147 * 270.27393 * 18 8 7 20 20 C 1.53005 * 109.47315 * 179.97438 * 19 18 8 21 21 C 1.53002 * 109.46840 * 65.00113 * 20 19 18 22 22 C 1.52999 * 109.47303 * 185.00121 * 20 19 18 23 23 N 1.32285 * 120.40122 * 180.30328 * 2 1 3 24 24 H 1.08999 * 109.47387 * 89.99669 * 1 2 3 25 25 H 1.08998 * 109.47408 * 209.99315 * 1 2 3 26 26 H 1.08999 * 109.46858 * 329.99467 * 1 2 3 27 27 H 1.08009 * 120.71555 * 0.05542 * 3 2 1 28 28 H 1.09002 * 109.46833 * 270.02342 * 5 4 3 29 29 H 1.09003 * 109.47090 * 30.01888 * 5 4 3 30 30 H 1.09000 * 109.47183 * 150.01796 * 5 4 3 31 31 H 1.09000 * 109.46803 * 29.71798 * 9 8 7 32 32 H 1.09000 * 109.47214 * 149.72592 * 9 8 7 33 33 H 0.96998 * 119.99944 * 179.97438 * 13 12 10 34 34 H 1.08994 * 109.47173 * 30.27941 * 18 8 7 35 35 H 1.09005 * 109.47077 * 150.28112 * 18 8 7 36 36 H 1.09003 * 109.47272 * 300.00321 * 19 18 8 37 37 H 1.08997 * 109.47273 * 60.00010 * 19 18 8 38 38 H 1.08997 * 109.46655 * 305.00766 * 20 19 18 39 39 H 1.08996 * 109.46938 * 180.02562 * 21 20 19 40 40 H 1.09009 * 109.47041 * 300.00222 * 21 20 19 41 41 H 1.08999 * 109.47056 * 59.99886 * 21 20 19 42 42 H 1.08997 * 109.46738 * 59.99735 * 22 20 19 43 43 H 1.08996 * 109.46873 * 179.97438 * 22 20 19 44 44 H 1.08999 * 109.46965 * 300.00342 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1954 0.0000 4 6 3.5937 1.1508 -0.0005 5 6 4.3978 2.4254 -0.0011 6 7 4.2015 -0.0241 -0.0016 7 6 3.5013 -1.1488 -0.0015 8 7 4.1696 -2.3607 -0.0032 9 6 5.6344 -2.3895 -0.0043 10 6 6.1354 -2.4049 -1.4255 11 1 5.4329 -2.3939 -2.2459 12 6 7.4904 -2.4319 -1.6786 13 7 8.3458 -2.4448 -0.6796 14 14 8.1114 -2.4518 -3.4402 15 1 6.9558 -2.4333 -4.3727 16 1 8.9594 -1.2564 -3.6797 17 1 8.9129 -3.6809 -3.6688 18 6 3.4124 -3.6148 0.0029 19 6 3.1506 -4.0455 1.4475 20 6 2.3592 -5.3550 1.4539 21 6 3.2135 -6.4701 0.8476 22 6 1.9898 -5.7207 2.8929 23 7 2.1764 -1.1409 -0.0060 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.6868 2.1412 0.0009 28 1 4.5909 2.7327 -1.0290 29 1 3.8393 3.2076 0.5130 30 1 5.3447 2.2579 0.5121 31 1 6.0155 -1.5047 0.5057 32 1 5.9807 -3.2844 0.5127 33 1 9.2991 -2.4642 -0.8577 34 1 2.4622 -3.4680 -0.5104 35 1 3.9859 -4.3880 -0.5084 36 1 4.1010 -4.1924 1.9608 37 1 2.5772 -3.2724 1.9589 38 1 1.4501 -5.2329 0.8651 39 1 2.6496 -7.4029 0.8517 40 1 3.4767 -6.2096 -0.1777 41 1 4.1227 -6.5922 1.4363 42 1 1.3813 -4.9262 3.3248 43 1 1.4256 -6.6533 2.8973 44 1 2.8990 -5.8427 3.4816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520435963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:02 Heat of formation + Delta-G solvation = 29.695838 kcal Electronic energy + Delta-G solvation = -22036.058647 eV Core-core repulsion = 18987.853859 eV Total energy + Delta-G solvation = -3048.204788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32441 -37.28120 -35.34778 -34.13836 -32.74917 -31.60191 -29.37453 -28.45322 -27.15701 -26.98041 -26.45705 -23.41059 -23.15810 -20.88512 -20.24033 -19.61948 -16.98869 -16.50971 -16.14009 -15.05158 -14.85747 -14.67834 -14.63760 -14.00788 -13.77024 -13.43369 -13.16840 -12.96407 -12.75563 -12.55270 -12.39630 -12.20828 -12.09364 -12.00941 -11.73844 -11.62083 -11.23953 -11.08831 -10.78390 -10.75991 -10.50729 -10.44391 -10.19706 -10.11526 -10.02468 -9.72381 -9.61757 -9.05133 -8.44252 -8.25707 -6.94969 -6.00000 -4.05577 1.82869 1.89133 3.29831 3.37273 3.41667 3.64221 4.44127 4.55700 4.66253 4.89634 5.07386 5.11740 5.18086 5.30730 5.32363 5.61022 5.63681 5.66401 5.69918 5.74192 5.75849 5.85946 5.89705 5.93506 5.94582 6.02147 6.04995 6.05425 6.16125 6.27596 6.32396 6.37136 6.40210 6.43515 6.64976 6.74495 6.92863 7.17293 7.48625 7.73267 7.88750 7.99705 8.27632 8.45178 8.94711 9.19120 9.58752 11.05863 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.007702 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.154126 B = 3634.686197 C = 5957.268782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.209 3.791 3 C -0.320 4.320 4 C 0.215 3.785 5 C -0.102 4.102 6 N -0.550 5.550 7 C 0.578 3.422 8 N -0.561 5.561 9 C 0.257 3.743 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.062 3.938 13 N -0.895 5.895 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.134 3.866 19 C -0.126 4.126 20 C -0.092 4.092 21 C -0.150 4.150 22 C -0.144 4.144 23 N -0.586 5.586 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.128 0.872 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.744 1.667 4.235 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.060 3.940 3 C -0.347 4.347 4 C 0.064 3.936 5 C -0.159 4.159 6 N -0.273 5.273 7 C 0.223 3.777 8 N -0.272 5.272 9 C 0.138 3.862 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.139 4.139 13 N -0.534 5.534 14 Si 0.723 3.277 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.210 1.210 18 C 0.010 3.990 19 C -0.165 4.165 20 C -0.111 4.111 21 C -0.207 4.207 22 C -0.201 4.201 23 N -0.312 5.312 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.887 0.526 4.263 13.584 hybrid contribution 0.102 0.818 -1.028 1.318 sum -12.785 1.344 3.234 13.256 Atomic orbital electron populations 1.20662 0.89088 1.03035 1.02842 1.21196 0.96314 0.87944 0.88578 1.21898 0.95493 0.99343 1.17977 1.21366 0.91062 0.93405 0.87744 1.20700 1.00128 0.91990 1.03120 1.67939 1.40232 0.97212 1.21885 1.19335 0.84248 0.87017 0.87105 1.46884 1.07967 1.00003 1.72301 1.19338 0.71038 0.98458 0.97375 1.21468 0.91603 1.50413 0.92320 0.92694 1.24887 0.96615 0.95257 0.97167 1.69943 1.02141 1.50841 1.30506 0.86498 0.78755 0.77569 0.84923 1.19957 1.20924 1.20984 1.21367 0.96517 0.85314 0.95829 1.22016 1.00070 0.96163 0.98272 1.21032 0.98649 0.95036 0.96358 1.21907 0.99747 0.97577 1.01478 1.21816 1.01100 1.00687 0.96541 1.67735 1.08143 1.30293 1.25020 0.90469 0.90655 0.90846 0.85377 0.90237 0.90954 0.90171 0.93289 0.95064 0.92865 0.90857 0.90378 0.91987 0.92211 0.91335 0.93285 0.92090 0.92615 0.93018 0.93104 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.22 36.00 0.37 -0.78 16 2 C 0.21 3.46 6.82 -82.26 -0.56 2.90 16 3 C -0.32 -5.11 9.53 -39.31 -0.37 -5.48 16 4 C 0.21 3.96 6.82 -82.27 -0.56 3.40 16 5 C -0.10 -1.46 10.22 36.01 0.37 -1.09 16 6 N -0.55 -12.53 9.05 -10.16 -0.09 -12.62 16 7 C 0.58 13.04 8.17 -322.82 -2.64 10.40 16 8 N -0.56 -12.84 2.56 -177.40 -0.45 -13.29 16 9 C 0.26 6.79 5.17 -5.19 -0.03 6.76 16 10 C -0.52 -14.78 9.39 -34.44 -0.32 -15.10 16 11 H 0.05 1.61 7.81 -52.48 -0.41 1.20 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 14 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 C 0.13 2.54 5.16 -4.04 -0.02 2.52 16 19 C -0.13 -2.07 5.01 -26.73 -0.13 -2.20 16 20 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 21 C -0.15 -1.92 8.95 37.16 0.33 -1.59 16 22 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 23 N -0.59 -11.62 9.05 -10.16 -0.09 -11.71 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.42 7.32 -51.93 -0.38 1.04 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.07 1.37 7.33 -51.93 -0.38 0.99 16 35 H 0.08 1.51 6.50 -51.93 -0.34 1.17 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.83 6.57 -51.92 -0.34 0.49 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -31.81 361.69 -10.80 -42.61 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.74 Total: -0.36 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -3.59 Total: -1.38 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.10 Total: -63.30 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.81 -10.80 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520435963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.309 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds