Wall clock time and date at job start Mon Mar 30 2020 01:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47049 * 2 1 4 4 O 1.42900 * 109.46885 * 240.00277 * 2 1 3 5 5 C 1.52997 * 109.47413 * 119.99966 * 2 1 3 6 6 N 1.46908 * 109.47042 * 187.87031 * 5 2 1 7 7 C 1.46897 * 111.00072 * 56.62915 * 6 5 2 8 8 C 1.52995 * 109.47279 * 69.91969 * 7 6 5 9 9 C 1.53004 * 109.47070 * 184.83298 * 8 7 6 10 10 C 1.50707 * 109.46676 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00327 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99567 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00023 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47038 * 60.00017 * 14 12 10 16 16 H 1.48494 * 109.47287 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47012 * 300.00361 * 14 12 10 18 18 C 1.46897 * 110.99720 * 292.67364 * 6 5 2 19 19 C 1.50697 * 109.47513 * 289.98264 * 18 6 5 20 20 C 1.38233 * 120.00565 * 265.56664 * 19 18 6 21 21 C 1.38232 * 120.00427 * 179.76504 * 20 19 18 22 22 C 1.38229 * 119.99798 * 0.48057 * 21 20 19 23 23 C 1.38237 * 120.00374 * 359.78703 * 22 21 20 24 24 C 1.38240 * 119.99808 * 359.96575 * 23 22 21 25 25 H 1.08999 * 109.47181 * 299.99493 * 1 2 3 26 26 H 1.08995 * 109.47552 * 60.00434 * 1 2 3 27 27 H 1.08998 * 109.46681 * 180.02562 * 1 2 3 28 28 H 0.96700 * 113.99987 * 306.95311 * 4 2 1 29 29 H 1.08997 * 109.47069 * 67.87080 * 5 2 1 30 30 H 1.08999 * 109.47154 * 307.86667 * 5 2 1 31 31 H 1.09003 * 109.46913 * 189.92498 * 7 6 5 32 32 H 1.09005 * 109.46858 * 309.92182 * 7 6 5 33 33 H 1.08998 * 109.47260 * 304.83428 * 8 7 6 34 34 H 1.08996 * 109.47235 * 64.83203 * 8 7 6 35 35 H 1.09004 * 109.46720 * 299.99654 * 9 8 7 36 36 H 1.08994 * 109.47245 * 60.00403 * 9 8 7 37 37 H 0.97000 * 119.99823 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.46966 * 169.98243 * 18 6 5 39 39 H 1.09004 * 109.47273 * 49.98444 * 18 6 5 40 40 H 1.08007 * 119.99695 * 359.97438 * 20 19 18 41 41 H 1.08000 * 119.99817 * 180.24652 * 21 20 19 42 42 H 1.08000 * 119.99911 * 179.77083 * 22 21 20 43 43 H 1.07996 * 120.00451 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.99951 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.4968 -0.5591 1.3477 7 6 3.8687 0.8620 1.3602 8 6 3.4272 1.4932 2.6820 9 6 3.7054 2.9973 2.6470 10 6 3.2709 3.6189 3.9494 11 1 2.8400 3.0028 4.7246 12 6 3.4247 4.9741 4.1515 13 7 3.9509 5.7241 3.2080 14 14 2.8856 5.7448 5.7654 15 1 3.6404 5.1271 6.8854 16 1 3.1557 7.2045 5.7315 17 1 1.4318 5.5153 5.9623 18 6 4.1805 -1.2728 0.2609 19 6 4.0556 -2.7586 0.4790 20 6 5.0591 -3.4481 1.1336 21 6 4.9422 -4.8102 1.3378 22 6 3.8264 -5.4847 0.8787 23 6 2.8254 -4.7963 0.2192 24 6 2.9399 -3.4332 0.0194 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6366 -1.5589 -1.2883 29 1 1.7962 -1.7814 1.1816 30 1 1.5665 -0.2951 2.1336 31 1 4.9497 0.9555 1.2559 32 1 3.3782 1.3731 0.5317 33 1 2.3601 1.3243 2.8268 34 1 3.9814 1.0402 3.5040 35 1 4.7725 3.1661 2.5023 36 1 3.1510 3.4503 1.8251 37 1 4.0587 6.6776 3.3501 38 1 5.2343 -0.9945 0.2501 39 1 3.7245 -1.0058 -0.6924 40 1 5.9330 -2.9218 1.4885 41 1 5.7245 -5.3481 1.8528 42 1 3.7368 -6.5495 1.0350 43 1 1.9538 -5.3233 -0.1399 44 1 2.1580 -2.8955 -0.4962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525486935.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:03 Heat of formation + Delta-G solvation = -29.325776 kcal Electronic energy + Delta-G solvation = -21814.472073 eV Core-core repulsion = 18731.415165 eV Total energy + Delta-G solvation = -3083.056908 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93810 -38.40417 -35.98555 -33.71550 -32.26329 -31.40045 -30.95006 -30.24661 -26.81497 -26.63750 -24.09590 -22.88137 -22.42002 -21.57889 -20.53244 -19.58912 -16.82340 -16.61157 -16.46023 -16.07140 -15.60733 -15.16813 -14.74073 -14.55886 -14.33553 -14.20102 -13.58884 -13.40739 -12.99648 -12.60388 -12.39902 -12.28258 -12.02245 -11.89727 -11.68510 -11.41835 -11.27895 -11.01832 -10.95480 -10.83054 -10.77578 -10.57742 -10.47588 -10.15980 -9.55479 -9.31489 -9.05351 -8.93702 -8.74754 -8.31582 -7.68297 -5.97098 -3.99129 1.33294 1.37545 3.35041 3.39243 3.41958 3.70440 4.13811 4.40227 4.50583 4.80499 4.85217 4.86619 4.96925 5.05237 5.13861 5.14574 5.38557 5.40976 5.43371 5.49402 5.62494 5.69804 5.79838 5.83813 5.94706 6.01635 6.03068 6.04831 6.18444 6.29751 6.39096 6.41060 6.47004 6.68722 6.74419 6.82535 6.98265 7.15880 7.38760 7.42413 7.54906 7.71636 7.86730 8.03615 8.47039 9.08023 9.64688 11.14275 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.003723 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.085874 B = 7519.907862 C = 8147.324988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.055 3.945 3 H 0.112 0.888 4 O -0.555 6.555 5 C 0.019 3.981 6 N -0.525 5.525 7 C 0.049 3.951 8 C -0.103 4.103 9 C 0.022 3.978 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.056 3.944 19 C -0.057 4.057 20 C -0.105 4.105 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.119 4.119 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.364 0.636 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 -20.359 -8.477 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.004 4.004 3 H 0.130 0.870 4 O -0.363 6.363 5 C -0.109 4.109 6 N -0.247 5.247 7 C -0.077 4.077 8 C -0.141 4.141 9 C -0.015 4.015 10 C -0.557 4.557 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.070 4.070 19 C -0.058 4.058 20 C -0.124 4.124 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.138 4.138 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.213 0.787 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.755 -19.814 -8.131 21.594 hybrid contribution -0.892 0.372 0.352 1.029 sum -3.647 -19.442 -7.779 21.255 Atomic orbital electron populations 1.22443 0.96255 1.02111 1.03229 1.22902 0.93545 0.98533 0.85432 0.87025 1.86604 1.69981 1.33369 1.46326 1.22946 0.89519 1.00835 0.97623 1.62309 1.05679 1.12651 1.44023 1.22417 1.00419 0.85654 0.99246 1.21627 0.99726 0.98310 0.94418 1.19071 0.96930 0.88637 0.96895 1.21218 1.40659 0.92844 1.00947 0.92771 1.25024 0.95384 0.97447 0.96623 1.69958 1.44840 1.05745 1.33067 0.86671 0.79123 0.78076 0.84207 1.20231 1.21335 1.20295 1.21658 0.99891 0.89116 0.96351 1.19897 0.93882 0.95700 0.96289 1.21109 0.99163 0.94047 0.98034 1.21144 0.98025 0.94659 1.00019 1.21071 0.94611 0.99636 0.99491 1.21088 0.98919 0.94434 0.99713 1.21059 0.97642 0.94185 1.00882 0.91001 0.91942 0.92623 0.78656 0.90562 0.89353 0.91399 0.94448 0.93555 0.92781 0.96674 0.96892 0.93006 0.90976 0.89015 0.86075 0.86368 0.86550 0.86468 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.47 37.16 0.35 -1.55 16 2 C 0.06 0.69 3.33 -26.73 -0.09 0.60 16 3 H 0.11 1.68 5.74 -51.93 -0.30 1.38 16 4 O -0.55 -6.45 9.79 -35.23 -0.34 -6.80 16 5 C 0.02 0.26 4.69 -3.82 -0.02 0.24 16 6 N -0.52 -7.89 4.64 -236.07 -1.10 -8.98 16 7 C 0.05 0.87 4.74 -3.83 -0.02 0.85 16 8 C -0.10 -2.14 5.25 -26.73 -0.14 -2.29 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 14 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.06 0.75 4.87 -4.98 -0.02 0.73 16 19 C -0.06 -0.70 5.11 -104.62 -0.53 -1.23 16 20 C -0.10 -1.25 9.68 -39.59 -0.38 -1.63 16 21 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 22 C -0.13 -1.26 10.05 -39.59 -0.40 -1.66 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.26 7.94 -39.58 -0.31 -1.57 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.36 3.08 6.35 45.63 0.29 3.37 16 29 H 0.08 0.92 5.40 -51.93 -0.28 0.63 16 30 H 0.09 1.27 6.65 -51.93 -0.35 0.93 16 31 H 0.07 1.20 7.80 -51.93 -0.40 0.80 16 32 H 0.04 0.67 5.57 -51.93 -0.29 0.38 16 33 H 0.05 0.94 6.57 -51.93 -0.34 0.60 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 0.97 7.71 -51.93 -0.40 0.57 16 39 H 0.09 1.23 4.65 -51.86 -0.24 0.99 16 40 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.11 1.00 4.45 -52.49 -0.23 0.77 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -31.13 341.36 -9.81 -40.94 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.31 Total: 3.24 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -2.91 Total: -23.93 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.36 Total: -35.45 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.34 Total: -6.80 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.13 -9.81 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525486935.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.616 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds