Wall clock time and date at job start Mon Mar 30 2020 01:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47049 * 2 1 4 4 O 1.42900 * 109.46885 * 240.00277 * 2 1 3 5 5 C 1.52997 * 109.47413 * 119.99966 * 2 1 3 6 6 N 1.46908 * 109.47042 * 187.87031 * 5 2 1 7 7 C 1.46897 * 111.00072 * 56.62915 * 6 5 2 8 8 C 1.52995 * 109.47279 * 69.91969 * 7 6 5 9 9 C 1.53004 * 109.47070 * 184.83298 * 8 7 6 10 10 C 1.50707 * 109.46676 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00327 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99567 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00023 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47038 * 60.00017 * 14 12 10 16 16 H 1.48494 * 109.47287 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47012 * 300.00361 * 14 12 10 18 18 C 1.46897 * 110.99720 * 292.67364 * 6 5 2 19 19 C 1.50697 * 109.47513 * 289.98264 * 18 6 5 20 20 C 1.38233 * 120.00565 * 265.56664 * 19 18 6 21 21 C 1.38232 * 120.00427 * 179.76504 * 20 19 18 22 22 C 1.38229 * 119.99798 * 0.48057 * 21 20 19 23 23 C 1.38237 * 120.00374 * 359.78703 * 22 21 20 24 24 C 1.38240 * 119.99808 * 359.96575 * 23 22 21 25 25 H 1.08999 * 109.47181 * 299.99493 * 1 2 3 26 26 H 1.08995 * 109.47552 * 60.00434 * 1 2 3 27 27 H 1.08998 * 109.46681 * 180.02562 * 1 2 3 28 28 H 0.96700 * 113.99987 * 306.95311 * 4 2 1 29 29 H 1.08997 * 109.47069 * 67.87080 * 5 2 1 30 30 H 1.08999 * 109.47154 * 307.86667 * 5 2 1 31 31 H 1.09003 * 109.46913 * 189.92498 * 7 6 5 32 32 H 1.09005 * 109.46858 * 309.92182 * 7 6 5 33 33 H 1.08998 * 109.47260 * 304.83428 * 8 7 6 34 34 H 1.08996 * 109.47235 * 64.83203 * 8 7 6 35 35 H 1.09004 * 109.46720 * 299.99654 * 9 8 7 36 36 H 1.08994 * 109.47245 * 60.00403 * 9 8 7 37 37 H 0.97000 * 119.99823 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.46966 * 169.98243 * 18 6 5 39 39 H 1.09004 * 109.47273 * 49.98444 * 18 6 5 40 40 H 1.08007 * 119.99695 * 359.97438 * 20 19 18 41 41 H 1.08000 * 119.99817 * 180.24652 * 21 20 19 42 42 H 1.08000 * 119.99911 * 179.77083 * 22 21 20 43 43 H 1.07996 * 120.00451 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.99951 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.4968 -0.5591 1.3477 7 6 3.8687 0.8620 1.3602 8 6 3.4272 1.4932 2.6820 9 6 3.7054 2.9973 2.6470 10 6 3.2709 3.6189 3.9494 11 1 2.8400 3.0028 4.7246 12 6 3.4247 4.9741 4.1515 13 7 3.9509 5.7241 3.2080 14 14 2.8856 5.7448 5.7654 15 1 3.6404 5.1271 6.8854 16 1 3.1557 7.2045 5.7315 17 1 1.4318 5.5153 5.9623 18 6 4.1805 -1.2728 0.2609 19 6 4.0556 -2.7586 0.4790 20 6 5.0591 -3.4481 1.1336 21 6 4.9422 -4.8102 1.3378 22 6 3.8264 -5.4847 0.8787 23 6 2.8254 -4.7963 0.2192 24 6 2.9399 -3.4332 0.0194 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6366 -1.5589 -1.2883 29 1 1.7962 -1.7814 1.1816 30 1 1.5665 -0.2951 2.1336 31 1 4.9497 0.9555 1.2559 32 1 3.3782 1.3731 0.5317 33 1 2.3601 1.3243 2.8268 34 1 3.9814 1.0402 3.5040 35 1 4.7725 3.1661 2.5023 36 1 3.1510 3.4503 1.8251 37 1 4.0587 6.6776 3.3501 38 1 5.2343 -0.9945 0.2501 39 1 3.7245 -1.0058 -0.6924 40 1 5.9330 -2.9218 1.4885 41 1 5.7245 -5.3481 1.8528 42 1 3.7368 -6.5495 1.0350 43 1 1.9538 -5.3233 -0.1399 44 1 2.1580 -2.8955 -0.4962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525486935.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:02 Heat of formation + Delta-G solvation = -48.637802 kcal Electronic energy + Delta-G solvation = -21815.309506 eV Core-core repulsion = 18731.415165 eV Total energy + Delta-G solvation = -3083.894340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92186 -39.31726 -37.19412 -35.59575 -33.69039 -32.69990 -31.72875 -31.42721 -28.53774 -27.65257 -25.66222 -23.97267 -23.39994 -22.88190 -21.68808 -21.03573 -18.49372 -17.71008 -17.51776 -17.36537 -16.73365 -16.42950 -16.07215 -15.69967 -15.61998 -15.24977 -15.00717 -14.39379 -14.17985 -14.02937 -13.55269 -13.42413 -13.32532 -13.04639 -12.92288 -12.82203 -12.63003 -12.47010 -12.46308 -12.31270 -11.93362 -11.80037 -11.71138 -11.51355 -11.35074 -11.14401 -11.05615 -10.54386 -9.72598 -9.61490 -8.84424 -8.19732 -6.30927 0.51853 0.58269 1.39552 1.42854 1.50810 2.40935 2.81174 3.13155 3.22703 3.34131 3.82311 3.93868 4.01934 4.07973 4.18245 4.24364 4.27459 4.34540 4.38320 4.46872 4.63425 4.70231 4.75497 4.81404 4.84454 4.91312 4.97487 5.04268 5.06265 5.19597 5.20425 5.24019 5.26430 5.31758 5.52823 5.63116 5.69484 5.74807 5.82977 5.86256 6.10913 6.19817 6.23544 6.28898 6.73696 6.85695 7.38214 8.91986 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.003723 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.085874 B = 7519.907862 C = 8147.324988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 H 0.080 0.920 4 O -0.561 6.561 5 C 0.022 3.978 6 N -0.531 5.531 7 C 0.062 3.938 8 C -0.085 4.085 9 C 0.028 3.972 10 C -0.543 4.543 11 H 0.059 0.941 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.266 1.266 18 C 0.062 3.938 19 C -0.075 4.075 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.132 4.132 23 C -0.124 4.124 24 C -0.124 4.124 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.380 0.620 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.046 0.954 35 H -0.012 1.012 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 -22.482 -8.096 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.004 3.996 3 H 0.098 0.902 4 O -0.371 6.371 5 C -0.106 4.106 6 N -0.253 5.253 7 C -0.065 4.065 8 C -0.123 4.123 9 C -0.010 4.010 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.789 3.211 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.190 1.190 18 C -0.064 4.064 19 C -0.076 4.076 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.142 4.142 24 C -0.142 4.142 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.232 0.768 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.007 0.993 36 H 0.009 0.991 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.152 0.848 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.290 -21.968 -7.758 23.689 hybrid contribution -0.391 0.949 0.179 1.042 sum -4.681 -21.019 -7.579 22.829 Atomic orbital electron populations 1.22388 0.94390 1.03734 1.02969 1.22630 0.94866 0.96831 0.85308 0.90204 1.86574 1.70327 1.34531 1.45700 1.22965 0.88148 1.01959 0.97535 1.62225 1.07158 1.10600 1.45334 1.22107 0.99824 0.87509 0.97107 1.21346 0.99945 0.94949 0.96072 1.18956 0.94690 0.91957 0.95398 1.21651 1.40909 0.93587 1.01901 0.92319 1.25986 0.95205 0.98034 1.00592 1.70096 1.45806 1.06154 1.35357 0.85508 0.79193 0.77076 0.79334 1.19241 1.20782 1.19040 1.21600 0.99035 0.90106 0.95661 1.19835 0.95133 0.94738 0.97870 1.21223 0.99265 0.95047 0.98863 1.21392 0.99005 0.94139 1.00078 1.21447 0.94029 1.00967 0.98521 1.21449 0.99728 0.94100 0.98932 1.21254 0.97353 0.94903 1.00684 0.91662 0.91812 0.90051 0.76815 0.88644 0.90599 0.92095 0.94856 0.92999 0.93476 0.99314 0.99112 0.92774 0.92010 0.88902 0.86727 0.84778 0.84089 0.83737 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 9.47 71.98 0.68 -2.72 16 2 C 0.06 1.54 3.33 30.59 0.10 1.64 16 3 H 0.08 2.48 5.74 -2.39 -0.01 2.46 16 4 O -0.56 -12.27 9.79 -148.98 -1.46 -13.73 16 5 C 0.02 0.57 4.69 86.30 0.41 0.98 16 6 N -0.53 -16.05 4.64 -900.80 -4.18 -20.23 16 7 C 0.06 2.26 4.74 86.30 0.41 2.67 16 8 C -0.09 -3.67 5.25 30.59 0.16 -3.51 16 9 C 0.03 1.50 4.97 29.85 0.15 1.65 16 10 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 11 H 0.06 3.29 7.74 -2.92 -0.02 3.27 16 12 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 13 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 14 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 C 0.06 1.66 4.87 85.56 0.42 2.08 16 19 C -0.08 -1.76 5.11 -19.87 -0.10 -1.86 16 20 C -0.13 -2.91 9.68 22.27 0.22 -2.69 16 21 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 22 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 24 C -0.12 -2.31 7.94 22.27 0.18 -2.13 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 28 H 0.38 5.43 6.35 -73.95 -0.47 4.96 16 29 H 0.10 2.09 5.40 -2.39 -0.01 2.07 16 30 H 0.08 2.14 6.65 -2.39 -0.02 2.13 16 31 H 0.06 2.27 7.80 -2.39 -0.02 2.25 16 32 H 0.03 1.25 5.57 -2.38 -0.01 1.23 16 33 H 0.05 2.16 6.57 -2.39 -0.02 2.14 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.06 1.73 7.71 -2.39 -0.02 1.71 16 39 H 0.09 2.45 4.65 -2.35 -0.01 2.44 16 40 H 0.11 2.68 8.06 -2.91 -0.02 2.65 16 41 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.13 1.88 4.45 -2.91 -0.01 1.87 16 Total: -1.00 -67.87 341.36 1.17 -66.71 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.52 Total: 18.71 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.98 Total: -40.83 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -3.90 Total: -77.82 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.46 Total: -13.73 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.87 1.17 -66.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525486935.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.068 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds