Wall clock time and date at job start Mon Mar 30 2020 02:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42890 * 109.47780 * 2 1 4 4 C 1.35899 * 117.00476 * 180.02562 * 3 2 1 5 5 C 1.38747 * 120.05305 * 0.02562 * 4 3 2 6 6 C 1.38133 * 119.94213 * 179.97438 * 5 4 3 7 7 C 1.38284 * 120.05293 * 359.74669 * 6 5 4 8 8 C 1.38242 * 120.11261 * 0.51187 * 7 6 5 9 9 C 1.50709 * 119.97048 * 179.76367 * 8 7 6 10 10 N 1.46895 * 109.47333 * 266.59540 * 9 8 7 11 11 C 1.46896 * 111.00371 * 198.29347 * 10 9 8 12 12 C 1.50696 * 109.47282 * 157.71967 * 11 10 9 13 13 H 1.08002 * 120.00063 * 358.09065 * 12 11 10 14 14 C 1.37875 * 119.99862 * 178.09998 * 12 11 10 15 15 N 1.31515 * 120.00360 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47026 * 89.99406 * 16 14 12 18 18 H 1.48492 * 109.47228 * 209.99586 * 16 14 12 19 19 H 1.48498 * 109.46713 * 329.99896 * 16 14 12 20 20 C 1.46901 * 110.99751 * 74.33906 * 10 9 8 21 21 C 1.53004 * 109.47337 * 189.29734 * 20 10 9 22 22 C 1.53002 * 109.47189 * 69.29594 * 20 10 9 23 23 C 1.38162 * 120.05682 * 359.48697 * 8 7 6 24 24 H 1.08997 * 109.47128 * 60.00205 * 1 2 3 25 25 H 1.09003 * 109.47591 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47360 * 300.00463 * 1 2 3 27 27 H 1.09001 * 109.47360 * 239.99537 * 2 1 3 28 28 H 1.08999 * 109.46933 * 120.00302 * 2 1 3 29 29 H 1.07992 * 120.03116 * 359.96150 * 5 4 3 30 30 H 1.07999 * 119.97014 * 180.02562 * 6 5 4 31 31 H 1.08007 * 119.94323 * 180.26909 * 7 6 5 32 32 H 1.09000 * 109.46772 * 146.59328 * 9 8 7 33 33 H 1.08997 * 109.46812 * 26.59970 * 9 8 7 34 34 H 1.09002 * 109.46877 * 277.71944 * 11 10 9 35 35 H 1.09001 * 109.46714 * 37.71514 * 11 10 9 36 36 H 0.97002 * 120.00261 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.47281 * 309.29643 * 20 10 9 38 38 H 1.09000 * 109.46798 * 291.21850 * 21 20 10 39 39 H 1.09004 * 109.46432 * 51.21368 * 21 20 10 40 40 H 1.08997 * 109.47267 * 171.21402 * 21 20 10 41 41 H 1.08997 * 109.46957 * 187.03128 * 22 20 10 42 42 H 1.08994 * 109.46880 * 307.03161 * 22 20 10 43 43 H 1.08999 * 109.46755 * 67.03288 * 22 20 10 44 44 H 1.08003 * 120.02986 * 180.23569 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.3537 1.5251 -0.0005 5 6 4.1998 0.4256 -0.0016 6 6 5.5689 0.6092 -0.0027 7 6 6.0962 1.8875 -0.0080 8 6 5.2552 2.9847 -0.0016 9 6 5.8334 4.3765 -0.0020 10 7 5.9525 4.8577 1.3808 11 6 6.0908 6.3196 1.4194 12 6 5.6692 6.8284 2.7738 13 1 5.3031 6.1387 3.5198 14 6 5.7507 8.1746 3.0604 15 7 6.1968 9.0146 2.1521 16 14 5.2274 8.8056 4.7390 17 1 6.3937 8.7926 5.6582 18 1 4.7153 10.1933 4.6086 19 1 4.1575 7.9322 5.2845 20 6 7.0729 4.2045 2.0707 21 6 7.0260 4.5505 3.5604 22 6 8.3942 4.6944 1.4747 23 6 3.8851 2.8064 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 3.7885 -0.5729 -0.0014 30 1 6.2280 -0.2464 -0.0039 31 1 7.1670 2.0290 -0.0132 32 1 5.1775 5.0421 -0.5632 33 1 6.8189 4.3603 -0.4673 34 1 7.1305 6.5912 1.2367 35 1 5.4586 6.7647 0.6510 36 1 6.2545 9.9616 2.3539 37 1 6.9965 3.1243 1.9460 38 1 7.2578 5.6070 3.6954 39 1 6.0290 4.3445 3.9499 40 1 7.7577 3.9465 4.0969 41 1 9.2186 4.1205 1.8980 42 1 8.3764 4.5612 0.3931 43 1 8.5289 5.7504 1.7087 44 1 3.2285 3.6639 0.0007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535786538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:42 Heat of formation + Delta-G solvation = -11.951593 kcal Electronic energy + Delta-G solvation = -21849.675878 eV Core-core repulsion = 18767.372371 eV Total energy + Delta-G solvation = -3082.303507 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.04886 -38.29597 -36.83677 -32.66788 -32.07293 -32.03033 -29.96160 -29.38165 -27.40706 -26.21135 -24.78333 -23.31863 -22.46155 -22.03440 -20.63248 -18.64939 -17.60175 -16.26382 -16.13024 -15.95272 -15.76184 -15.24243 -14.65872 -14.14280 -13.79125 -13.51081 -13.37915 -13.20442 -13.11536 -12.72229 -12.40051 -12.16660 -11.87610 -11.68871 -11.53570 -11.30388 -11.21318 -11.01101 -10.85656 -10.79906 -10.66048 -10.61548 -10.45475 -10.22592 -10.10619 -9.36355 -9.04578 -8.56519 -8.33369 -7.99283 -7.13993 -5.95768 -3.93037 1.55943 1.67509 3.23246 3.35151 3.41950 3.46655 3.97020 4.48762 4.76361 4.78748 4.96682 5.04237 5.07079 5.12560 5.30079 5.36628 5.38707 5.57054 5.60232 5.61427 5.73795 5.78877 5.85759 5.89084 5.98125 6.11712 6.21473 6.28024 6.38208 6.50416 6.57450 6.60045 6.64933 6.75548 6.89645 7.00727 7.03134 7.26168 7.45514 7.51618 7.57513 7.91753 8.19705 8.28585 8.61910 9.12805 9.67518 11.14597 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.004419 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.557016 B = 6335.001263 C = 7214.876756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.317 6.317 4 C 0.125 3.875 5 C -0.219 4.219 6 C -0.085 4.085 7 C -0.153 4.153 8 C -0.018 4.018 9 C 0.084 3.916 10 N -0.523 5.523 11 C 0.184 3.816 12 C -0.495 4.495 13 H 0.070 0.930 14 C 0.052 3.948 15 N -0.902 5.902 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.087 3.913 21 C -0.139 4.139 22 C -0.185 4.185 23 C -0.129 4.129 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.008 0.992 35 H 0.023 0.977 36 H 0.259 0.741 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.028 0.972 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 -17.832 -5.314 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.231 6.231 4 C 0.080 3.920 5 C -0.238 4.238 6 C -0.104 4.104 7 C -0.172 4.172 8 C -0.019 4.019 9 C -0.044 4.044 10 N -0.247 5.247 11 C 0.060 3.940 12 C -0.533 4.533 13 H 0.088 0.912 14 C -0.149 4.149 15 N -0.542 5.542 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.022 4.022 21 C -0.196 4.196 22 C -0.244 4.244 23 C -0.148 4.148 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.026 0.974 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.102 -17.597 -5.086 18.771 hybrid contribution 0.586 0.373 0.457 0.832 sum -3.516 -17.224 -4.629 18.178 Atomic orbital electron populations 1.21771 0.92979 1.02558 1.03625 1.22704 0.95687 0.82473 1.01082 1.86078 1.19441 1.28708 1.88902 1.18968 0.81884 0.94194 0.96959 1.21084 0.94446 0.97503 1.10784 1.20808 0.94168 0.96989 0.98389 1.20968 0.99586 0.92072 1.04528 1.19788 0.92212 0.95691 0.94201 1.21131 0.98908 0.91602 0.92796 1.62370 1.41692 1.09601 1.11046 1.19914 0.96298 0.79925 0.97895 1.21339 1.41189 0.92015 0.98784 0.91191 1.24972 0.95939 0.96948 0.97000 1.69956 1.47519 1.03025 1.33732 0.86590 0.78879 0.78067 0.84482 1.20839 1.21438 1.19813 1.21500 0.88178 0.97144 0.95339 1.22046 1.00284 1.03490 0.93785 1.22478 0.98766 1.03123 1.00005 1.20331 0.94936 0.94595 1.04928 0.91559 0.90633 0.91435 0.92373 0.92267 0.86217 0.86358 0.86352 0.90369 0.94235 0.97389 0.95918 0.93121 0.92061 0.89492 0.92616 0.95281 0.93573 0.93630 0.90976 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.15 0.38 -0.83 16 2 C 0.06 0.56 5.46 37.15 0.20 0.76 16 3 O -0.32 -4.51 10.14 -19.42 -0.20 -4.70 16 4 C 0.12 1.88 6.69 -39.22 -0.26 1.62 16 5 C -0.22 -2.87 9.04 -39.43 -0.36 -3.22 16 6 C -0.09 -1.10 10.04 -39.60 -0.40 -1.50 16 7 C -0.15 -2.22 8.28 -39.56 -0.33 -2.55 16 8 C -0.02 -0.30 5.04 -104.64 -0.53 -0.83 16 9 C 0.08 1.52 5.02 -4.97 -0.02 1.50 16 10 N -0.52 -11.08 4.39 -229.52 -1.01 -12.09 16 11 C 0.18 4.64 4.52 -4.98 -0.02 4.62 16 12 C -0.49 -13.46 6.73 -34.44 -0.23 -13.70 16 13 H 0.07 1.91 5.94 -52.49 -0.31 1.59 16 14 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 15 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 16 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.09 1.67 2.82 -67.71 -0.19 1.48 16 21 C -0.14 -2.77 7.77 37.16 0.29 -2.48 16 22 C -0.19 -3.32 8.43 37.16 0.31 -3.00 16 23 C -0.13 -2.15 9.65 -39.43 -0.38 -2.53 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 28 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 29 H 0.12 1.26 6.30 -52.49 -0.33 0.92 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.12 1.59 7.90 -52.48 -0.41 1.17 16 32 H 0.08 1.45 7.57 -51.93 -0.39 1.05 16 33 H 0.04 0.68 5.99 -51.93 -0.31 0.37 16 34 H 0.01 0.22 5.48 -51.93 -0.28 -0.06 16 35 H 0.02 0.62 7.56 -51.93 -0.39 0.23 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.06 1.10 6.10 -51.93 -0.32 0.78 16 38 H 0.09 1.97 5.93 -51.93 -0.31 1.66 16 39 H 0.05 1.16 7.39 -51.93 -0.38 0.78 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.77 6.22 -51.93 -0.32 0.44 16 43 H 0.07 1.48 6.32 -51.93 -0.33 1.16 16 44 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -29.74 343.05 -8.94 -38.68 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.99 Total: 1.39 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -1.63 Total: -19.31 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.27 Total: -37.84 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.20 Total: -4.70 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.74 -8.94 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535786538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.727 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds