Wall clock time and date at job start Mon Mar 30 2020 02:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42890 * 109.47780 * 2 1 4 4 C 1.35899 * 117.00476 * 180.02562 * 3 2 1 5 5 C 1.38747 * 120.05305 * 0.02562 * 4 3 2 6 6 C 1.38133 * 119.94213 * 179.97438 * 5 4 3 7 7 C 1.38284 * 120.05293 * 359.74669 * 6 5 4 8 8 C 1.38242 * 120.11261 * 0.51187 * 7 6 5 9 9 C 1.50709 * 119.97048 * 179.76367 * 8 7 6 10 10 N 1.46895 * 109.47333 * 266.59540 * 9 8 7 11 11 C 1.46896 * 111.00371 * 198.29347 * 10 9 8 12 12 C 1.50696 * 109.47282 * 157.71967 * 11 10 9 13 13 H 1.08002 * 120.00063 * 358.09065 * 12 11 10 14 14 C 1.37875 * 119.99862 * 178.09998 * 12 11 10 15 15 N 1.31515 * 120.00360 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47026 * 89.99406 * 16 14 12 18 18 H 1.48492 * 109.47228 * 209.99586 * 16 14 12 19 19 H 1.48498 * 109.46713 * 329.99896 * 16 14 12 20 20 C 1.46901 * 110.99751 * 74.33906 * 10 9 8 21 21 C 1.53004 * 109.47337 * 189.29734 * 20 10 9 22 22 C 1.53002 * 109.47189 * 69.29594 * 20 10 9 23 23 C 1.38162 * 120.05682 * 359.48697 * 8 7 6 24 24 H 1.08997 * 109.47128 * 60.00205 * 1 2 3 25 25 H 1.09003 * 109.47591 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47360 * 300.00463 * 1 2 3 27 27 H 1.09001 * 109.47360 * 239.99537 * 2 1 3 28 28 H 1.08999 * 109.46933 * 120.00302 * 2 1 3 29 29 H 1.07992 * 120.03116 * 359.96150 * 5 4 3 30 30 H 1.07999 * 119.97014 * 180.02562 * 6 5 4 31 31 H 1.08007 * 119.94323 * 180.26909 * 7 6 5 32 32 H 1.09000 * 109.46772 * 146.59328 * 9 8 7 33 33 H 1.08997 * 109.46812 * 26.59970 * 9 8 7 34 34 H 1.09002 * 109.46877 * 277.71944 * 11 10 9 35 35 H 1.09001 * 109.46714 * 37.71514 * 11 10 9 36 36 H 0.97002 * 120.00261 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.47281 * 309.29643 * 20 10 9 38 38 H 1.09000 * 109.46798 * 291.21850 * 21 20 10 39 39 H 1.09004 * 109.46432 * 51.21368 * 21 20 10 40 40 H 1.08997 * 109.47267 * 171.21402 * 21 20 10 41 41 H 1.08997 * 109.46957 * 187.03128 * 22 20 10 42 42 H 1.08994 * 109.46880 * 307.03161 * 22 20 10 43 43 H 1.08999 * 109.46755 * 67.03288 * 22 20 10 44 44 H 1.08003 * 120.02986 * 180.23569 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.3537 1.5251 -0.0005 5 6 4.1998 0.4256 -0.0016 6 6 5.5689 0.6092 -0.0027 7 6 6.0962 1.8875 -0.0080 8 6 5.2552 2.9847 -0.0016 9 6 5.8334 4.3765 -0.0020 10 7 5.9525 4.8577 1.3808 11 6 6.0908 6.3196 1.4194 12 6 5.6692 6.8284 2.7738 13 1 5.3031 6.1387 3.5198 14 6 5.7507 8.1746 3.0604 15 7 6.1968 9.0146 2.1521 16 14 5.2274 8.8056 4.7390 17 1 6.3937 8.7926 5.6582 18 1 4.7153 10.1933 4.6086 19 1 4.1575 7.9322 5.2845 20 6 7.0729 4.2045 2.0707 21 6 7.0260 4.5505 3.5604 22 6 8.3942 4.6944 1.4747 23 6 3.8851 2.8064 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 3.7885 -0.5729 -0.0014 30 1 6.2280 -0.2464 -0.0039 31 1 7.1670 2.0290 -0.0132 32 1 5.1775 5.0421 -0.5632 33 1 6.8189 4.3603 -0.4673 34 1 7.1305 6.5912 1.2367 35 1 5.4586 6.7647 0.6510 36 1 6.2545 9.9616 2.3539 37 1 6.9965 3.1243 1.9460 38 1 7.2578 5.6070 3.6954 39 1 6.0290 4.3445 3.9499 40 1 7.7577 3.9465 4.0969 41 1 9.2186 4.1205 1.8980 42 1 8.3764 4.5612 0.3931 43 1 8.5289 5.7504 1.7087 44 1 3.2285 3.6639 0.0007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535786538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:41 Heat of formation + Delta-G solvation = -29.054766 kcal Electronic energy + Delta-G solvation = -21850.417528 eV Core-core repulsion = 18767.372371 eV Total energy + Delta-G solvation = -3083.045156 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14172 -39.70038 -38.11155 -34.71972 -33.43959 -32.84925 -31.50197 -30.47720 -29.17662 -27.79880 -26.23071 -24.36273 -24.06305 -23.38211 -21.74778 -20.21848 -18.80149 -18.28645 -17.12244 -16.99689 -16.91729 -16.75077 -16.53665 -15.66750 -15.14705 -14.83731 -14.77430 -14.30227 -14.18612 -14.09960 -13.73502 -13.37207 -13.15208 -13.07889 -12.90919 -12.81048 -12.68745 -12.54005 -12.49604 -12.34174 -12.24181 -11.98177 -11.83232 -11.64986 -11.56732 -11.16317 -10.99674 -10.49649 -9.73839 -9.09947 -8.84535 -8.10918 -6.15143 0.42174 0.56256 1.41394 1.42529 1.53542 2.31135 2.44280 2.81961 3.20387 3.50658 3.86621 3.95115 4.08428 4.12692 4.18033 4.23189 4.29680 4.38315 4.40275 4.47866 4.51791 4.60633 4.72248 4.76462 4.89763 4.94940 4.95516 5.01975 5.05093 5.13206 5.16824 5.22326 5.27196 5.32355 5.41639 5.52530 5.62099 5.73949 5.75953 5.80190 5.91816 6.19202 6.52121 6.55892 6.72294 6.97541 7.49607 8.98928 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.004419 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.557016 B = 6335.001263 C = 7214.876756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.341 6.341 4 C 0.117 3.883 5 C -0.212 4.212 6 C -0.076 4.076 7 C -0.157 4.157 8 C -0.032 4.032 9 C 0.088 3.912 10 N -0.534 5.534 11 C 0.200 3.800 12 C -0.499 4.499 13 H 0.067 0.933 14 C 0.000 4.000 15 N -0.938 5.938 16 Si 0.956 3.044 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.269 1.269 20 C 0.086 3.914 21 C -0.133 4.133 22 C -0.175 4.175 23 C -0.157 4.157 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.157 0.843 31 H 0.133 0.867 32 H 0.060 0.940 33 H 0.051 0.949 34 H -0.008 1.008 35 H -0.010 1.010 36 H 0.260 0.740 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -21.209 -4.687 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.255 6.255 4 C 0.072 3.928 5 C -0.231 4.231 6 C -0.093 4.093 7 C -0.176 4.176 8 C -0.033 4.033 9 C -0.040 4.040 10 N -0.258 5.258 11 C 0.074 3.926 12 C -0.537 4.537 13 H 0.085 0.915 14 C -0.197 4.197 15 N -0.580 5.580 16 Si 0.781 3.219 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.023 4.023 21 C -0.191 4.191 22 C -0.234 4.234 23 C -0.177 4.177 24 H 0.080 0.920 25 H 0.122 0.878 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.169 0.831 30 H 0.174 0.826 31 H 0.151 0.849 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.010 0.990 35 H 0.008 0.992 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.664 -21.001 -4.460 21.780 hybrid contribution 0.395 1.296 0.212 1.371 sum -3.269 -19.705 -4.247 20.421 Atomic orbital electron populations 1.21816 0.91781 1.04205 1.02929 1.23064 0.96742 0.80732 1.02375 1.86064 1.19113 1.31569 1.88799 1.19051 0.82740 0.94103 0.96873 1.21456 0.94448 0.98178 1.08974 1.21230 0.94573 0.97357 0.96179 1.21145 1.00025 0.92108 1.04308 1.19587 0.92397 0.95065 0.96241 1.21070 0.99224 0.92730 0.90972 1.62265 1.43131 1.07132 1.13267 1.19550 0.94329 0.82674 0.96009 1.21596 1.40483 0.92220 0.99414 0.91487 1.25769 0.96093 0.97255 1.00585 1.70081 1.48919 1.03261 1.35721 0.85579 0.78725 0.77325 0.80225 1.19824 1.21221 1.19348 1.21602 0.87995 0.98071 0.94590 1.21938 1.00330 1.01963 0.94855 1.22355 0.99069 1.01253 1.00707 1.20285 0.95079 0.95103 1.07184 0.92035 0.87758 0.92391 0.90676 0.91138 0.83072 0.82581 0.84903 0.92189 0.93139 0.99037 0.99157 0.93106 0.89750 0.92727 0.94046 0.92015 0.90565 0.92745 0.94378 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.05 0.80 5.46 71.98 0.39 1.19 16 3 O -0.34 -9.47 10.14 -92.41 -0.94 -10.41 16 4 C 0.12 3.43 6.69 22.51 0.15 3.58 16 5 C -0.21 -4.83 9.04 22.37 0.20 -4.63 16 6 C -0.08 -1.64 10.04 22.26 0.22 -1.41 16 7 C -0.16 -4.15 8.28 22.28 0.18 -3.97 16 8 C -0.03 -1.06 5.04 -19.88 -0.10 -1.16 16 9 C 0.09 3.29 5.02 85.56 0.43 3.72 16 10 N -0.53 -23.24 4.39 -880.06 -3.86 -27.10 16 11 C 0.20 10.60 4.52 85.56 0.39 10.99 16 12 C -0.50 -28.10 6.73 25.60 0.17 -27.92 16 13 H 0.07 3.75 5.94 -2.91 -0.02 3.73 16 14 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 15 N -0.94 -56.93 13.29 21.45 0.28 -56.64 16 16 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 C 0.09 3.21 2.82 44.92 0.13 3.34 16 21 C -0.13 -5.24 7.77 71.98 0.56 -4.68 16 22 C -0.18 -6.11 8.43 71.98 0.61 -5.50 16 23 C -0.16 -5.38 9.65 22.37 0.22 -5.16 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.06 7.66 -2.39 -0.02 1.04 16 28 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 29 H 0.15 2.45 6.30 -2.91 -0.02 2.43 16 30 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.13 3.09 7.90 -2.91 -0.02 3.06 16 32 H 0.06 2.40 7.57 -2.39 -0.02 2.38 16 33 H 0.05 1.75 5.99 -2.39 -0.01 1.74 16 34 H -0.01 -0.45 5.48 -2.39 -0.01 -0.46 16 35 H -0.01 -0.57 7.56 -2.39 -0.02 -0.58 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.08 2.81 6.10 -2.38 -0.01 2.80 16 38 H 0.05 2.50 5.93 -2.39 -0.01 2.48 16 39 H 0.04 1.71 7.39 -2.39 -0.02 1.69 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.77 6.22 -2.39 -0.01 1.76 16 43 H 0.04 1.58 6.32 -2.39 -0.02 1.57 16 44 H 0.11 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -66.92 343.05 3.24 -63.68 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.97 Total: 15.81 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 4.75 Total: -32.56 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -3.57 Total: -83.74 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.94 Total: -10.41 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -66.92 3.24 -63.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535786538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.624 kcal (2) G-P(sol) polarization free energy of solvation -66.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds