Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47191 * 2 1 4 4 C 1.50703 * 109.47141 * 119.99486 * 2 1 3 5 5 C 1.38271 * 119.94122 * 120.00177 * 4 2 1 6 6 C 1.38142 * 120.05233 * 179.70497 * 5 4 2 7 7 C 1.38737 * 119.94617 * 0.27327 * 6 5 4 8 8 O 1.35897 * 120.05414 * 180.02562 * 7 6 5 9 9 C 1.42903 * 117.00344 * 354.62801 * 8 7 6 10 10 H 1.08993 * 109.46642 * 324.81285 * 9 8 7 11 11 C 1.53000 * 109.47084 * 84.81334 * 9 8 7 12 12 C 1.53001 * 109.47145 * 204.81210 * 9 8 7 13 13 N 1.46902 * 109.46776 * 64.99956 * 12 9 8 14 14 C 1.46901 * 110.99972 * 179.97438 * 13 12 9 15 15 C 1.50693 * 109.47370 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00358 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99708 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47185 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47215 * 119.99805 * 19 17 15 22 22 H 1.48501 * 109.47396 * 239.99797 * 19 17 15 23 23 C 1.38730 * 119.88653 * 0.02562 * 7 6 5 24 24 C 1.38140 * 119.94716 * 359.97438 * 23 7 6 25 25 H 1.08992 * 109.47219 * 60.00608 * 1 2 3 26 26 H 1.08999 * 109.46826 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47096 * 299.99920 * 1 2 3 28 28 H 1.09002 * 109.47298 * 239.99713 * 2 1 3 29 29 H 1.09000 * 109.47729 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46974 * 299.99723 * 3 2 1 31 31 H 1.09002 * 109.47234 * 59.99674 * 3 2 1 32 32 H 1.07994 * 119.97166 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.03011 * 180.29766 * 6 5 4 34 34 H 1.09001 * 109.47123 * 179.97438 * 11 9 8 35 35 H 1.09005 * 109.46870 * 300.00178 * 11 9 8 36 36 H 1.09004 * 109.47006 * 60.00208 * 11 9 8 37 37 H 1.08994 * 109.46822 * 184.99515 * 12 9 8 38 38 H 1.09000 * 109.47420 * 305.00373 * 12 9 8 39 39 H 1.00894 * 111.00102 * 303.95061 * 13 12 9 40 40 H 1.08997 * 109.47273 * 300.00585 * 14 13 12 41 41 H 1.09004 * 109.46860 * 60.00076 * 14 13 12 42 42 H 0.96989 * 119.99744 * 179.97438 * 18 17 15 43 43 H 1.08004 * 120.02538 * 180.02562 * 23 7 6 44 44 H 1.08000 * 119.97409 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.8272 -1.8344 1.1024 6 6 3.2940 -2.4837 2.2288 7 6 2.9599 -2.0104 3.4894 8 8 3.4183 -2.6472 4.5990 9 6 4.1402 -3.8638 4.3972 10 1 3.7160 -4.4016 3.5494 11 6 5.6096 -3.5441 4.1150 12 6 4.0393 -4.7312 5.6536 13 7 2.6423 -5.1374 5.8571 14 6 2.5068 -5.9740 7.0570 15 6 1.0637 -6.3708 7.2324 16 1 0.3214 -6.0355 6.5231 17 6 0.6908 -7.1620 8.2982 18 7 1.5948 -7.5708 9.1616 19 14 -1.0982 -7.6534 8.5160 20 1 -1.9093 -7.0690 7.4178 21 1 -1.2128 -9.1335 8.4815 22 1 -1.5948 -7.1487 9.8214 23 6 2.1571 -0.8860 3.6153 24 6 1.6929 -0.2402 2.4858 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 3.0869 -2.2025 0.1209 33 1 3.9188 -3.3589 2.1282 34 1 6.1604 -4.4722 3.9615 35 1 5.6815 -2.9262 3.2199 36 1 6.0338 -3.0063 4.9629 37 1 4.6617 -5.6179 5.5338 38 1 4.3813 -4.1610 6.5173 39 1 2.0353 -4.3329 5.9064 40 1 3.1186 -6.8693 6.9467 41 1 2.8384 -5.4127 7.9306 42 1 1.3325 -8.1271 9.9116 43 1 1.8960 -0.5154 4.5955 44 1 1.0682 0.6354 2.5833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564560795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = -36.811054 kcal Electronic energy + Delta-G solvation = -21038.419457 eV Core-core repulsion = 17955.037963 eV Total energy + Delta-G solvation = -3083.381494 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28589 -38.37128 -35.58699 -34.58973 -32.76955 -31.55951 -30.70265 -28.82221 -27.33364 -27.18947 -24.46077 -23.54964 -22.60173 -21.37367 -21.08322 -19.76739 -18.19591 -16.56247 -16.01698 -15.70692 -15.22718 -14.95424 -14.60604 -14.44227 -14.09379 -13.81680 -13.67821 -13.28460 -13.17432 -12.96093 -12.74361 -12.50581 -12.38714 -12.19301 -11.94519 -11.52151 -11.43995 -11.34830 -11.15902 -10.92746 -10.89309 -10.77580 -10.69227 -10.46541 -10.36676 -9.85898 -9.15096 -8.95716 -8.47521 -7.95585 -7.31035 -6.02300 -4.03877 1.37822 1.47890 3.32238 3.37828 3.39216 3.45105 3.79141 4.43917 4.55841 4.64421 4.82568 4.90153 4.99541 5.02138 5.08383 5.23603 5.30896 5.33869 5.34891 5.41329 5.46823 5.57405 5.62633 5.64361 5.71989 5.75066 5.78026 5.80281 5.99983 6.04243 6.05963 6.10937 6.17870 6.26344 6.38365 6.46055 6.63866 6.85211 7.23377 7.42946 7.62478 7.79344 8.12554 8.39934 8.61374 9.05659 9.60993 11.09036 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.003380 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.430018 B = 8282.505717 C = 9344.425894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C -0.144 4.144 4 C -0.125 4.125 5 C -0.079 4.079 6 C -0.207 4.207 7 C 0.141 3.859 8 O -0.307 6.307 9 C 0.083 3.917 10 H 0.081 0.919 11 C -0.178 4.178 12 C 0.064 3.936 13 N -0.691 5.691 14 C 0.193 3.807 15 C -0.512 4.512 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.154 4.154 24 C -0.076 4.076 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.030 0.970 39 H 0.335 0.665 40 H 0.028 0.972 41 H -0.013 1.013 42 H 0.261 0.739 43 H 0.129 0.871 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 15.872 -17.780 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.125 4.125 5 C -0.097 4.097 6 C -0.226 4.226 7 C 0.095 3.905 8 O -0.220 6.220 9 C 0.027 3.973 10 H 0.099 0.901 11 C -0.236 4.236 12 C -0.066 4.066 13 N -0.322 5.322 14 C 0.067 3.933 15 C -0.551 4.551 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.172 4.172 24 C -0.094 4.094 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.152 0.848 40 H 0.046 0.954 41 H 0.005 0.995 42 H 0.070 0.930 43 H 0.147 0.853 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.339 15.259 -17.825 23.862 hybrid contribution -0.649 0.073 0.860 1.080 sum 3.690 15.332 -16.965 23.163 Atomic orbital electron populations 1.21869 0.94561 1.02116 1.01681 1.20019 0.95768 0.95744 0.95348 1.21864 1.01141 0.95402 1.01690 1.19677 1.00947 0.97348 0.94553 1.20798 0.96431 0.94566 0.97873 1.21308 1.06130 1.03090 0.92067 1.19044 0.93105 0.92400 0.85925 1.86134 1.68569 1.37368 1.29962 1.22665 0.90777 0.83196 1.00641 0.90107 1.22349 0.96103 1.02656 1.02448 1.21982 0.94027 0.96528 0.94065 1.60705 1.03612 1.23659 1.44191 1.19561 0.97482 0.91822 0.84459 1.21223 0.93353 1.31026 1.09491 0.91907 1.24997 0.97818 0.96083 0.95743 1.69974 1.33248 1.36224 1.14395 0.86422 0.84747 0.78203 0.77939 1.19616 1.20994 1.21064 1.20450 1.00795 0.96362 0.99634 1.20708 0.98491 0.99012 0.91191 0.92676 0.92441 0.92464 0.90823 0.92651 0.92670 0.92505 0.86262 0.85287 0.90862 0.92103 0.91572 0.89906 0.95227 0.84802 0.95432 0.99497 0.92975 0.85341 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.00 37.16 0.33 -0.82 16 2 C -0.05 -0.43 3.09 -91.77 -0.28 -0.71 16 3 C -0.14 -1.06 9.01 37.16 0.33 -0.73 16 4 C -0.12 -1.35 4.78 -104.60 -0.50 -1.85 16 5 C -0.08 -0.89 9.66 -39.60 -0.38 -1.27 16 6 C -0.21 -2.67 8.24 -39.43 -0.32 -2.99 16 7 C 0.14 2.06 6.60 -39.22 -0.26 1.80 16 8 O -0.31 -4.95 9.32 -19.42 -0.18 -5.13 16 9 C 0.08 1.24 2.46 -26.73 -0.07 1.18 16 10 H 0.08 1.21 6.32 -51.93 -0.33 0.88 16 11 C -0.18 -2.09 9.17 37.16 0.34 -1.75 16 12 C 0.06 1.16 5.39 -3.82 -0.02 1.14 16 13 N -0.69 -15.44 6.49 -115.06 -0.75 -16.18 16 14 C 0.19 5.20 5.44 -4.98 -0.03 5.17 16 15 C -0.51 -14.90 9.32 -34.44 -0.32 -15.22 16 16 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 19 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.15 -2.05 9.99 -39.44 -0.39 -2.44 16 24 C -0.08 -0.86 8.70 -39.61 -0.34 -1.21 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 28 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.06 0.42 7.40 -51.93 -0.38 0.03 16 32 H 0.12 1.10 7.94 -52.49 -0.42 0.68 16 33 H 0.13 1.53 5.43 -52.49 -0.28 1.25 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.66 6.90 -51.93 -0.36 0.30 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.34 7.50 8.28 -39.30 -0.33 7.18 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 41 H -0.01 -0.36 8.14 -51.93 -0.42 -0.79 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.12 1.14 7.09 -52.49 -0.37 0.77 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -31.07 356.47 -9.31 -40.38 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.46 Total: 3.25 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.01 Total: -18.22 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.01 Total: -42.70 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.18 Total: -5.13 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.07 -9.31 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564560795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.568 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds