Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47191 * 2 1 4 4 C 1.50703 * 109.47141 * 119.99486 * 2 1 3 5 5 C 1.38271 * 119.94122 * 120.00177 * 4 2 1 6 6 C 1.38142 * 120.05233 * 179.70497 * 5 4 2 7 7 C 1.38737 * 119.94617 * 0.27327 * 6 5 4 8 8 O 1.35897 * 120.05414 * 180.02562 * 7 6 5 9 9 C 1.42903 * 117.00344 * 354.62801 * 8 7 6 10 10 H 1.08993 * 109.46642 * 324.81285 * 9 8 7 11 11 C 1.53000 * 109.47084 * 84.81334 * 9 8 7 12 12 C 1.53001 * 109.47145 * 204.81210 * 9 8 7 13 13 N 1.46902 * 109.46776 * 64.99956 * 12 9 8 14 14 C 1.46901 * 110.99972 * 179.97438 * 13 12 9 15 15 C 1.50693 * 109.47370 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00358 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99708 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47185 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47215 * 119.99805 * 19 17 15 22 22 H 1.48501 * 109.47396 * 239.99797 * 19 17 15 23 23 C 1.38730 * 119.88653 * 0.02562 * 7 6 5 24 24 C 1.38140 * 119.94716 * 359.97438 * 23 7 6 25 25 H 1.08992 * 109.47219 * 60.00608 * 1 2 3 26 26 H 1.08999 * 109.46826 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47096 * 299.99920 * 1 2 3 28 28 H 1.09002 * 109.47298 * 239.99713 * 2 1 3 29 29 H 1.09000 * 109.47729 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46974 * 299.99723 * 3 2 1 31 31 H 1.09002 * 109.47234 * 59.99674 * 3 2 1 32 32 H 1.07994 * 119.97166 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.03011 * 180.29766 * 6 5 4 34 34 H 1.09001 * 109.47123 * 179.97438 * 11 9 8 35 35 H 1.09005 * 109.46870 * 300.00178 * 11 9 8 36 36 H 1.09004 * 109.47006 * 60.00208 * 11 9 8 37 37 H 1.08994 * 109.46822 * 184.99515 * 12 9 8 38 38 H 1.09000 * 109.47420 * 305.00373 * 12 9 8 39 39 H 1.00894 * 111.00102 * 303.95061 * 13 12 9 40 40 H 1.08997 * 109.47273 * 300.00585 * 14 13 12 41 41 H 1.09004 * 109.46860 * 60.00076 * 14 13 12 42 42 H 0.96989 * 119.99744 * 179.97438 * 18 17 15 43 43 H 1.08004 * 120.02538 * 180.02562 * 23 7 6 44 44 H 1.08000 * 119.97409 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.8272 -1.8344 1.1024 6 6 3.2940 -2.4837 2.2288 7 6 2.9599 -2.0104 3.4894 8 8 3.4183 -2.6472 4.5990 9 6 4.1402 -3.8638 4.3972 10 1 3.7160 -4.4016 3.5494 11 6 5.6096 -3.5441 4.1150 12 6 4.0393 -4.7312 5.6536 13 7 2.6423 -5.1374 5.8571 14 6 2.5068 -5.9740 7.0570 15 6 1.0637 -6.3708 7.2324 16 1 0.3214 -6.0355 6.5231 17 6 0.6908 -7.1620 8.2982 18 7 1.5948 -7.5708 9.1616 19 14 -1.0982 -7.6534 8.5160 20 1 -1.9093 -7.0690 7.4178 21 1 -1.2128 -9.1335 8.4815 22 1 -1.5948 -7.1487 9.8214 23 6 2.1571 -0.8860 3.6153 24 6 1.6929 -0.2402 2.4858 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 3.0869 -2.2025 0.1209 33 1 3.9188 -3.3589 2.1282 34 1 6.1604 -4.4722 3.9615 35 1 5.6815 -2.9262 3.2199 36 1 6.0338 -3.0063 4.9629 37 1 4.6617 -5.6179 5.5338 38 1 4.3813 -4.1610 6.5173 39 1 2.0353 -4.3329 5.9064 40 1 3.1186 -6.8693 6.9467 41 1 2.8384 -5.4127 7.9306 42 1 1.3325 -8.1271 9.9116 43 1 1.8960 -0.5154 4.5955 44 1 1.0682 0.6354 2.5833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564560795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = -54.875974 kcal Electronic energy + Delta-G solvation = -21039.202811 eV Core-core repulsion = 17955.037963 eV Total energy + Delta-G solvation = -3084.164848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31518 -39.37189 -37.13039 -35.65237 -34.65540 -32.96907 -31.74026 -29.72789 -29.07326 -27.91602 -26.06818 -24.60038 -23.54098 -23.35793 -22.19620 -20.65713 -19.27698 -18.64936 -17.10167 -16.73672 -16.68498 -16.46168 -16.10649 -15.60394 -15.19922 -14.95502 -14.72884 -14.37624 -14.32243 -14.18215 -13.91043 -13.63658 -13.33749 -13.29793 -13.12023 -13.03986 -12.93543 -12.69873 -12.59837 -12.23496 -12.09791 -11.96457 -11.73572 -11.65661 -11.55064 -11.39068 -11.22043 -10.69481 -9.89532 -9.21708 -8.93771 -8.25567 -6.36875 0.44086 0.52301 1.39509 1.40130 1.54535 2.27617 2.38246 2.85004 3.07631 3.40640 3.79253 3.85455 3.90926 3.99900 4.08174 4.21502 4.23690 4.39536 4.43824 4.48370 4.59252 4.63059 4.65450 4.71732 4.85702 4.86573 4.94676 5.00428 5.04204 5.05383 5.11155 5.18644 5.20444 5.22302 5.37702 5.45095 5.47314 5.50331 5.57837 5.77982 5.93452 5.97570 6.36913 6.55372 6.63570 6.82945 7.33963 8.86469 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.003380 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.430018 B = 8282.505717 C = 9344.425894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.122 4.122 5 C -0.083 4.083 6 C -0.213 4.213 7 C 0.112 3.888 8 O -0.330 6.330 9 C 0.091 3.909 10 H 0.081 0.919 11 C -0.169 4.169 12 C 0.062 3.938 13 N -0.689 5.689 14 C 0.208 3.792 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.975 3.025 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.276 1.276 23 C -0.171 4.171 24 C -0.077 4.077 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.022 0.978 39 H 0.334 0.666 40 H 0.006 0.994 41 H -0.040 1.040 42 H 0.266 0.734 43 H 0.125 0.875 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 16.628 -19.786 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.122 4.122 5 C -0.101 4.101 6 C -0.232 4.232 7 C 0.067 3.933 8 O -0.245 6.245 9 C 0.035 3.965 10 H 0.099 0.901 11 C -0.226 4.226 12 C -0.067 4.067 13 N -0.319 5.319 14 C 0.080 3.920 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.799 3.201 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.190 4.190 24 C -0.095 4.095 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.040 0.960 39 H 0.151 0.849 40 H 0.024 0.976 41 H -0.023 1.023 42 H 0.075 0.925 43 H 0.143 0.857 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.544 16.031 -19.853 25.763 hybrid contribution -0.376 -0.098 1.428 1.480 sum 3.168 15.934 -18.425 24.564 Atomic orbital electron populations 1.21869 0.94155 1.01711 1.02462 1.20081 0.96028 0.96236 0.94409 1.21851 1.00934 0.94697 1.02444 1.20042 0.99853 0.96960 0.95320 1.21134 0.96037 0.94504 0.98456 1.21459 1.06347 1.03465 0.91887 1.19294 0.94574 0.93293 0.86125 1.86076 1.69370 1.37700 1.31315 1.22535 0.92815 0.82760 0.98395 0.90099 1.22285 0.93712 1.03760 1.02869 1.22104 0.91438 0.97544 0.95645 1.60600 1.06265 1.23533 1.41505 1.19224 0.96312 0.91285 0.85158 1.21548 0.94233 1.31752 1.10017 0.92075 1.25967 1.02871 0.95702 0.95133 1.70090 1.35692 1.36634 1.14926 0.85259 0.78598 0.78078 0.78213 1.18833 1.20055 1.20141 1.20637 1.01293 0.96661 1.00367 1.20952 0.98288 0.99353 0.90872 0.91072 0.93426 0.92587 0.89800 0.92976 0.91167 0.92569 0.83906 0.84588 0.89087 0.90814 0.91824 0.89110 0.95975 0.84936 0.97592 1.02266 0.92492 0.85686 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.00 71.98 0.65 -1.33 16 2 C -0.05 -0.70 3.09 -11.54 -0.04 -0.74 16 3 C -0.14 -1.73 9.01 71.98 0.65 -1.08 16 4 C -0.12 -2.40 4.78 -19.85 -0.09 -2.50 16 5 C -0.08 -1.74 9.66 22.25 0.22 -1.53 16 6 C -0.21 -5.29 8.24 22.37 0.18 -5.11 16 7 C 0.11 3.28 6.60 22.51 0.15 3.43 16 8 O -0.33 -10.85 9.32 -92.39 -0.86 -11.71 16 9 C 0.09 2.71 2.46 30.59 0.08 2.78 16 10 H 0.08 2.39 6.32 -2.39 -0.02 2.37 16 11 C -0.17 -3.78 9.17 71.98 0.66 -3.12 16 12 C 0.06 2.29 5.39 86.30 0.46 2.76 16 13 N -0.69 -31.67 6.49 -517.94 -3.36 -35.03 16 14 C 0.21 11.61 5.44 85.55 0.47 12.08 16 15 C -0.54 -31.84 9.32 25.60 0.24 -31.60 16 16 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 19 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.17 -4.57 9.99 22.36 0.22 -4.35 16 24 C -0.08 -1.66 8.70 22.25 0.19 -1.46 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.77 7.37 -2.39 -0.02 0.75 16 28 H 0.08 1.05 7.87 -2.39 -0.02 1.03 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.69 7.40 -2.39 -0.02 0.67 16 32 H 0.14 2.24 7.94 -2.91 -0.02 2.21 16 33 H 0.14 3.07 5.43 -2.91 -0.02 3.06 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.48 6.90 -2.38 -0.02 1.46 16 36 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.33 15.46 8.28 -89.70 -0.74 14.71 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H -0.04 -2.42 8.14 -2.39 -0.02 -2.44 16 42 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 43 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.14 2.42 7.09 -2.91 -0.02 2.40 16 Total: -1.00 -67.35 356.47 2.81 -64.54 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.22 Total: 23.21 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 4.50 Total: -31.22 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -3.08 Total: -92.12 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.86 Total: -11.71 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.35 2.81 -64.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564560795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.666 kcal (2) G-P(sol) polarization free energy of solvation -67.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds