Wall clock time and date at job start Mon Mar 30 2020 02:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.46713 * 2 1 4 4 C 1.46894 * 111.00406 * 287.92751 * 3 2 1 5 5 C 1.52999 * 109.47726 * 158.12342 * 4 3 2 6 6 O 1.42903 * 109.46746 * 67.67943 * 5 4 3 7 7 C 1.42900 * 113.99927 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47221 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00062 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99783 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00415 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99587 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47408 * 90.00064 * 12 10 8 14 14 H 1.48505 * 109.47191 * 209.99584 * 12 10 8 15 15 H 1.48494 * 109.47364 * 329.99628 * 12 10 8 16 16 C 1.46901 * 111.00142 * 163.97305 * 3 2 1 17 17 C 1.50697 * 109.47115 * 290.45548 * 16 3 2 18 18 C 1.38239 * 120.00399 * 89.99800 * 17 16 3 19 19 C 1.38228 * 120.00339 * 179.72679 * 18 17 16 20 20 C 1.38244 * 119.99928 * 0.25307 * 19 18 17 21 21 C 1.50699 * 119.99818 * 180.02562 * 20 19 18 22 22 C 1.38237 * 119.99744 * 0.02562 * 20 19 18 23 23 C 1.38235 * 120.00040 * 359.95922 * 22 20 19 24 24 H 1.09007 * 109.46974 * 187.57202 * 1 2 3 25 25 H 1.09000 * 109.47206 * 307.57548 * 1 2 3 26 26 H 1.08997 * 109.47468 * 67.58110 * 1 2 3 27 27 H 1.08999 * 109.47500 * 240.00509 * 2 1 3 28 28 H 1.09004 * 109.47575 * 119.99821 * 2 1 3 29 29 H 1.09003 * 109.47321 * 278.12724 * 4 3 2 30 30 H 1.09004 * 109.47162 * 38.12403 * 4 3 2 31 31 H 1.08993 * 109.47487 * 187.68127 * 5 4 3 32 32 H 1.09003 * 109.46832 * 307.68245 * 5 4 3 33 33 H 1.09001 * 109.47493 * 300.00223 * 7 6 5 34 34 H 1.09006 * 109.47196 * 60.00184 * 7 6 5 35 35 H 0.96999 * 120.00323 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.47474 * 170.44893 * 16 3 2 37 37 H 1.09006 * 109.46786 * 50.45127 * 16 3 2 38 38 H 1.07999 * 119.99931 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.00183 * 180.27809 * 19 18 17 40 40 H 1.09002 * 109.47479 * 90.00162 * 21 20 19 41 41 H 1.08998 * 109.46982 * 210.00074 * 21 20 19 42 42 H 1.08997 * 109.47250 * 330.00060 * 21 20 19 43 43 H 1.07997 * 119.99346 * 179.97438 * 22 20 19 44 44 H 1.07994 * 119.99741 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7970 2.0221 -1.3047 5 6 1.7933 3.5428 -1.1359 6 8 3.1043 3.9855 -0.7790 7 6 3.2107 5.3987 -0.5957 8 6 4.6279 5.7519 -0.2246 9 1 5.3728 4.9748 -0.1369 10 6 4.9733 7.0670 0.0042 11 7 4.0662 8.0132 -0.1021 12 14 6.7299 7.5046 0.4650 13 1 7.5129 7.7729 -0.7680 14 1 6.7291 8.7159 1.3241 15 1 7.3440 6.3732 1.2050 16 6 3.4378 1.4421 0.3786 17 6 3.5830 1.0901 1.8367 18 6 3.7738 -0.2260 2.2144 19 6 3.9126 -0.5482 3.5514 20 6 3.8555 0.4451 4.5113 21 6 4.0074 0.0939 5.9689 22 6 3.6589 1.7604 4.1340 23 6 3.5204 2.0825 2.7969 24 1 -0.3633 -1.0188 0.1354 25 1 -0.3633 0.6267 0.8145 26 1 -0.3634 0.3919 -0.9499 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.5943 1.7346 -1.9902 30 1 0.8372 1.6990 -1.7079 31 1 1.4941 4.0117 -2.0733 32 1 1.0900 3.8194 -0.3505 33 1 2.9407 5.9066 -1.5217 34 1 2.5368 5.7135 0.2011 35 1 4.3093 8.9384 0.0585 36 1 3.8192 2.4488 0.2081 37 1 4.0037 0.7322 -0.2246 38 1 3.8183 -1.0019 1.4646 39 1 4.0661 -1.5758 3.8462 40 1 5.0606 0.1397 6.2459 41 1 3.4414 0.8020 6.5741 42 1 3.6301 -0.9141 6.1410 43 1 3.6139 2.5362 4.8840 44 1 3.3673 3.1101 2.5022 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566902922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:38 Heat of formation + Delta-G solvation = -31.923305 kcal Electronic energy + Delta-G solvation = -21775.705944 eV Core-core repulsion = 18692.536399 eV Total energy + Delta-G solvation = -3083.169545 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.44103 -37.78488 -36.10676 -33.10306 -32.70690 -30.99437 -30.58586 -29.37036 -27.31691 -26.37731 -23.87092 -22.78367 -22.30653 -22.05151 -20.71053 -20.08736 -16.43597 -16.27119 -15.64828 -15.51081 -15.19319 -15.06345 -14.74503 -14.46078 -14.12105 -13.74003 -13.56584 -13.25403 -13.13795 -12.85069 -12.42388 -12.17868 -11.97154 -11.85701 -11.77181 -11.50233 -11.33953 -11.09098 -10.93743 -10.86670 -10.71005 -10.69191 -10.58023 -10.27638 -9.88417 -9.06806 -8.77967 -8.63709 -8.30726 -8.13194 -7.98105 -6.09706 -4.11313 1.55891 1.68143 3.30613 3.36074 3.41180 3.87466 4.34890 4.39160 4.90535 4.96719 4.99888 5.15999 5.18592 5.26206 5.27068 5.29160 5.36504 5.56335 5.59111 5.59889 5.66591 5.74360 5.79253 5.84616 5.88258 5.99462 6.05059 6.07882 6.15655 6.25360 6.30852 6.37416 6.41945 6.64704 6.70145 6.82764 7.01769 7.15316 7.28550 7.37930 7.44771 7.48296 7.80196 8.17516 8.59904 9.02357 9.53705 11.01708 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.005454 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.791680 B = 5132.691542 C = 6898.857850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.525 5.525 4 C 0.058 3.942 5 C 0.068 3.932 6 O -0.394 6.394 7 C 0.196 3.804 8 C -0.512 4.512 9 H 0.065 0.935 10 C 0.058 3.942 11 N -0.898 5.898 12 Si 0.904 3.096 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.271 1.271 16 C 0.079 3.921 17 C -0.069 4.069 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.084 4.084 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.263 0.737 36 H 0.128 0.872 37 H 0.032 0.968 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.119 0.881 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 -17.134 5.068 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 N -0.250 5.250 4 C -0.069 4.069 5 C -0.010 4.010 6 O -0.314 6.314 7 C 0.122 3.878 8 C -0.551 4.551 9 H 0.083 0.917 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.196 1.196 16 C -0.048 4.048 17 C -0.069 4.069 18 C -0.136 4.136 19 C -0.147 4.147 20 C -0.097 4.097 21 C -0.168 4.168 22 C -0.140 4.140 23 C -0.103 4.103 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.050 0.950 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.137 0.863 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.537 -16.795 5.445 18.229 hybrid contribution 1.053 0.117 -0.463 1.157 sum -3.484 -16.679 4.981 17.752 Atomic orbital electron populations 1.21773 0.95294 1.01041 1.02188 1.22212 0.95919 0.89972 1.00593 1.61990 1.18077 1.15932 1.28983 1.22199 1.00582 0.94440 0.89724 1.22275 0.87777 0.92698 0.98288 1.87726 1.26883 1.26840 1.89979 1.20174 0.97461 0.75142 0.95055 1.21036 0.94490 0.92654 1.46891 0.91681 1.24923 0.97986 0.95980 0.95475 1.69960 1.33538 1.00585 1.49619 0.86398 0.84024 0.77986 0.78471 1.20535 1.21108 1.19603 1.21489 0.87869 1.04890 0.90511 1.19843 0.98541 0.92812 0.95751 1.21003 1.01070 0.95840 0.95720 1.20863 1.02499 0.98475 0.92822 1.19845 1.00687 0.93642 0.95514 1.20748 1.01926 1.01631 0.92456 1.21062 1.01082 0.95534 0.96341 1.21239 0.96721 1.00191 0.92111 0.92874 0.91749 0.93050 0.95477 0.90505 0.94094 0.90332 0.94358 0.93573 0.97938 0.97676 0.92704 0.85445 0.95028 0.86869 0.86799 0.91539 0.91764 0.92005 0.86330 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.85 37.16 0.37 -1.25 16 2 C 0.04 0.52 5.52 -3.82 -0.02 0.50 16 3 N -0.53 -8.09 4.34 -236.07 -1.02 -9.11 16 4 C 0.06 0.89 5.37 -3.83 -0.02 0.87 16 5 C 0.07 1.25 6.25 37.16 0.23 1.48 16 6 O -0.39 -9.10 7.53 -35.23 -0.27 -9.37 16 7 C 0.20 5.27 5.69 36.01 0.20 5.47 16 8 C -0.51 -14.77 9.43 -34.44 -0.32 -15.10 16 9 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 12 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 C 0.08 1.31 4.92 -4.98 -0.02 1.29 16 17 C -0.07 -1.09 5.03 -104.62 -0.53 -1.62 16 18 C -0.12 -1.60 8.00 -39.58 -0.32 -1.92 16 19 C -0.13 -1.62 9.70 -39.58 -0.38 -2.01 16 20 C -0.10 -1.25 5.88 -104.62 -0.62 -1.86 16 21 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 22 C -0.12 -1.78 9.70 -39.58 -0.38 -2.16 16 23 C -0.08 -1.40 9.70 -39.58 -0.38 -1.78 16 24 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.54 6.79 -51.93 -0.35 0.19 16 27 H 0.03 0.32 8.05 -51.93 -0.42 -0.09 16 28 H 0.08 0.97 5.25 -51.93 -0.27 0.70 16 29 H 0.04 0.64 7.97 -51.93 -0.41 0.22 16 30 H 0.08 1.01 6.34 -51.93 -0.33 0.68 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.13 2.56 5.09 -51.93 -0.26 2.30 16 37 H 0.03 0.50 8.03 -51.93 -0.42 0.08 16 38 H 0.11 1.34 7.62 -52.49 -0.40 0.94 16 39 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 42 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 44 H 0.13 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -30.27 355.12 -9.64 -39.90 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.48 Total: -0.26 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.93 Total: -17.26 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.29 Total: -35.11 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.27 Total: -9.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.27 -9.64 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566902922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.981 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds