Wall clock time and date at job start Mon Mar 30 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29827 * 118.54758 * 2 1 4 4 C 1.50145 * 123.28013 * 180.11419 * 3 2 1 5 5 N 1.46839 * 110.27883 * 343.21205 * 4 3 2 6 6 C 1.46909 * 110.99825 * 287.54159 * 5 4 3 7 7 C 1.52998 * 109.46672 * 293.94947 * 6 5 4 8 8 N 1.46908 * 109.46903 * 180.02562 * 7 6 5 9 9 C 1.46895 * 110.99998 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47027 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.47211 * 304.99829 * 10 9 8 12 12 C 1.47203 * 109.47032 * 64.99697 * 10 9 8 13 13 N 8.47787 * 123.91560 * 98.75532 * 2 1 3 14 14 C 1.53002 * 109.47136 * 184.99657 * 10 9 8 15 15 C 1.50697 * 109.47209 * 175.00004 * 14 10 9 16 16 H 1.08008 * 120.00065 * 0.02562 * 15 14 10 17 17 C 1.37876 * 120.00455 * 180.02562 * 15 14 10 18 18 N 1.31520 * 119.99770 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00309 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47331 * 59.99759 * 19 17 15 21 21 H 1.48502 * 109.46822 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46685 * 299.99210 * 19 17 15 23 23 C 1.47241 * 110.20324 * 50.92522 * 5 4 3 24 24 C 1.50297 * 118.55558 * 180.24365 * 2 1 3 25 25 H 1.08993 * 109.47431 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47115 * 119.99816 * 1 2 3 27 27 H 1.08996 * 109.46811 * 239.99130 * 1 2 3 28 28 H 1.08002 * 118.36271 * 0.40391 * 3 2 1 29 29 H 1.08997 * 109.33533 * 103.46105 * 4 3 2 30 30 H 1.09008 * 109.33283 * 222.96676 * 4 3 2 31 31 H 1.08991 * 109.47507 * 53.94955 * 6 5 4 32 32 H 1.09000 * 109.46643 * 173.95350 * 6 5 4 33 33 H 1.09004 * 109.47193 * 300.00020 * 7 6 5 34 34 H 1.08993 * 109.47677 * 60.00267 * 7 6 5 35 35 H 1.00903 * 110.99433 * 303.95573 * 8 7 6 36 36 H 1.09000 * 109.47180 * 299.99598 * 9 8 7 37 37 H 1.09001 * 109.47494 * 59.99337 * 9 8 7 38 38 H 1.09001 * 109.47226 * 294.99719 * 14 10 9 39 39 H 1.08996 * 109.46949 * 55.00403 * 14 10 9 40 40 H 0.96996 * 119.99967 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.63743 * 50.89287 * 23 5 4 42 42 H 1.09004 * 109.63640 * 171.50000 * 23 5 4 43 43 H 1.08995 * 109.56219 * 43.50653 * 24 2 1 44 44 H 1.09003 * 109.24817 * 283.69071 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1274 1.1404 0.0000 4 6 3.6238 1.2643 -0.0025 5 7 4.2404 -0.0083 0.3930 6 6 4.0575 -0.2580 1.8291 7 6 4.8343 0.7878 2.6315 8 7 4.6519 0.5378 4.0676 9 6 5.3847 1.5253 4.8711 10 6 5.1705 1.2333 6.3576 11 1 4.1022 1.2050 6.5721 12 6 5.7731 -0.0670 6.6940 13 7 6.2374 -1.0709 6.9535 14 6 5.8297 2.3323 7.1934 15 6 5.5150 2.1122 8.6507 16 1 4.9061 1.2721 8.9508 17 6 6.0043 2.9832 9.6009 18 7 6.7462 4.0059 9.2356 19 14 5.6148 2.7099 11.4073 20 1 6.1368 1.3860 11.8315 21 1 6.2545 3.7767 12.2185 22 1 4.1440 2.7496 11.6079 23 6 3.6875 -1.1123 -0.4091 24 6 2.2254 -1.3201 -0.0056 25 1 -0.3634 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8901 27 1 -0.3633 -0.5140 0.8899 28 1 1.5378 2.0453 0.0067 29 1 3.9619 1.5336 -1.0031 30 1 3.9225 2.0435 0.6988 31 1 2.9982 -0.1930 2.0772 32 1 4.4279 -1.2532 2.0749 33 1 5.8937 0.7228 2.3834 34 1 4.4640 1.7830 2.3858 35 1 3.6728 0.5284 4.3115 36 1 6.4479 1.4661 4.6384 37 1 5.0176 2.5255 4.6411 38 1 6.9093 2.3025 7.0464 39 1 5.4472 3.3043 6.8820 40 1 7.0901 4.6189 9.9040 41 1 3.7429 -0.8593 -1.4679 42 1 4.2537 -2.0238 -0.2172 43 1 1.7456 -1.9937 -0.7155 44 1 2.1833 -1.7564 0.9924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567710908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:03 Heat of formation + Delta-G solvation = 30.832219 kcal Electronic energy + Delta-G solvation = -20890.978671 eV Core-core repulsion = 17842.823160 eV Total energy + Delta-G solvation = -3048.155511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06204 -37.35196 -35.51160 -34.30481 -33.43009 -31.76571 -31.18823 -29.31993 -27.32690 -25.91899 -24.11575 -23.30496 -22.32429 -21.78422 -21.13256 -17.71990 -17.04211 -16.41246 -16.15488 -15.88635 -15.28791 -14.96242 -14.63354 -14.54673 -14.11543 -13.84279 -13.68600 -13.45967 -12.95381 -12.78559 -12.41871 -12.34395 -12.21309 -12.07455 -11.99323 -11.86290 -11.63049 -11.40043 -11.22450 -11.06952 -10.92560 -10.82435 -10.66101 -10.52566 -10.22302 -9.53132 -9.23130 -9.07373 -8.54103 -8.44944 -8.26190 -6.08904 -4.12153 1.87227 3.31534 3.35844 3.39560 3.58378 3.77769 3.86237 4.34934 4.41271 4.49548 4.59362 4.73335 4.85137 4.92002 5.00126 5.06632 5.20964 5.22064 5.29027 5.29265 5.35250 5.38119 5.48522 5.57953 5.58877 5.59401 5.64063 5.72282 5.74215 5.92558 6.00536 6.05018 6.24430 6.40302 6.50452 6.61122 6.79759 6.87743 7.12593 7.42799 7.49705 7.54701 7.86209 8.23897 8.61232 8.92435 9.53219 11.01993 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.002840 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.420359 B = 9856.349525 C =10010.771771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.125 4.125 3 C -0.192 4.192 4 C 0.075 3.925 5 N -0.527 5.527 6 C 0.053 3.947 7 C 0.064 3.936 8 N -0.693 5.693 9 C 0.069 3.931 10 C 0.009 3.991 11 H 0.098 0.902 12 C 0.256 3.744 13 N -0.479 5.479 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.054 3.946 24 C -0.122 4.122 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.030 0.970 35 H 0.339 0.661 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 -4.609 -21.894 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.126 4.126 3 C -0.211 4.211 4 C -0.053 4.053 5 N -0.249 5.249 6 C -0.075 4.075 7 C -0.066 4.066 8 N -0.324 5.324 9 C -0.061 4.061 10 C -0.013 4.013 11 H 0.116 0.884 12 C -0.061 4.061 13 N -0.156 5.156 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.074 4.074 24 C -0.161 4.161 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.156 0.844 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.107 -6.408 -21.493 24.206 hybrid contribution -1.932 1.129 1.039 2.467 sum -11.039 -5.279 -20.454 23.834 Atomic orbital electron populations 1.20917 0.92374 1.02313 1.01975 1.20960 0.95842 0.94843 1.00932 1.22797 0.97958 0.97626 1.02758 1.21185 0.89167 0.92883 1.02071 1.62643 1.55583 1.02300 1.04384 1.22100 0.98582 1.00369 0.86498 1.21903 1.01303 0.96053 0.87310 1.60433 1.16134 1.52263 1.03618 1.22048 0.99577 0.93051 0.91445 1.19217 1.00529 0.87364 0.94159 0.88392 1.28855 0.92558 0.93642 0.91084 1.80985 1.10481 1.13340 1.10816 1.19160 0.96421 0.91445 0.93646 1.21114 1.32735 1.11303 0.91370 0.92552 1.24955 0.94851 0.95043 0.99117 1.69930 1.34348 1.14639 1.34147 0.86650 0.78668 0.77919 0.84822 1.20207 1.21188 1.20068 1.22256 0.92203 0.94913 0.98036 1.21055 0.97007 0.95322 1.02703 0.92110 0.91826 0.91714 0.87544 0.89706 0.89402 0.94198 0.90028 0.90270 0.95213 0.84395 0.90411 0.93327 0.95520 0.94475 0.92737 0.90538 0.90069 0.90624 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.02 36.01 0.36 -0.47 16 2 C -0.13 -1.04 5.23 -100.93 -0.53 -1.57 16 3 C -0.19 -1.63 8.99 -35.96 -0.32 -1.95 16 4 C 0.07 0.65 5.83 -5.28 -0.03 0.62 16 5 N -0.53 -5.03 5.03 -236.10 -1.19 -6.22 16 6 C 0.05 0.55 4.32 -3.82 -0.02 0.53 16 7 C 0.06 0.73 5.64 -3.82 -0.02 0.71 16 8 N -0.69 -9.11 6.20 -113.78 -0.71 -9.82 16 9 C 0.07 1.02 5.05 -3.83 -0.02 1.00 16 10 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 11 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 12 C 0.26 5.41 13.67 -20.75 -0.28 5.13 16 13 N -0.48 -11.06 18.54 42.16 0.78 -10.28 16 14 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -14.10 8.60 -34.44 -0.30 -14.40 16 16 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.05 0.44 6.03 -3.59 -0.02 0.42 16 24 C -0.12 -0.95 5.27 -28.03 -0.15 -1.10 16 25 H 0.06 0.40 7.62 -51.93 -0.40 0.01 16 26 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.11 0.84 7.63 -52.49 -0.40 0.44 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.77 6.01 -51.92 -0.31 0.46 16 31 H 0.04 0.42 5.99 -51.93 -0.31 0.11 16 32 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.03 0.32 6.33 -51.93 -0.33 -0.01 16 35 H 0.34 4.05 8.73 -39.29 -0.34 3.70 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.65 7.13 -51.93 -0.37 0.28 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -30.13 355.88 -9.29 -39.42 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.48 Total: -1.03 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.77 Total: -8.89 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.38 Total: -51.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.13 -9.29 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567710908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.254 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds