Wall clock time and date at job start Mon Mar 30 2020 02:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29827 * 118.54758 * 2 1 4 4 C 1.50145 * 123.28013 * 180.11419 * 3 2 1 5 5 N 1.46839 * 110.27883 * 343.21205 * 4 3 2 6 6 C 1.46909 * 110.99825 * 287.54159 * 5 4 3 7 7 C 1.52998 * 109.46672 * 293.94947 * 6 5 4 8 8 N 1.46908 * 109.46903 * 180.02562 * 7 6 5 9 9 C 1.46895 * 110.99998 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47027 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.47211 * 304.99829 * 10 9 8 12 12 C 1.47203 * 109.47032 * 64.99697 * 10 9 8 13 13 N 8.47787 * 123.91560 * 98.75532 * 2 1 3 14 14 C 1.53002 * 109.47136 * 184.99657 * 10 9 8 15 15 C 1.50697 * 109.47209 * 175.00004 * 14 10 9 16 16 H 1.08008 * 120.00065 * 0.02562 * 15 14 10 17 17 C 1.37876 * 120.00455 * 180.02562 * 15 14 10 18 18 N 1.31520 * 119.99770 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00309 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47331 * 59.99759 * 19 17 15 21 21 H 1.48502 * 109.46822 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46685 * 299.99210 * 19 17 15 23 23 C 1.47241 * 110.20324 * 50.92522 * 5 4 3 24 24 C 1.50297 * 118.55558 * 180.24365 * 2 1 3 25 25 H 1.08993 * 109.47431 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47115 * 119.99816 * 1 2 3 27 27 H 1.08996 * 109.46811 * 239.99130 * 1 2 3 28 28 H 1.08002 * 118.36271 * 0.40391 * 3 2 1 29 29 H 1.08997 * 109.33533 * 103.46105 * 4 3 2 30 30 H 1.09008 * 109.33283 * 222.96676 * 4 3 2 31 31 H 1.08991 * 109.47507 * 53.94955 * 6 5 4 32 32 H 1.09000 * 109.46643 * 173.95350 * 6 5 4 33 33 H 1.09004 * 109.47193 * 300.00020 * 7 6 5 34 34 H 1.08993 * 109.47677 * 60.00267 * 7 6 5 35 35 H 1.00903 * 110.99433 * 303.95573 * 8 7 6 36 36 H 1.09000 * 109.47180 * 299.99598 * 9 8 7 37 37 H 1.09001 * 109.47494 * 59.99337 * 9 8 7 38 38 H 1.09001 * 109.47226 * 294.99719 * 14 10 9 39 39 H 1.08996 * 109.46949 * 55.00403 * 14 10 9 40 40 H 0.96996 * 119.99967 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.63743 * 50.89287 * 23 5 4 42 42 H 1.09004 * 109.63640 * 171.50000 * 23 5 4 43 43 H 1.08995 * 109.56219 * 43.50653 * 24 2 1 44 44 H 1.09003 * 109.24817 * 283.69071 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1274 1.1404 0.0000 4 6 3.6238 1.2643 -0.0025 5 7 4.2404 -0.0083 0.3930 6 6 4.0575 -0.2580 1.8291 7 6 4.8343 0.7878 2.6315 8 7 4.6519 0.5378 4.0676 9 6 5.3847 1.5253 4.8711 10 6 5.1705 1.2333 6.3576 11 1 4.1022 1.2050 6.5721 12 6 5.7731 -0.0670 6.6940 13 7 6.2374 -1.0709 6.9535 14 6 5.8297 2.3323 7.1934 15 6 5.5150 2.1122 8.6507 16 1 4.9061 1.2721 8.9508 17 6 6.0043 2.9832 9.6009 18 7 6.7462 4.0059 9.2356 19 14 5.6148 2.7099 11.4073 20 1 6.1368 1.3860 11.8315 21 1 6.2545 3.7767 12.2185 22 1 4.1440 2.7496 11.6079 23 6 3.6875 -1.1123 -0.4091 24 6 2.2254 -1.3201 -0.0056 25 1 -0.3634 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8901 27 1 -0.3633 -0.5140 0.8899 28 1 1.5378 2.0453 0.0067 29 1 3.9619 1.5336 -1.0031 30 1 3.9225 2.0435 0.6988 31 1 2.9982 -0.1930 2.0772 32 1 4.4279 -1.2532 2.0749 33 1 5.8937 0.7228 2.3834 34 1 4.4640 1.7830 2.3858 35 1 3.6728 0.5284 4.3115 36 1 6.4479 1.4661 4.6384 37 1 5.0176 2.5255 4.6411 38 1 6.9093 2.3025 7.0464 39 1 5.4472 3.3043 6.8820 40 1 7.0901 4.6189 9.9040 41 1 3.7429 -0.8593 -1.4679 42 1 4.2537 -2.0238 -0.2172 43 1 1.7456 -1.9937 -0.7155 44 1 2.1833 -1.7564 0.9924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567710908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:02 Heat of formation + Delta-G solvation = 11.773178 kcal Electronic energy + Delta-G solvation = -20891.805133 eV Core-core repulsion = 17842.823160 eV Total energy + Delta-G solvation = -3048.981973 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.74808 -38.76761 -36.79565 -35.56343 -34.92236 -33.34131 -31.86874 -30.38005 -28.42103 -27.21462 -24.90991 -24.39696 -23.48233 -23.38902 -21.95964 -18.74683 -18.35429 -18.20866 -16.97948 -16.78001 -16.54197 -16.02195 -15.84718 -15.42995 -15.34454 -14.98996 -14.57049 -14.38686 -14.26028 -14.08329 -13.72659 -13.51887 -13.36428 -13.22887 -13.02756 -12.88180 -12.77880 -12.70947 -12.52933 -12.45541 -12.39402 -12.13986 -11.90940 -11.71506 -11.55193 -11.37917 -11.11998 -10.54579 -9.69613 -9.34177 -9.20383 -8.18991 -6.27373 1.25322 1.41290 1.43368 1.50231 2.07780 2.14698 2.41884 2.79660 3.16304 3.32884 3.51292 3.81970 3.95332 4.05671 4.11431 4.22741 4.23577 4.32071 4.40241 4.52410 4.63439 4.69923 4.70951 4.74481 4.77582 4.81593 4.82688 4.91901 4.96756 5.02843 5.03326 5.08531 5.12653 5.15687 5.47216 5.62470 5.64132 5.79566 5.95279 6.03269 6.09356 6.19422 6.22854 6.52183 6.83726 6.94278 7.41193 8.91802 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.002840 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.420359 B = 9856.349525 C =10010.771771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.075 3.925 5 N -0.537 5.537 6 C 0.063 3.937 7 C 0.070 3.930 8 N -0.700 5.700 9 C 0.081 3.919 10 C 0.020 3.980 11 H 0.121 0.879 12 C 0.266 3.734 13 N -0.515 5.515 14 C 0.038 3.962 15 C -0.540 4.540 16 H 0.055 0.945 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.949 3.051 20 H -0.282 1.282 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.053 3.947 24 C -0.120 4.120 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.348 0.652 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.000 1.000 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.378 -4.695 -22.598 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.132 4.132 3 C -0.219 4.219 4 C -0.053 4.053 5 N -0.259 5.259 6 C -0.065 4.065 7 C -0.059 4.059 8 N -0.332 5.332 9 C -0.049 4.049 10 C -0.002 4.002 11 H 0.138 0.862 12 C -0.050 4.050 13 N -0.193 5.193 14 C -0.001 4.001 15 C -0.579 4.579 16 H 0.073 0.927 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.774 3.226 20 H -0.207 1.207 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.075 4.075 24 C -0.158 4.158 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.167 0.833 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.018 0.982 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.556 -6.501 -22.211 25.436 hybrid contribution -1.482 1.144 1.209 2.228 sum -12.038 -5.357 -21.002 24.793 Atomic orbital electron populations 1.20928 0.91548 1.02644 1.02394 1.21166 0.96605 0.94930 1.00535 1.22853 0.97846 0.97993 1.03244 1.21197 0.89404 0.92323 1.02353 1.62636 1.56207 1.03151 1.03905 1.21918 0.98189 0.99295 0.87083 1.21848 1.00849 0.97007 0.86240 1.60343 1.16702 1.51750 1.04439 1.21835 0.99531 0.94372 0.89172 1.19187 1.00879 0.84331 0.95763 0.86175 1.29375 0.91747 0.93862 0.90051 1.80984 1.11611 1.14651 1.12037 1.18984 0.95104 0.93055 0.92944 1.21543 1.32167 1.10860 0.93281 0.92710 1.25724 0.94958 0.95024 1.03100 1.70028 1.35485 1.15520 1.35346 0.85748 0.79131 0.77406 0.80293 1.20736 1.20743 1.18646 1.22302 0.92479 0.94544 0.98156 1.21035 0.96771 0.95400 1.02625 0.91860 0.90942 0.91714 0.87058 0.89063 0.89595 0.94175 0.91146 0.91402 0.94135 0.83340 0.91328 0.91504 0.98171 0.94581 0.92700 0.89860 0.89926 0.89381 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 10.02 71.24 0.71 -0.74 16 2 C -0.13 -1.96 5.23 -15.41 -0.08 -2.04 16 3 C -0.20 -3.06 8.99 26.68 0.24 -2.82 16 4 C 0.07 1.18 5.83 85.39 0.50 1.68 16 5 N -0.54 -9.55 5.03 -900.89 -4.53 -14.08 16 6 C 0.06 1.24 4.32 86.30 0.37 1.61 16 7 C 0.07 1.49 5.64 86.30 0.49 1.97 16 8 N -0.70 -17.22 6.20 -513.89 -3.19 -20.41 16 9 C 0.08 2.29 5.05 86.30 0.44 2.73 16 10 C 0.02 0.72 2.35 -12.60 -0.03 0.69 16 11 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 12 C 0.27 11.07 13.67 89.44 1.22 12.29 16 13 N -0.52 -23.63 18.54 20.01 0.37 -23.26 16 14 C 0.04 1.75 4.42 29.85 0.13 1.88 16 15 C -0.54 -28.67 8.60 25.60 0.22 -28.45 16 16 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 17 C 0.01 0.60 5.46 84.65 0.46 1.06 16 18 N -0.92 -53.24 13.29 21.45 0.28 -52.95 16 19 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 C 0.05 0.79 6.03 86.27 0.52 1.31 16 24 C -0.12 -1.67 5.27 29.75 0.16 -1.51 16 25 H 0.06 0.73 7.62 -2.39 -0.02 0.71 16 26 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 1.57 7.63 -2.91 -0.02 1.54 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.37 6.01 -2.38 -0.01 1.35 16 31 H 0.04 0.78 5.99 -2.39 -0.01 0.77 16 32 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 33 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.04 0.80 6.33 -2.39 -0.02 0.78 16 35 H 0.35 7.54 8.73 -89.69 -0.78 6.75 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 42 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.08 7.13 -2.39 -0.02 1.07 16 Total: -1.00 -63.14 355.88 0.50 -62.64 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.19 Total: 12.90 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.35 Total: -10.34 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -7.07 Total: -110.70 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -63.14 0.50 -62.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567710908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.411 kcal (2) G-P(sol) polarization free energy of solvation -63.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds