Wall clock time and date at job start Mon Mar 30 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47433 * 2 1 4 4 C 1.35893 * 117.00392 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05957 * 180.02562 * 4 3 2 6 6 C 1.38138 * 119.94337 * 180.30421 * 5 4 3 7 7 C 1.38271 * 120.05803 * 359.41293 * 6 5 4 8 8 C 1.50698 * 119.94467 * 180.30180 * 7 6 5 9 9 C 1.52998 * 109.47439 * 270.30447 * 8 7 6 10 10 H 1.09003 * 109.47417 * 305.00096 * 9 8 7 11 11 C 1.53002 * 109.47079 * 65.00244 * 9 8 7 12 12 C 1.53000 * 109.47274 * 184.99947 * 9 8 7 13 13 N 1.46897 * 109.47048 * 174.99908 * 12 9 8 14 14 C 1.46906 * 111.00152 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47375 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00148 * 359.97438 * 15 14 13 17 17 C 1.37869 * 119.99851 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00452 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99874 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47408 * 90.00067 * 19 17 15 21 21 H 1.48509 * 109.47121 * 209.99817 * 19 17 15 22 22 H 1.48493 * 109.47157 * 329.99849 * 19 17 15 23 23 C 1.38259 * 120.10889 * 0.60974 * 7 6 5 24 24 C 1.38146 * 120.05909 * 359.67363 * 23 7 6 25 25 H 1.08994 * 109.46893 * 300.00316 * 1 2 3 26 26 H 1.09001 * 109.46536 * 59.99754 * 1 2 3 27 27 H 1.08995 * 109.46775 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47184 * 240.00253 * 2 1 3 29 29 H 1.09001 * 109.46987 * 119.99960 * 2 1 3 30 30 H 1.08002 * 120.02291 * 0.02562 * 5 4 3 31 31 H 1.08004 * 119.96766 * 179.69880 * 6 5 4 32 32 H 1.09000 * 109.47353 * 30.30435 * 8 7 6 33 33 H 1.09002 * 109.47057 * 150.30403 * 8 7 6 34 34 H 1.08999 * 109.46806 * 299.99784 * 11 9 8 35 35 H 1.08998 * 109.47460 * 59.99985 * 11 9 8 36 36 H 1.09001 * 109.46818 * 180.02562 * 11 9 8 37 37 H 1.08996 * 109.47018 * 295.00169 * 12 9 8 38 38 H 1.09001 * 109.47044 * 55.00457 * 12 9 8 39 39 H 1.00900 * 111.00474 * 303.95060 * 13 12 9 40 40 H 1.09001 * 109.46897 * 300.00256 * 14 13 12 41 41 H 1.09001 * 109.46671 * 59.99631 * 14 13 12 42 42 H 0.97000 * 119.99898 * 180.02562 * 18 17 15 43 43 H 1.08006 * 119.97147 * 179.69573 * 23 7 6 44 44 H 1.07993 * 120.03340 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8068 0.0011 6 6 5.2551 2.9850 -0.0047 7 6 6.0963 1.8877 0.0012 8 6 7.5903 2.0851 0.0017 9 6 8.0963 2.1529 -1.4406 10 1 7.7759 1.2617 -1.9803 11 6 7.5240 3.3964 -2.1240 12 6 9.6245 2.2280 -1.4419 13 7 10.1162 2.1724 -2.8250 14 6 11.5831 2.2417 -2.8654 15 6 12.0496 2.1827 -4.2972 16 1 11.3286 2.1013 -5.0971 17 6 13.3968 2.2314 -4.5858 18 7 14.2750 2.3299 -3.6116 19 14 13.9751 2.1575 -6.3605 20 1 14.0607 3.5340 -6.9110 21 1 15.3137 1.5170 -6.4187 22 1 13.0108 1.3627 -7.1626 23 6 5.5690 0.6096 0.0002 24 6 4.1998 0.4259 0.0001 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2285 3.6642 0.0015 31 1 5.6693 3.9825 -0.0092 32 1 7.8338 3.0147 0.5162 33 1 8.0669 1.2501 0.5152 34 1 6.4353 3.3429 -2.1230 35 1 7.8444 4.2876 -1.5843 36 1 7.8842 3.4444 -3.1516 37 1 9.9426 3.1628 -0.9804 38 1 10.0301 1.3880 -0.8781 39 1 9.7806 1.3451 -3.2951 40 1 11.9153 3.1764 -2.4137 41 1 12.0019 1.4015 -2.3114 42 1 15.2228 2.3645 -3.8148 43 1 6.2282 -0.2460 -0.0002 44 1 3.7885 -0.5727 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591771106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:53 Heat of formation + Delta-G solvation = -39.622142 kcal Electronic energy + Delta-G solvation = -20522.275043 eV Core-core repulsion = 17438.771651 eV Total energy + Delta-G solvation = -3083.503392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.35658 -38.34877 -36.41457 -33.94064 -32.42252 -31.85351 -31.02882 -29.81886 -26.93084 -26.33621 -24.28679 -23.99639 -22.25413 -21.51195 -20.93902 -19.73508 -18.44511 -16.40030 -16.36348 -16.17403 -15.52383 -14.90021 -14.63089 -14.58037 -14.15839 -14.03145 -13.63498 -13.51719 -13.38783 -13.01177 -12.69115 -12.40681 -12.19271 -12.02205 -11.90720 -11.61237 -11.37507 -11.32619 -11.06605 -10.88617 -10.86223 -10.71771 -10.48505 -10.34698 -10.27401 -9.80687 -9.14354 -9.07623 -8.45436 -8.13201 -7.22554 -6.01097 -4.02864 1.24427 1.33481 2.95997 3.33565 3.39070 3.43034 3.65377 4.44705 4.54308 4.54888 4.72037 4.77143 4.80840 4.87832 5.08780 5.16169 5.21510 5.30916 5.34715 5.36298 5.39649 5.50035 5.58090 5.65663 5.73791 5.80033 5.96599 6.00748 6.06940 6.18481 6.22431 6.27603 6.36082 6.42425 6.60279 6.66759 6.74116 6.81134 7.24889 7.29580 7.45996 7.81528 8.16284 8.44199 8.66077 9.06798 9.61966 11.10013 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036953 B = 0.002439 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.541060 B =11475.369758 C =11730.812419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.118 3.882 5 C -0.151 4.151 6 C -0.074 4.074 7 C -0.105 4.105 8 C -0.075 4.075 9 C -0.081 4.081 10 H 0.065 0.935 11 C -0.138 4.138 12 C 0.064 3.936 13 N -0.688 5.688 14 C 0.194 3.806 15 C -0.512 4.512 16 H 0.062 0.938 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.079 4.079 24 C -0.207 4.207 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.016 0.984 39 H 0.327 0.673 40 H 0.027 0.973 41 H -0.015 1.015 42 H 0.261 0.739 43 H 0.124 0.876 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.772 -3.881 10.222 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.073 3.927 5 C -0.170 4.170 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.113 4.113 9 C -0.100 4.100 10 H 0.083 0.917 11 C -0.195 4.195 12 C -0.067 4.067 13 N -0.318 5.318 14 C 0.067 3.933 15 C -0.551 4.551 16 H 0.080 0.920 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.097 4.097 24 C -0.226 4.226 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.143 0.857 40 H 0.045 0.955 41 H 0.003 0.997 42 H 0.070 0.930 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.803 -3.051 10.147 26.972 hybrid contribution 0.809 -1.216 -0.569 1.567 sum -23.994 -4.267 9.578 26.185 Atomic orbital electron populations 1.21774 0.92826 1.02809 1.03496 1.22753 0.95775 0.82172 1.01369 1.86046 1.19313 1.29104 1.88924 1.18966 0.82030 0.94242 0.97440 1.20409 0.95251 0.94665 1.06684 1.20917 0.91872 0.98987 0.97456 1.19856 0.96118 0.92815 1.01691 1.20646 0.90320 1.02562 0.97727 1.21114 0.95473 0.99337 0.94080 0.91689 1.21763 0.99098 0.96628 1.02001 1.21935 0.92827 0.99848 0.92043 1.60646 1.13831 1.44690 1.12644 1.19543 0.80852 0.95898 0.97017 1.21198 0.91639 1.49830 0.92448 0.91989 1.25004 0.96773 0.95436 0.97498 1.69969 1.01597 1.50810 1.31442 0.86480 0.77856 0.78187 0.84749 1.20622 1.21340 1.19875 1.20863 0.94107 0.97000 0.97711 1.21186 0.94376 0.97809 1.09202 0.91572 0.91509 0.90418 0.92063 0.92159 0.85466 0.85254 0.90975 0.91285 0.93660 0.93348 0.91208 0.91866 0.96630 0.85728 0.95509 0.99744 0.92957 0.85851 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.05 0.40 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.41 10.14 -19.40 -0.20 -3.61 16 4 C 0.12 1.34 6.69 -39.21 -0.26 1.08 16 5 C -0.15 -1.68 9.99 -39.43 -0.39 -2.08 16 6 C -0.07 -0.82 7.93 -39.61 -0.31 -1.14 16 7 C -0.10 -1.21 4.72 -104.60 -0.49 -1.70 16 8 C -0.07 -0.89 4.84 -27.89 -0.13 -1.03 16 9 C -0.08 -1.15 2.52 -90.62 -0.23 -1.38 16 10 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 11 C -0.14 -1.96 8.63 37.16 0.32 -1.64 16 12 C 0.06 1.13 5.07 -3.83 -0.02 1.11 16 13 N -0.69 -14.88 5.95 -115.06 -0.68 -15.57 16 14 C 0.19 5.17 5.44 -4.97 -0.03 5.14 16 15 C -0.51 -14.74 9.32 -34.44 -0.32 -15.06 16 16 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 19 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.08 -0.87 9.69 -39.61 -0.38 -1.26 16 24 C -0.21 -2.19 9.04 -39.43 -0.36 -2.55 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.26 8.02 -52.48 -0.42 0.84 16 32 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.04 0.58 6.25 -51.93 -0.32 0.26 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.14 7.75 -51.93 -0.40 0.73 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.33 6.80 8.72 -39.29 -0.34 6.45 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H -0.02 -0.43 8.14 -51.93 -0.42 -0.85 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.12 1.05 6.30 -52.49 -0.33 0.72 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -31.24 359.36 -9.53 -40.76 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.65 Total: 1.41 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.13 Total: -18.89 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.05 Total: -42.02 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.20 Total: -3.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.24 -9.53 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.143 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds