Wall clock time and date at job start Mon Mar 30 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47433 * 2 1 4 4 C 1.35893 * 117.00392 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05957 * 180.02562 * 4 3 2 6 6 C 1.38138 * 119.94337 * 180.30421 * 5 4 3 7 7 C 1.38271 * 120.05803 * 359.41293 * 6 5 4 8 8 C 1.50698 * 119.94467 * 180.30180 * 7 6 5 9 9 C 1.52998 * 109.47439 * 270.30447 * 8 7 6 10 10 H 1.09003 * 109.47417 * 305.00096 * 9 8 7 11 11 C 1.53002 * 109.47079 * 65.00244 * 9 8 7 12 12 C 1.53000 * 109.47274 * 184.99947 * 9 8 7 13 13 N 1.46897 * 109.47048 * 174.99908 * 12 9 8 14 14 C 1.46906 * 111.00152 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47375 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00148 * 359.97438 * 15 14 13 17 17 C 1.37869 * 119.99851 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00452 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99874 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47408 * 90.00067 * 19 17 15 21 21 H 1.48509 * 109.47121 * 209.99817 * 19 17 15 22 22 H 1.48493 * 109.47157 * 329.99849 * 19 17 15 23 23 C 1.38259 * 120.10889 * 0.60974 * 7 6 5 24 24 C 1.38146 * 120.05909 * 359.67363 * 23 7 6 25 25 H 1.08994 * 109.46893 * 300.00316 * 1 2 3 26 26 H 1.09001 * 109.46536 * 59.99754 * 1 2 3 27 27 H 1.08995 * 109.46775 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47184 * 240.00253 * 2 1 3 29 29 H 1.09001 * 109.46987 * 119.99960 * 2 1 3 30 30 H 1.08002 * 120.02291 * 0.02562 * 5 4 3 31 31 H 1.08004 * 119.96766 * 179.69880 * 6 5 4 32 32 H 1.09000 * 109.47353 * 30.30435 * 8 7 6 33 33 H 1.09002 * 109.47057 * 150.30403 * 8 7 6 34 34 H 1.08999 * 109.46806 * 299.99784 * 11 9 8 35 35 H 1.08998 * 109.47460 * 59.99985 * 11 9 8 36 36 H 1.09001 * 109.46818 * 180.02562 * 11 9 8 37 37 H 1.08996 * 109.47018 * 295.00169 * 12 9 8 38 38 H 1.09001 * 109.47044 * 55.00457 * 12 9 8 39 39 H 1.00900 * 111.00474 * 303.95060 * 13 12 9 40 40 H 1.09001 * 109.46897 * 300.00256 * 14 13 12 41 41 H 1.09001 * 109.46671 * 59.99631 * 14 13 12 42 42 H 0.97000 * 119.99898 * 180.02562 * 18 17 15 43 43 H 1.08006 * 119.97147 * 179.69573 * 23 7 6 44 44 H 1.07993 * 120.03340 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8068 0.0011 6 6 5.2551 2.9850 -0.0047 7 6 6.0963 1.8877 0.0012 8 6 7.5903 2.0851 0.0017 9 6 8.0963 2.1529 -1.4406 10 1 7.7759 1.2617 -1.9803 11 6 7.5240 3.3964 -2.1240 12 6 9.6245 2.2280 -1.4419 13 7 10.1162 2.1724 -2.8250 14 6 11.5831 2.2417 -2.8654 15 6 12.0496 2.1827 -4.2972 16 1 11.3286 2.1013 -5.0971 17 6 13.3968 2.2314 -4.5858 18 7 14.2750 2.3299 -3.6116 19 14 13.9751 2.1575 -6.3605 20 1 14.0607 3.5340 -6.9110 21 1 15.3137 1.5170 -6.4187 22 1 13.0108 1.3627 -7.1626 23 6 5.5690 0.6096 0.0002 24 6 4.1998 0.4259 0.0001 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2285 3.6642 0.0015 31 1 5.6693 3.9825 -0.0092 32 1 7.8338 3.0147 0.5162 33 1 8.0669 1.2501 0.5152 34 1 6.4353 3.3429 -2.1230 35 1 7.8444 4.2876 -1.5843 36 1 7.8842 3.4444 -3.1516 37 1 9.9426 3.1628 -0.9804 38 1 10.0301 1.3880 -0.8781 39 1 9.7806 1.3451 -3.2951 40 1 11.9153 3.1764 -2.4137 41 1 12.0019 1.4015 -2.3114 42 1 15.2228 2.3645 -3.8148 43 1 6.2282 -0.2460 -0.0002 44 1 3.7885 -0.5727 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591771106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:52 Heat of formation + Delta-G solvation = -57.440434 kcal Electronic energy + Delta-G solvation = -20523.047703 eV Core-core repulsion = 17438.771651 eV Total energy + Delta-G solvation = -3084.276051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14372 -39.25451 -37.75857 -35.61041 -34.06228 -32.76556 -31.81391 -30.88573 -28.78536 -27.40630 -25.64389 -24.86301 -23.48908 -22.94107 -21.96534 -20.92062 -19.19131 -18.52253 -17.02222 -17.00853 -16.73764 -16.50676 -16.22814 -15.52336 -15.43350 -15.28148 -14.56675 -14.42317 -14.33750 -14.18321 -14.02990 -13.62042 -13.36098 -13.12244 -13.00950 -12.75693 -12.70086 -12.63963 -12.49935 -12.44855 -12.10066 -11.90616 -11.70023 -11.58255 -11.47453 -11.44939 -11.13661 -10.65682 -9.89929 -9.06848 -8.97490 -8.22382 -6.33631 0.42846 0.48498 1.41152 1.43252 1.54418 2.29588 2.40164 2.80855 3.10599 3.59710 3.84521 3.89335 3.99073 4.05524 4.06184 4.18185 4.33378 4.36804 4.40442 4.47692 4.50304 4.59375 4.74377 4.79256 4.89077 4.90880 4.94051 4.98410 5.06880 5.12768 5.17228 5.19875 5.21723 5.29069 5.38490 5.43166 5.48758 5.57848 5.62506 5.79236 5.88739 6.03206 6.47012 6.49889 6.74686 6.90657 7.37359 8.89155 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036953 B = 0.002439 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.541060 B =11475.369758 C =11730.812419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.109 3.891 5 C -0.163 4.163 6 C -0.078 4.078 7 C -0.116 4.116 8 C -0.066 4.066 9 C -0.069 4.069 10 H 0.065 0.935 11 C -0.132 4.132 12 C 0.064 3.936 13 N -0.685 5.685 14 C 0.208 3.792 15 C -0.535 4.535 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.975 3.025 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.263 1.263 23 C -0.086 4.086 24 C -0.210 4.210 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.333 0.667 40 H -0.002 1.002 41 H -0.041 1.041 42 H 0.265 0.735 43 H 0.134 0.866 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.075 -4.523 9.690 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.064 3.936 5 C -0.182 4.182 6 C -0.096 4.096 7 C -0.116 4.116 8 C -0.104 4.104 9 C -0.088 4.088 10 H 0.083 0.917 11 C -0.189 4.189 12 C -0.066 4.066 13 N -0.316 5.316 14 C 0.080 3.920 15 C -0.573 4.573 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.799 3.201 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.104 4.104 24 C -0.229 4.229 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.150 0.850 40 H 0.016 0.984 41 H -0.023 1.023 42 H 0.074 0.926 43 H 0.152 0.848 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.140 -3.699 9.624 28.100 hybrid contribution 1.134 -1.035 -0.338 1.572 sum -25.006 -4.734 9.287 27.091 Atomic orbital electron populations 1.21803 0.91506 1.04130 1.03170 1.23030 0.96884 0.80940 1.02082 1.86038 1.18967 1.31110 1.88813 1.19178 0.82575 0.94603 0.97294 1.20616 0.95538 0.95192 1.06825 1.21064 0.91907 0.99428 0.97153 1.19843 0.95659 0.93330 1.02805 1.20531 0.90808 1.03218 0.95848 1.20986 0.92486 0.99351 0.95977 0.91705 1.21701 0.99986 0.96747 1.00511 1.22023 0.95380 0.99476 0.89673 1.60527 1.10656 1.45065 1.15313 1.19198 0.83738 0.93290 0.95775 1.21552 0.92249 1.50193 0.93298 0.91758 1.25988 0.96860 0.94656 1.02446 1.70098 1.02065 1.51346 1.33955 0.85307 0.77510 0.78536 0.78773 1.19869 1.20655 1.18717 1.21072 0.94609 0.97244 0.97443 1.21401 0.94177 0.98620 1.08683 0.91769 0.91949 0.88267 0.91491 0.91227 0.84596 0.84212 0.90361 0.90712 0.92139 0.93012 0.93516 0.92525 0.96586 0.85038 0.98358 1.02306 0.92630 0.84768 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 71.98 0.74 -0.65 16 2 C 0.05 0.59 5.46 71.98 0.39 0.99 16 3 O -0.33 -6.76 10.14 -92.34 -0.94 -7.69 16 4 C 0.11 2.32 6.69 22.51 0.15 2.47 16 5 C -0.16 -3.43 9.99 22.37 0.22 -3.21 16 6 C -0.08 -1.60 7.93 22.25 0.18 -1.43 16 7 C -0.12 -2.51 4.72 -19.85 -0.09 -2.60 16 8 C -0.07 -1.48 4.84 29.85 0.14 -1.34 16 9 C -0.07 -1.90 2.52 -10.79 -0.03 -1.93 16 10 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 11 C -0.13 -3.64 8.63 71.98 0.62 -3.02 16 12 C 0.06 2.27 5.07 86.30 0.44 2.71 16 13 N -0.69 -29.99 5.95 -517.93 -3.08 -33.07 16 14 C 0.21 11.41 5.44 85.56 0.47 11.87 16 15 C -0.53 -31.06 9.32 25.60 0.24 -30.82 16 16 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 17 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 18 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 19 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 C -0.09 -1.75 9.69 22.25 0.22 -1.54 16 24 C -0.21 -4.10 9.04 22.37 0.20 -3.90 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 29 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 30 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.14 2.50 8.02 -2.91 -0.02 2.47 16 32 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 33 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.06 1.48 6.25 -2.39 -0.01 1.46 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.49 7.75 -2.39 -0.02 1.48 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.33 13.87 8.72 -89.69 -0.78 13.09 16 40 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.14 2.12 6.30 -2.91 -0.02 2.10 16 Total: -1.00 -66.78 359.36 2.82 -63.96 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.17 Total: 18.91 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 4.35 Total: -32.00 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -2.79 Total: -90.01 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.94 Total: -7.69 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.78 2.82 -63.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.524 kcal (2) G-P(sol) polarization free energy of solvation -66.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds