Wall clock time and date at job start Mon Mar 30 2020 02:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38749 * 120.05570 * 0.02562 * 4 3 2 6 6 C 1.38129 * 119.94051 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.05835 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.94447 * 180.02562 * 7 6 5 9 9 N 1.46909 * 109.46917 * 259.99567 * 8 7 6 10 10 C 1.46899 * 110.99816 * 180.02562 * 9 8 7 11 11 C 1.53010 * 109.46575 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46538 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46484 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00522 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99583 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99952 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99827 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47021 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47132 * 119.99945 * 17 15 13 20 20 H 1.48494 * 109.46904 * 240.00043 * 17 15 13 21 21 C 1.38243 * 120.11105 * 359.97438 * 7 6 5 22 22 C 1.50704 * 119.97200 * 180.02562 * 21 7 6 23 23 C 1.38170 * 120.05353 * 359.77103 * 21 7 6 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.07997 * 120.03240 * 0.02562 * 5 4 3 30 30 H 1.08006 * 119.96622 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47166 * 19.98897 * 8 7 6 32 32 H 1.08996 * 109.47487 * 139.99678 * 8 7 6 33 33 H 1.00901 * 110.99708 * 303.95798 * 9 8 7 34 34 H 1.08994 * 109.47236 * 299.99224 * 10 9 8 35 35 H 1.08991 * 109.47050 * 60.00344 * 10 9 8 36 36 H 1.09004 * 109.46770 * 299.99628 * 11 10 9 37 37 H 1.08998 * 109.46887 * 60.00113 * 11 10 9 38 38 H 1.09004 * 109.47228 * 299.99277 * 12 11 10 39 39 H 1.08997 * 109.47715 * 59.99909 * 12 11 10 40 40 H 0.97001 * 119.99856 * 180.02562 * 16 15 13 41 41 H 1.08992 * 109.47122 * 90.00158 * 22 21 7 42 42 H 1.09004 * 109.46887 * 210.00054 * 22 21 7 43 43 H 1.09000 * 109.46738 * 330.00069 * 22 21 7 44 44 H 1.08007 * 120.02501 * 180.25306 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4259 -0.0016 6 6 5.5689 0.6096 -0.0016 7 6 6.0961 1.8880 -0.0011 8 6 7.5901 2.0855 -0.0017 9 7 8.0447 2.3874 1.3623 10 6 9.4995 2.5872 1.4002 11 6 9.9343 2.8981 2.8339 12 6 11.4495 3.1068 2.8732 13 6 11.8778 3.4125 4.2854 14 1 11.1428 3.4542 5.0757 15 6 13.2081 3.6389 4.5686 16 7 14.1031 3.5877 3.6064 17 14 13.7390 4.0185 6.3189 18 1 12.5497 4.0172 7.2081 19 1 14.7017 2.9858 6.7792 20 1 14.3876 5.3537 6.3608 21 6 5.2551 2.9851 -0.0011 22 6 5.8331 4.3769 -0.0012 23 6 3.8849 2.8067 -0.0064 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7886 -0.5727 -0.0024 30 1 6.2280 -0.2460 -0.0029 31 1 8.0767 1.1759 -0.3538 32 1 7.8469 2.9139 -0.6619 33 1 7.5599 3.1897 1.7357 34 1 9.9997 1.6813 1.0577 35 1 9.7690 3.4192 0.7498 36 1 9.4341 3.8039 3.1768 37 1 9.6648 2.0657 3.4839 38 1 11.9500 2.2013 2.5301 39 1 11.7187 3.9393 2.2233 40 1 15.0391 3.7466 3.8057 41 1 5.9724 4.7124 -1.0287 42 1 5.1505 5.0538 0.5127 43 1 6.7943 4.3710 0.5127 44 1 3.2283 3.6642 -0.0106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594924665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:11 Heat of formation + Delta-G solvation = -40.436816 kcal Electronic energy + Delta-G solvation = -20414.110787 eV Core-core repulsion = 17330.572068 eV Total energy + Delta-G solvation = -3083.538719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43462 -38.45702 -36.11306 -33.65154 -32.66452 -32.36700 -31.41036 -29.69762 -27.51526 -26.33291 -24.32245 -23.79989 -22.21111 -22.03716 -20.60957 -19.97499 -18.03509 -16.57737 -16.39070 -16.27815 -15.81067 -15.09413 -14.66579 -14.42018 -14.29925 -13.93350 -13.68126 -13.54240 -13.37997 -13.21058 -12.89632 -12.61350 -12.28374 -12.12241 -11.93493 -11.86196 -11.59425 -11.39697 -11.14045 -10.90149 -10.86419 -10.80247 -10.54703 -10.44350 -9.66870 -9.32928 -9.02283 -8.89589 -8.32395 -8.29692 -8.03257 -5.97209 -3.98969 1.20542 1.31920 2.94140 3.33116 3.40387 3.45237 3.57284 4.47089 4.53672 4.55299 4.59785 4.69538 4.75900 4.84970 4.91924 5.01338 5.12440 5.20929 5.29979 5.38651 5.40037 5.48370 5.49482 5.60547 5.64167 5.72929 5.79507 5.85945 5.93354 6.01177 6.19236 6.29422 6.34757 6.58144 6.66370 6.75033 6.79296 7.16797 7.24207 7.36384 7.65136 7.71987 7.86791 8.03588 8.47098 9.08525 9.64889 11.14258 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034143 B = 0.002390 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.885872 B =11714.822959 C =11891.322631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.128 3.872 5 C -0.215 4.215 6 C -0.058 4.058 7 C -0.112 4.112 8 C 0.099 3.901 9 N -0.686 5.686 10 C 0.058 3.942 11 C -0.107 4.107 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.054 3.946 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.040 4.040 22 C -0.120 4.120 23 C -0.154 4.154 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.337 0.663 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.259 0.741 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.886 -5.444 -11.197 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.083 3.917 5 C -0.233 4.233 6 C -0.076 4.076 7 C -0.113 4.113 8 C -0.030 4.030 9 N -0.318 5.318 10 C -0.071 4.071 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.041 4.041 22 C -0.176 4.176 23 C -0.172 4.172 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.156 0.844 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.808 -5.947 -11.042 27.798 hybrid contribution 0.560 0.738 0.524 1.064 sum -24.248 -5.209 -10.518 26.940 Atomic orbital electron populations 1.21775 0.92820 1.02818 1.03493 1.22762 0.95766 0.82114 1.01433 1.86048 1.19265 1.29180 1.88827 1.18922 0.82033 0.94126 0.96658 1.21178 0.94336 0.97823 1.09992 1.20826 0.94038 0.96800 0.95973 1.19640 0.95353 0.92628 1.03652 1.20809 0.90342 1.00982 0.90822 1.60677 1.06438 1.45066 1.19619 1.22161 0.85936 0.99715 0.99247 1.21626 0.99664 1.00148 0.93055 1.19076 0.88642 0.96930 0.96970 1.21305 0.92641 1.47355 0.94259 0.92610 1.25041 0.96870 0.95624 0.97094 1.69978 1.01593 1.50275 1.31775 0.86537 0.78610 0.77854 0.85019 1.19725 1.21040 1.21070 1.19568 0.92124 0.95555 0.96828 1.20893 1.01477 0.92624 1.02634 1.20204 0.94409 0.94766 1.07861 0.90403 0.91506 0.91579 0.91994 0.92113 0.85730 0.85601 0.90461 0.94498 0.84395 0.91400 0.95724 0.93690 0.92536 0.96562 0.96789 0.93123 0.90810 0.91078 0.91157 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.45 16 2 C 0.05 0.40 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.43 10.14 -19.44 -0.20 -3.63 16 4 C 0.13 1.48 6.69 -39.22 -0.26 1.22 16 5 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 6 C -0.06 -0.67 9.66 -39.60 -0.38 -1.05 16 7 C -0.11 -1.38 5.39 -104.60 -0.56 -1.94 16 8 C 0.10 1.27 5.04 -4.97 -0.03 1.25 16 9 N -0.69 -10.38 6.47 -115.05 -0.74 -11.12 16 10 C 0.06 1.01 5.69 -3.82 -0.02 0.99 16 11 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 17 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.04 -0.46 5.87 -104.64 -0.61 -1.08 16 22 C -0.12 -1.18 9.22 36.01 0.33 -0.85 16 23 C -0.15 -1.77 9.64 -39.43 -0.38 -2.15 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 28 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.12 1.08 6.30 -52.49 -0.33 0.74 16 30 H 0.13 1.29 8.03 -52.48 -0.42 0.87 16 31 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 32 H 0.04 0.45 7.27 -51.93 -0.38 0.08 16 33 H 0.34 4.90 6.97 -39.29 -0.27 4.63 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 43 H 0.07 0.75 5.26 -51.93 -0.27 0.47 16 44 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -31.62 358.46 -9.71 -41.33 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.50 Total: -0.48 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -2.38 Total: -21.89 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.01 Total: -37.69 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.20 Total: -3.63 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.62 -9.71 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594924665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.890 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds