Wall clock time and date at job start Mon Mar 30 2020 02:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 111.00302 * 2 1 4 4 C 1.53007 * 109.46595 * 293.95458 * 3 2 1 5 5 C 1.52999 * 109.46482 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46896 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99545 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00133 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99898 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99932 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47193 * 89.99964 * 10 8 6 12 12 H 1.48498 * 109.47067 * 210.00070 * 10 8 6 13 13 H 1.48506 * 109.47285 * 329.99904 * 10 8 6 14 14 C 1.46896 * 111.00160 * 123.95283 * 2 1 3 15 15 H 1.09007 * 109.47572 * 187.20979 * 14 2 1 16 16 C 1.53000 * 109.47220 * 307.21218 * 14 2 1 17 17 O 1.42898 * 109.47528 * 66.73322 * 16 14 2 18 18 C 1.53007 * 109.47271 * 67.20816 * 14 2 1 19 19 C 1.50700 * 109.46704 * 65.00415 * 18 14 2 20 20 C 1.38236 * 119.99570 * 269.71973 * 19 18 14 21 21 C 1.38237 * 119.99766 * 180.32501 * 20 19 18 22 22 C 1.38231 * 120.00065 * 359.95591 * 21 20 19 23 23 C 1.38230 * 120.00038 * 0.02562 * 22 21 20 24 24 C 1.38230 * 120.00167 * 90.00539 * 19 18 14 25 25 H 1.08993 * 109.46878 * 305.21122 * 1 2 3 26 26 H 1.08996 * 109.47220 * 65.20956 * 1 2 3 27 27 H 1.08997 * 109.46810 * 185.20851 * 1 2 3 28 28 H 1.09003 * 109.46888 * 53.94947 * 3 2 1 29 29 H 1.08998 * 109.47081 * 173.95570 * 3 2 1 30 30 H 1.09003 * 109.47085 * 299.99368 * 4 3 2 31 31 H 1.09003 * 109.46978 * 59.99911 * 4 3 2 32 32 H 1.09003 * 109.47167 * 299.99591 * 5 4 3 33 33 H 1.09003 * 109.47364 * 60.00420 * 5 4 3 34 34 H 0.96998 * 120.00091 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47727 * 186.73957 * 16 14 2 36 36 H 1.09004 * 109.46962 * 306.73399 * 16 14 2 37 37 H 0.96694 * 114.00262 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.46966 * 305.00281 * 18 14 2 39 39 H 1.09004 * 109.47152 * 185.00232 * 18 14 2 40 40 H 1.08006 * 120.00230 * 0.28771 * 20 19 18 41 41 H 1.08004 * 119.99667 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.99611 * 179.97438 * 22 21 20 43 43 H 1.08003 * 120.00227 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.00361 * 359.71632 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3184 5 6 2.1793 3.4859 -1.3181 6 6 1.8213 4.1614 -2.6168 7 1 1.2589 3.6255 -3.3671 8 6 2.2109 5.4639 -2.8467 9 7 1.8980 6.0535 -3.9799 10 14 3.1829 6.3910 -1.5487 11 1 4.6355 6.1790 -1.7727 12 1 2.8742 7.8406 -1.6406 13 1 2.8117 5.8904 -0.2007 14 6 1.9955 -0.7659 1.1376 15 1 3.0776 -0.6444 1.1879 16 6 1.3638 -0.2536 2.4335 17 8 -0.0330 -0.5549 2.4343 18 6 1.6566 -2.2469 0.9559 19 6 2.3784 -2.7826 -0.2536 20 6 1.7742 -2.7356 -1.4961 21 6 2.4336 -3.2331 -2.6045 22 6 3.6975 -3.7768 -2.4706 23 6 4.3018 -3.8234 -1.2283 24 6 3.6422 -3.3263 -0.1197 25 1 -0.3633 0.5925 0.8396 26 1 -0.3633 0.4309 -0.9329 27 1 -0.3633 -1.0234 0.0933 28 1 1.5611 1.9274 0.8309 29 1 3.0798 1.3444 0.1082 30 1 2.0659 1.5015 -2.1493 31 1 0.5472 2.0844 -1.4265 32 1 1.7446 4.0417 -0.4872 33 1 3.2636 3.4593 -1.2097 34 1 2.1717 6.9700 -4.1415 35 1 1.8403 -0.7373 3.2861 36 1 1.5028 0.8253 2.5036 37 1 -0.4990 -0.2578 3.2277 38 1 0.5814 -2.3591 0.8167 39 1 1.9683 -2.8021 1.8406 40 1 0.7868 -2.3107 -1.6007 41 1 1.9614 -3.1968 -3.5752 42 1 4.2124 -4.1658 -3.3366 43 1 5.2891 -4.2485 -1.1236 44 1 4.1142 -3.3631 0.8509 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595598765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:51 Heat of formation + Delta-G solvation = -30.100760 kcal Electronic energy + Delta-G solvation = -21815.585346 eV Core-core repulsion = 18732.494832 eV Total energy + Delta-G solvation = -3083.090514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.69568 -38.42316 -35.93890 -34.08346 -32.76548 -31.27729 -30.74388 -29.46169 -27.38617 -26.03430 -25.03247 -22.46510 -22.33973 -21.24492 -19.87773 -19.57426 -17.75525 -16.68222 -16.63684 -15.87845 -15.34794 -15.19944 -14.69072 -14.63252 -14.17131 -13.97734 -13.43650 -13.26837 -12.93498 -12.71879 -12.61505 -12.51384 -12.08949 -11.95094 -11.65678 -11.47217 -11.27650 -11.12120 -10.93154 -10.83768 -10.66890 -10.57439 -10.06658 -9.85804 -9.57271 -9.51537 -9.12038 -8.76661 -8.51762 -8.49317 -7.89360 -5.99763 -3.96902 1.50187 1.56940 3.32818 3.39673 3.43328 3.91944 4.00338 4.31862 4.48733 4.73867 4.94181 4.97569 5.09430 5.16577 5.20992 5.28165 5.33665 5.34957 5.51635 5.56346 5.65083 5.67149 5.78284 5.83067 5.99299 6.03042 6.10768 6.20362 6.21967 6.25453 6.44083 6.58386 6.64109 6.66006 6.67658 6.81654 6.99014 7.15774 7.35770 7.39089 7.43469 7.46963 7.54925 7.85692 8.60507 9.06391 9.63166 11.14000 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.004368 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.085213 B = 6408.067049 C = 7399.400065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.526 5.526 3 C 0.053 3.947 4 C -0.095 4.095 5 C -0.013 4.013 6 C -0.516 4.516 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.906 5.906 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.267 1.267 14 C 0.090 3.910 15 H 0.090 0.910 16 C 0.043 3.957 17 O -0.559 6.559 18 C -0.067 4.067 19 C -0.065 4.065 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.125 4.125 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.011 0.989 33 H 0.009 0.991 34 H 0.262 0.738 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.370 0.630 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 -19.808 13.076 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.249 5.249 3 C -0.074 4.074 4 C -0.133 4.133 5 C -0.051 4.051 6 C -0.554 4.554 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.545 5.545 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.192 1.192 14 C -0.019 4.019 15 H 0.108 0.892 16 C -0.037 4.037 17 O -0.365 6.365 18 C -0.105 4.105 19 C -0.065 4.065 20 C -0.106 4.106 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.143 4.143 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.216 0.784 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.806 -20.127 11.955 23.424 hybrid contribution 0.300 1.418 1.859 2.357 sum 1.106 -18.709 13.814 23.282 Atomic orbital electron populations 1.22508 0.86989 1.01658 1.00746 1.62180 1.08591 1.14208 1.39947 1.22341 0.99125 0.87042 0.98889 1.21432 1.00509 0.96626 0.94712 1.19553 0.95594 0.92386 0.97555 1.21158 1.35350 0.97761 1.01116 0.91050 1.25037 0.95743 0.97541 0.95261 1.69921 1.47233 1.13225 1.24111 0.86773 0.80681 0.78879 0.82888 1.20331 1.21466 1.19173 1.21881 0.98851 0.93678 0.87484 0.89222 1.22960 0.82338 0.99329 0.99045 1.86703 1.20689 1.84048 1.45020 1.20573 1.01020 0.93856 0.95029 1.19719 0.94417 0.97222 0.95160 1.21002 1.00270 0.97410 0.91885 1.21157 0.95271 0.98728 0.98690 1.21070 0.95686 1.00690 0.97231 1.21023 0.99579 1.00728 0.93004 1.20969 0.94930 0.99984 0.98439 0.93954 0.92103 0.91821 0.95602 0.91736 0.92115 0.92856 0.97030 0.97229 0.92832 0.93759 0.93351 0.78356 0.89883 0.91399 0.86100 0.86407 0.86673 0.86710 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 7.62 60.06 0.46 0.86 16 2 N -0.53 -7.59 4.10 -234.88 -0.96 -8.55 16 3 C 0.05 0.89 4.56 -3.82 -0.02 0.88 16 4 C -0.09 -1.96 5.07 -26.73 -0.14 -2.09 16 5 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 6 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 7 H 0.07 2.25 7.99 -52.48 -0.42 1.84 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 10 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 14 C 0.09 1.07 2.27 -67.71 -0.15 0.92 16 15 H 0.09 1.07 7.91 -51.93 -0.41 0.66 16 16 C 0.04 0.43 6.29 37.16 0.23 0.67 16 17 O -0.56 -5.46 9.26 -35.23 -0.33 -5.79 16 18 C -0.07 -0.73 4.47 -27.88 -0.12 -0.86 16 19 C -0.07 -0.79 4.95 -104.63 -0.52 -1.31 16 20 C -0.09 -1.13 9.32 -39.58 -0.37 -1.50 16 21 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 22 C -0.13 -1.49 10.05 -39.59 -0.40 -1.89 16 23 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 24 C -0.13 -1.43 9.70 -39.58 -0.38 -1.81 16 25 H 0.04 0.60 5.99 -51.93 -0.31 0.29 16 26 H 0.06 0.93 6.72 -51.93 -0.35 0.58 16 27 H 0.06 0.83 5.80 -51.93 -0.30 0.53 16 28 H 0.03 0.43 6.90 -51.93 -0.36 0.07 16 29 H 0.06 1.07 7.92 -51.93 -0.41 0.66 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.11 6.67 -51.93 -0.35 0.76 16 32 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 33 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.54 6.70 -51.93 -0.35 0.19 16 37 H 0.37 2.21 9.12 45.56 0.42 2.62 16 38 H 0.08 0.96 5.74 -51.93 -0.30 0.67 16 39 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 43 H 0.11 1.04 8.06 -52.48 -0.42 0.61 16 44 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -32.44 344.29 -9.19 -41.63 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.45 Total: 1.65 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -2.75 Total: -23.89 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.19 Total: -36.30 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.33 Total: -5.79 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.44 -9.19 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595598765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.530 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds