Wall clock time and date at job start Mon Mar 30 2020 02:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30501 * 125.64854 * 2 1 4 4 C 1.34127 * 109.25611 * 180.02562 * 3 2 1 5 5 C 1.34672 * 108.01905 * 359.73187 * 4 3 2 6 6 N 1.35042 * 125.65067 * 180.02562 * 2 1 3 7 7 C 1.46502 * 126.39813 * 359.96071 * 6 2 1 8 8 C 1.52994 * 109.47045 * 85.00279 * 7 6 2 9 9 C 1.53002 * 109.47274 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47055 * 179.97438 * 9 8 7 11 11 C 1.46847 * 111.00144 * 66.04768 * 10 9 8 12 12 C 1.53044 * 109.51335 * 185.83239 * 11 10 9 13 13 C 1.53117 * 109.27792 * 300.82256 * 12 11 10 14 14 C 1.53127 * 109.15989 * 57.65607 * 13 12 11 15 15 H 1.08997 * 109.50037 * 62.28538 * 14 13 12 16 16 C 1.50694 * 109.50110 * 182.36245 * 14 13 12 17 17 H 1.08002 * 119.99775 * 120.00089 * 16 14 13 18 18 C 1.37877 * 120.00467 * 300.00260 * 16 14 13 19 19 N 1.31512 * 119.99474 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00189 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47124 * 89.99729 * 20 18 16 22 22 H 1.48500 * 109.46950 * 209.99972 * 20 18 16 23 23 H 1.48496 * 109.47052 * 329.99362 * 20 18 16 24 24 C 1.46830 * 110.98168 * 190.26186 * 10 9 8 25 25 H 1.08997 * 109.47069 * 269.95105 * 1 2 3 26 26 H 1.09001 * 109.47347 * 29.95962 * 1 2 3 27 27 H 1.08999 * 109.46972 * 149.96039 * 1 2 3 28 28 H 1.07991 * 125.98658 * 179.97438 * 4 3 2 29 29 H 1.07999 * 126.59345 * 180.28113 * 5 4 3 30 30 H 1.08999 * 109.47104 * 325.00186 * 7 6 2 31 31 H 1.08996 * 109.47185 * 205.00396 * 7 6 2 32 32 H 1.08999 * 109.47245 * 59.99993 * 8 7 6 33 33 H 1.09006 * 109.47175 * 300.00180 * 8 7 6 34 34 H 1.08999 * 109.47028 * 59.99813 * 9 8 7 35 35 H 1.08996 * 109.47036 * 299.99606 * 9 8 7 36 36 H 1.09002 * 109.46448 * 65.81961 * 11 10 9 37 37 H 1.08994 * 109.45958 * 305.84326 * 11 10 9 38 38 H 1.09001 * 109.49858 * 60.76701 * 12 11 10 39 39 H 1.09002 * 109.49779 * 180.84687 * 12 11 10 40 40 H 1.08997 * 109.52073 * 177.56286 * 13 12 11 41 41 H 1.08998 * 109.52156 * 297.68928 * 13 12 11 42 42 H 0.97004 * 120.00010 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.46742 * 54.13906 * 24 10 9 44 44 H 1.09004 * 109.45381 * 294.16241 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5544 0.6819 -0.0006 5 6 3.5926 -0.6642 0.0051 6 7 2.2941 -1.0973 -0.0005 7 6 1.8426 -2.4910 -0.0003 8 6 1.5651 -2.9374 -1.4371 9 6 1.0929 -4.3927 -1.4369 10 7 0.8259 -4.8210 -2.8165 11 6 2.0637 -4.8555 -3.6058 12 6 1.7297 -5.1631 -5.0673 13 6 1.0125 -6.5136 -5.1485 14 6 -0.2473 -6.4666 -4.2793 15 1 -0.9268 -5.7063 -4.6642 16 6 -0.9282 -7.8107 -4.3075 17 1 -1.0710 -8.3630 -3.3905 18 6 -1.3690 -8.3353 -5.5040 19 7 -1.1955 -7.6625 -6.6206 20 14 -2.2137 -10.0010 -5.5387 21 1 -3.6771 -9.8176 -5.3653 22 1 -1.9487 -10.6633 -6.8412 23 1 -1.6867 -10.8464 -4.4375 24 6 0.1440 -6.1212 -2.8407 25 1 -0.3633 -0.0009 1.0276 26 1 -0.3634 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5144 28 1 4.4097 1.3412 -0.0011 29 1 4.4776 -1.2832 0.0104 30 1 0.9301 -2.5772 0.5896 31 1 2.6168 -3.1237 0.4336 32 1 2.4776 -2.8512 -2.0271 33 1 0.7908 -2.3046 -1.8711 34 1 0.1803 -4.4785 -0.8471 35 1 1.8669 -5.0257 -1.0030 36 1 2.7233 -5.6295 -3.2133 37 1 2.5615 -3.8879 -3.5429 38 1 1.0813 -4.3822 -5.4645 39 1 2.6499 -5.2035 -5.6501 40 1 0.7343 -6.7166 -6.1827 41 1 1.6755 -7.3003 -4.7885 42 1 -1.5059 -8.0314 -7.4623 43 1 -0.7521 -6.0730 -2.2222 44 1 0.8128 -6.8892 -2.4519 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595620691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:36 Heat of formation + Delta-G solvation = 29.256368 kcal Electronic energy + Delta-G solvation = -21493.582271 eV Core-core repulsion = 18445.358426 eV Total energy + Delta-G solvation = -3048.223845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.98841 -39.92815 -36.77486 -35.25125 -33.66068 -32.58291 -31.82748 -31.14400 -27.82228 -26.95216 -26.66308 -24.13429 -23.40090 -22.26727 -21.88379 -20.61325 -20.35137 -18.46773 -17.91460 -16.77469 -16.59263 -16.44927 -16.11371 -15.50570 -15.21512 -15.01348 -14.78592 -14.50696 -14.30636 -14.09233 -13.86004 -13.69822 -13.39735 -13.18351 -13.07966 -12.89013 -12.81984 -12.72854 -12.52509 -12.37173 -11.92500 -11.73001 -11.60430 -11.38511 -10.92224 -10.86134 -10.65624 -10.51804 -10.37597 -9.24676 -9.13000 -8.07906 -6.22222 1.13300 1.41517 1.42186 1.51967 1.89287 2.20355 2.42788 3.07181 3.19305 3.65648 3.73762 3.86811 4.03215 4.11924 4.19525 4.29085 4.34028 4.42415 4.49773 4.51111 4.59658 4.63749 4.70254 4.73017 4.74065 4.88656 4.89844 4.97089 5.00712 5.05932 5.09022 5.18635 5.26849 5.38683 5.43645 5.52451 5.63599 5.88764 5.96421 6.12186 6.21349 6.30113 6.39057 6.45791 6.91338 7.19203 7.46008 8.96630 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036561 B = 0.003080 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.661138 B = 9087.348263 C = 9330.642075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.191 3.809 3 N -0.538 5.538 4 C -0.059 4.059 5 C -0.055 4.055 6 N -0.453 5.453 7 C 0.107 3.893 8 C -0.118 4.118 9 C 0.060 3.940 10 N -0.551 5.551 11 C 0.067 3.933 12 C -0.113 4.113 13 C -0.104 4.104 14 C 0.052 3.948 15 H -0.005 1.005 16 C -0.535 4.535 17 H 0.053 0.947 18 C 0.013 3.987 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.267 1.267 24 C 0.083 3.917 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.201 0.799 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.028 0.972 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.260 0.740 43 H 0.061 0.939 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.258 10.109 14.187 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 N -0.258 5.258 4 C -0.206 4.206 5 C -0.188 4.188 6 N -0.135 5.135 7 C -0.015 4.015 8 C -0.156 4.156 9 C -0.068 4.068 10 N -0.276 5.276 11 C -0.061 4.061 12 C -0.151 4.151 13 C -0.143 4.143 14 C 0.033 3.967 15 H 0.013 0.987 16 C -0.574 4.574 17 H 0.071 0.929 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.779 3.221 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.045 4.045 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.198 0.802 29 H 0.218 0.782 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 7.591 11.089 13.797 19.260 hybrid contribution 0.387 -2.270 -0.283 2.320 sum 7.978 8.819 13.515 18.002 Atomic orbital electron populations 1.20308 0.83444 1.04639 1.04424 1.23805 0.96852 0.81558 1.04928 1.70196 1.03532 1.29989 1.22114 1.22664 0.94740 0.94068 1.09112 1.23178 0.87952 0.96786 1.10858 1.45611 1.06437 1.07963 1.53537 1.22007 1.03456 0.78015 0.97979 1.21807 1.01979 0.96052 0.95776 1.22006 1.00960 0.94715 0.89113 1.61876 1.23872 1.29349 1.12467 1.22032 0.90330 1.00341 0.93360 1.21596 0.99552 0.97686 0.96225 1.21463 0.96380 0.94372 1.02046 1.18589 0.92986 0.94169 0.90981 0.98679 1.21541 1.37893 1.04633 0.93339 0.92851 1.25733 0.96585 1.00864 0.95426 1.70042 1.47503 1.39445 0.98598 0.85623 0.78907 0.80111 0.77411 1.20163 1.21072 1.19181 1.21958 0.96551 0.87546 0.98404 0.88826 0.89549 0.89544 0.80175 0.78225 0.87177 0.86906 0.91749 0.91609 0.89801 0.93946 0.95428 0.89681 0.93421 0.91534 0.92607 0.95866 0.93131 0.92056 0.96478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.04 71.24 0.72 -0.42 16 2 C 0.19 4.31 7.90 138.13 1.09 5.40 16 3 N -0.54 -14.59 11.25 -188.13 -2.12 -16.71 16 4 C -0.06 -1.32 11.87 83.52 0.99 -0.33 16 5 C -0.05 -1.00 11.58 83.09 0.96 -0.04 16 6 N -0.45 -8.55 2.75 -514.29 -1.41 -9.96 16 7 C 0.11 1.47 5.68 86.38 0.49 1.96 16 8 C -0.12 -2.19 5.47 30.59 0.17 -2.02 16 9 C 0.06 1.36 4.96 86.30 0.43 1.79 16 10 N -0.55 -18.02 4.65 -896.40 -4.17 -22.19 16 11 C 0.07 2.11 5.30 86.33 0.46 2.56 16 12 C -0.11 -4.27 6.09 30.65 0.19 -4.08 16 13 C -0.10 -4.96 5.02 30.68 0.15 -4.80 16 14 C 0.05 2.58 2.26 -11.49 -0.03 2.55 16 15 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 16 C -0.54 -29.27 8.57 25.60 0.22 -29.05 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 18 C 0.01 0.70 5.30 84.65 0.45 1.14 16 19 N -0.92 -53.18 11.35 21.45 0.24 -52.93 16 20 Si 0.95 43.27 29.54 68.60 2.03 45.29 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C 0.08 3.31 4.68 86.33 0.40 3.71 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.09 1.23 7.36 -2.39 -0.02 1.21 16 28 H 0.18 3.16 8.06 -2.92 -0.02 3.14 16 29 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.11 1.18 7.92 -2.39 -0.02 1.16 16 31 H 0.11 1.12 8.13 -2.39 -0.02 1.10 16 32 H 0.06 1.30 6.44 -2.39 -0.02 1.28 16 33 H 0.07 1.44 7.67 -2.38 -0.02 1.42 16 34 H 0.08 1.74 7.98 -2.39 -0.02 1.72 16 35 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 2.26 6.22 -2.39 -0.01 2.25 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 3.03 6.15 -2.39 -0.01 3.02 16 41 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.06 2.39 8.01 -2.39 -0.02 2.37 16 44 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -67.74 346.90 2.20 -65.54 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.95 Total: 12.59 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 6.69 Total: -21.63 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -7.46 Total: -101.79 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.74 2.20 -65.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.794 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds