Wall clock time and date at job start Mon Mar 30 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.65213 * 2 1 4 4 C 1.34122 * 109.25990 * 180.29493 * 3 2 1 5 5 C 1.34669 * 108.02009 * 359.72592 * 4 3 2 6 6 N 1.35047 * 125.65279 * 179.82558 * 2 1 3 7 7 C 1.46494 * 126.39521 * 359.97438 * 6 2 1 8 8 C 1.53011 * 109.47200 * 84.71216 * 7 6 2 9 9 C 1.53001 * 109.46914 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.46644 * 180.02562 * 9 8 7 11 11 C 1.46848 * 110.99907 * 294.20975 * 10 9 8 12 12 C 1.53039 * 109.52511 * 174.16720 * 11 10 9 13 13 C 1.53119 * 109.27862 * 59.17216 * 12 11 10 14 14 C 1.53112 * 109.16252 * 302.34891 * 13 12 11 15 15 H 1.09003 * 109.50660 * 297.67117 * 14 13 12 16 16 C 1.50709 * 109.50255 * 177.59701 * 14 13 12 17 17 H 1.08001 * 119.99538 * 275.20093 * 16 14 13 18 18 C 1.37879 * 120.00053 * 95.20272 * 16 14 13 19 19 N 1.31509 * 119.99919 * 185.51301 * 18 16 14 20 20 Si 1.86800 * 120.00048 * 5.50717 * 18 16 14 21 21 H 1.48500 * 109.46703 * 84.78656 * 20 18 16 22 22 H 1.48493 * 109.47006 * 204.78356 * 20 18 16 23 23 H 1.48503 * 109.47365 * 324.78883 * 20 18 16 24 24 C 1.46846 * 111.00099 * 169.99930 * 10 9 8 25 25 H 1.09002 * 109.46981 * 270.17468 * 1 2 3 26 26 H 1.08999 * 109.47129 * 30.17389 * 1 2 3 27 27 H 1.09005 * 109.47095 * 150.17654 * 1 2 3 28 28 H 1.08003 * 125.99200 * 179.72784 * 4 3 2 29 29 H 1.07997 * 126.59049 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.47085 * 324.71453 * 7 6 2 31 31 H 1.09002 * 109.47299 * 204.70999 * 7 6 2 32 32 H 1.09000 * 109.46724 * 59.99610 * 8 7 6 33 33 H 1.09002 * 109.46817 * 300.00078 * 8 7 6 34 34 H 1.08992 * 109.47186 * 59.99942 * 9 8 7 35 35 H 1.08996 * 109.47033 * 299.99771 * 9 8 7 36 36 H 1.08991 * 109.46646 * 54.14560 * 11 10 9 37 37 H 1.09004 * 109.46062 * 294.17618 * 11 10 9 38 38 H 1.09011 * 109.49846 * 299.23458 * 12 11 10 39 39 H 1.08992 * 109.50695 * 179.12037 * 12 11 10 40 40 H 1.09000 * 109.51859 * 62.25666 * 13 12 11 41 41 H 1.09005 * 109.52237 * 182.37638 * 13 12 11 42 42 H 0.97003 * 120.00383 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.46333 * 65.82107 * 24 10 9 44 44 H 1.09000 * 109.45522 * 305.85141 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0033 7 6 1.8426 -2.4910 0.0081 8 6 1.5584 -2.9399 -1.4268 9 6 1.0874 -4.3957 -1.4218 10 7 0.8152 -4.8268 -2.7994 11 6 -0.3202 -4.0887 -3.3672 12 6 -0.4829 -4.4570 -4.8437 13 6 -0.7180 -5.9651 -4.9656 14 6 0.4555 -6.7102 -4.3238 15 1 1.3742 -6.4738 -4.8607 16 6 0.2038 -8.1948 -4.3870 17 1 -0.3885 -8.6751 -3.6221 18 6 0.7297 -8.9398 -5.4211 19 7 0.4218 -10.2131 -5.5371 20 14 1.8795 -8.1406 -6.6575 21 1 3.2658 -8.1548 -6.1252 22 1 1.8325 -8.8941 -7.9361 23 1 1.4544 -6.7375 -6.8937 24 6 0.5909 -6.2767 -2.8624 25 1 -0.3633 0.0031 1.0277 26 1 -0.3633 0.8884 -0.5165 27 1 -0.3633 -0.8916 -0.5111 28 1 4.4098 1.3412 -0.0123 29 1 4.4776 -1.2831 -0.0089 30 1 0.9328 -2.5761 0.6024 31 1 2.6189 -3.1230 0.4395 32 1 2.4682 -2.8547 -2.0210 33 1 0.7821 -2.3079 -1.8582 34 1 0.1779 -4.4812 -0.8274 35 1 1.8640 -5.0273 -0.9905 36 1 -0.1384 -3.0177 -3.2779 37 1 -1.2298 -4.3488 -2.8257 38 1 0.4212 -4.1844 -5.3884 39 1 -1.3352 -3.9208 -5.2608 40 1 -1.6427 -6.2320 -4.4539 41 1 -0.7924 -6.2382 -6.0182 42 1 0.7914 -10.7372 -6.2648 43 1 -0.3230 -6.5266 -2.3234 44 1 1.4346 -6.7948 -2.4065 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:39 Heat of formation + Delta-G solvation = 46.326122 kcal Electronic energy + Delta-G solvation = -21571.389891 eV Core-core repulsion = 18523.906246 eV Total energy + Delta-G solvation = -3047.483645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.23660 -38.67331 -35.76617 -33.70481 -32.30043 -31.91719 -30.51060 -30.19230 -27.11089 -25.80785 -25.10271 -22.96980 -21.91884 -21.50956 -20.58233 -19.86537 -18.83398 -17.29776 -16.85725 -15.77356 -15.64622 -15.38078 -14.54701 -14.34775 -14.14867 -13.79143 -13.59348 -13.52296 -13.17035 -13.07060 -12.78966 -12.55702 -12.52919 -12.43518 -12.17113 -11.89871 -11.55110 -11.21273 -11.03215 -10.84155 -10.64744 -10.24342 -10.10786 -9.86160 -9.75887 -9.57609 -9.32726 -8.97909 -8.53138 -8.49267 -7.91551 -6.10777 -4.10443 1.88377 2.58896 3.00641 3.29346 3.37463 3.41443 4.14126 4.31897 4.36261 4.41328 4.61682 4.82725 4.91164 5.01675 5.12668 5.18908 5.22200 5.26073 5.31265 5.43270 5.52043 5.53141 5.60153 5.67247 5.79262 5.84333 5.95129 6.05157 6.12471 6.18035 6.26885 6.34959 6.45057 6.61938 6.62741 6.78149 6.87351 7.02895 7.25480 7.41259 7.51776 7.54484 7.82462 7.96414 8.49356 8.93678 9.53059 11.02430 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.003366 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.340255 B = 8316.536668 C = 8507.815977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.203 3.797 3 N -0.496 5.496 4 C -0.033 4.033 5 C -0.056 4.056 6 N -0.452 5.452 7 C 0.103 3.897 8 C -0.132 4.132 9 C 0.059 3.941 10 N -0.542 5.542 11 C 0.060 3.940 12 C -0.121 4.121 13 C -0.112 4.112 14 C 0.021 3.979 15 H 0.039 0.961 16 C -0.514 4.514 17 H 0.070 0.930 18 C 0.072 3.928 19 N -0.901 5.901 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.263 1.263 24 C 0.073 3.927 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.264 0.736 43 H 0.024 0.976 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 17.327 10.904 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 N -0.216 5.216 4 C -0.181 4.181 5 C -0.189 4.189 6 N -0.134 5.134 7 C -0.020 4.020 8 C -0.170 4.170 9 C -0.070 4.070 10 N -0.267 5.267 11 C -0.067 4.067 12 C -0.159 4.159 13 C -0.151 4.151 14 C 0.001 3.999 15 H 0.057 0.943 16 C -0.552 4.552 17 H 0.089 0.911 18 C -0.129 4.129 19 N -0.539 5.539 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.188 1.188 24 C -0.054 4.054 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.185 0.815 29 H 0.190 0.810 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.163 17.903 10.524 20.879 hybrid contribution 0.376 -0.839 -0.242 0.951 sum 2.539 17.063 10.282 20.083 Atomic orbital electron populations 1.20201 0.85150 1.04121 1.03367 1.23282 0.95690 0.81460 1.05438 1.70226 1.02328 1.28445 1.20596 1.22259 0.94759 0.92821 1.08223 1.22728 0.87184 0.96878 1.12125 1.45469 1.06480 1.07492 1.53990 1.21937 1.01876 0.78939 0.99226 1.21998 1.03266 0.97179 0.94561 1.21934 0.99740 0.94425 0.90926 1.62021 1.40345 1.07086 1.17251 1.22049 0.91372 0.97152 0.96176 1.21686 1.00690 0.98632 0.94877 1.21870 1.00386 0.91925 1.00881 1.19149 0.94456 0.95436 0.90827 0.94277 1.20956 1.33294 0.90230 1.10743 0.91139 1.25051 0.96019 0.94648 0.97231 1.69909 1.44323 1.07305 1.32355 0.86829 0.81809 0.79960 0.80768 1.20183 1.21768 1.18785 1.22271 0.99097 0.83746 1.00256 0.90335 0.89225 0.90731 0.81494 0.80966 0.89079 0.88718 0.90264 0.91115 0.95086 0.90661 0.91981 0.95502 0.92039 0.92896 0.93232 0.92931 0.92640 0.95742 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.04 36.00 0.36 -0.20 16 2 C 0.20 2.32 7.90 -155.41 -1.23 1.10 16 3 N -0.50 -6.66 11.25 -10.82 -0.12 -6.78 16 4 C -0.03 -0.37 11.87 -17.82 -0.21 -0.59 16 5 C -0.06 -0.57 11.58 -16.56 -0.19 -0.76 16 6 N -0.45 -4.64 2.75 -113.90 -0.31 -4.95 16 7 C 0.10 0.84 5.68 -4.04 -0.02 0.82 16 8 C -0.13 -1.33 5.47 -26.72 -0.15 -1.47 16 9 C 0.06 0.71 4.96 -3.82 -0.02 0.69 16 10 N -0.54 -8.71 4.66 -234.68 -1.09 -9.81 16 11 C 0.06 0.91 5.29 -3.83 -0.02 0.89 16 12 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 13 C -0.11 -2.31 5.27 -26.61 -0.14 -2.45 16 14 C 0.02 0.47 1.94 -91.69 -0.18 0.29 16 15 H 0.04 0.93 5.26 -51.93 -0.27 0.66 16 16 C -0.51 -14.01 8.86 -34.44 -0.31 -14.31 16 17 H 0.07 2.09 8.06 -52.49 -0.42 1.66 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 20 Si 0.88 21.45 27.01 -169.99 -4.59 16.86 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.26 -6.19 6.80 56.52 0.38 -5.81 16 24 C 0.07 1.41 4.72 -3.84 -0.02 1.40 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.52 7.34 -51.93 -0.38 0.14 16 28 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.09 0.62 7.94 -51.93 -0.41 0.21 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.75 5.92 -51.93 -0.31 0.44 16 34 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 36 H 0.06 0.81 6.21 -51.93 -0.32 0.49 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 1.32 8.01 -51.93 -0.42 0.90 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -31.95 346.47 -10.10 -42.05 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.60 Total: -1.35 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -2.38 Total: -14.86 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.75 Total: -47.92 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.59 Total: 16.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.95 -10.10 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.378 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds