Wall clock time and date at job start Mon Mar 30 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.65213 * 2 1 4 4 C 1.34122 * 109.25990 * 180.29493 * 3 2 1 5 5 C 1.34669 * 108.02009 * 359.72592 * 4 3 2 6 6 N 1.35047 * 125.65279 * 179.82558 * 2 1 3 7 7 C 1.46494 * 126.39521 * 359.97438 * 6 2 1 8 8 C 1.53011 * 109.47200 * 84.71216 * 7 6 2 9 9 C 1.53001 * 109.46914 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.46644 * 180.02562 * 9 8 7 11 11 C 1.46848 * 110.99907 * 294.20975 * 10 9 8 12 12 C 1.53039 * 109.52511 * 174.16720 * 11 10 9 13 13 C 1.53119 * 109.27862 * 59.17216 * 12 11 10 14 14 C 1.53112 * 109.16252 * 302.34891 * 13 12 11 15 15 H 1.09003 * 109.50660 * 297.67117 * 14 13 12 16 16 C 1.50709 * 109.50255 * 177.59701 * 14 13 12 17 17 H 1.08001 * 119.99538 * 275.20093 * 16 14 13 18 18 C 1.37879 * 120.00053 * 95.20272 * 16 14 13 19 19 N 1.31509 * 119.99919 * 185.51301 * 18 16 14 20 20 Si 1.86800 * 120.00048 * 5.50717 * 18 16 14 21 21 H 1.48500 * 109.46703 * 84.78656 * 20 18 16 22 22 H 1.48493 * 109.47006 * 204.78356 * 20 18 16 23 23 H 1.48503 * 109.47365 * 324.78883 * 20 18 16 24 24 C 1.46846 * 111.00099 * 169.99930 * 10 9 8 25 25 H 1.09002 * 109.46981 * 270.17468 * 1 2 3 26 26 H 1.08999 * 109.47129 * 30.17389 * 1 2 3 27 27 H 1.09005 * 109.47095 * 150.17654 * 1 2 3 28 28 H 1.08003 * 125.99200 * 179.72784 * 4 3 2 29 29 H 1.07997 * 126.59049 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.47085 * 324.71453 * 7 6 2 31 31 H 1.09002 * 109.47299 * 204.70999 * 7 6 2 32 32 H 1.09000 * 109.46724 * 59.99610 * 8 7 6 33 33 H 1.09002 * 109.46817 * 300.00078 * 8 7 6 34 34 H 1.08992 * 109.47186 * 59.99942 * 9 8 7 35 35 H 1.08996 * 109.47033 * 299.99771 * 9 8 7 36 36 H 1.08991 * 109.46646 * 54.14560 * 11 10 9 37 37 H 1.09004 * 109.46062 * 294.17618 * 11 10 9 38 38 H 1.09011 * 109.49846 * 299.23458 * 12 11 10 39 39 H 1.08992 * 109.50695 * 179.12037 * 12 11 10 40 40 H 1.09000 * 109.51859 * 62.25666 * 13 12 11 41 41 H 1.09005 * 109.52237 * 182.37638 * 13 12 11 42 42 H 0.97003 * 120.00383 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.46333 * 65.82107 * 24 10 9 44 44 H 1.09000 * 109.45522 * 305.85141 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0033 7 6 1.8426 -2.4910 0.0081 8 6 1.5584 -2.9399 -1.4268 9 6 1.0874 -4.3957 -1.4218 10 7 0.8152 -4.8268 -2.7994 11 6 -0.3202 -4.0887 -3.3672 12 6 -0.4829 -4.4570 -4.8437 13 6 -0.7180 -5.9651 -4.9656 14 6 0.4555 -6.7102 -4.3238 15 1 1.3742 -6.4738 -4.8607 16 6 0.2038 -8.1948 -4.3870 17 1 -0.3885 -8.6751 -3.6221 18 6 0.7297 -8.9398 -5.4211 19 7 0.4218 -10.2131 -5.5371 20 14 1.8795 -8.1406 -6.6575 21 1 3.2658 -8.1548 -6.1252 22 1 1.8325 -8.8941 -7.9361 23 1 1.4544 -6.7375 -6.8937 24 6 0.5909 -6.2767 -2.8624 25 1 -0.3633 0.0031 1.0277 26 1 -0.3633 0.8884 -0.5165 27 1 -0.3633 -0.8916 -0.5111 28 1 4.4098 1.3412 -0.0123 29 1 4.4776 -1.2831 -0.0089 30 1 0.9328 -2.5761 0.6024 31 1 2.6189 -3.1230 0.4395 32 1 2.4682 -2.8547 -2.0210 33 1 0.7821 -2.3079 -1.8582 34 1 0.1779 -4.4812 -0.8274 35 1 1.8640 -5.0273 -0.9905 36 1 -0.1384 -3.0177 -3.2779 37 1 -1.2298 -4.3488 -2.8257 38 1 0.4212 -4.1844 -5.3884 39 1 -1.3352 -3.9208 -5.2608 40 1 -1.6427 -6.2320 -4.4539 41 1 -0.7924 -6.2382 -6.0182 42 1 0.7914 -10.7372 -6.2648 43 1 -0.3230 -6.5266 -2.3234 44 1 1.4346 -6.7948 -2.4065 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595620692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:39 Heat of formation + Delta-G solvation = 27.060513 kcal Electronic energy + Delta-G solvation = -21572.225310 eV Core-core repulsion = 18523.906246 eV Total energy + Delta-G solvation = -3048.319064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.99391 -40.01090 -36.78932 -35.17754 -33.96528 -32.59296 -31.99656 -31.39429 -27.84367 -27.00139 -26.71068 -24.14810 -23.33899 -22.27961 -21.79395 -20.62811 -20.41593 -18.99572 -17.98598 -16.86960 -16.54509 -16.47094 -16.00205 -15.60001 -15.24507 -15.05751 -14.72480 -14.62690 -14.52247 -14.20763 -13.90369 -13.87932 -13.48034 -13.19531 -13.05202 -13.03266 -12.93992 -12.81735 -12.50302 -12.30586 -11.87185 -11.80365 -11.62954 -11.29313 -11.07957 -10.92915 -10.78050 -10.64555 -10.51317 -9.25548 -9.17074 -8.29650 -6.32679 1.12845 1.35341 1.36765 1.48224 1.88713 2.19699 2.35389 2.98271 3.10936 3.64496 3.72198 3.89262 4.02465 4.05565 4.12067 4.27134 4.30728 4.33795 4.45641 4.50225 4.51582 4.61649 4.68292 4.70434 4.72619 4.83613 4.86678 4.89407 4.96454 4.99881 5.08005 5.09168 5.20739 5.24836 5.27977 5.42693 5.56756 5.65590 5.76166 5.87592 6.15443 6.28526 6.34433 6.38792 6.75936 7.18416 7.33935 8.87349 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.003366 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.340255 B = 8316.536668 C = 8507.815977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.191 3.809 3 N -0.538 5.538 4 C -0.059 4.059 5 C -0.055 4.055 6 N -0.453 5.453 7 C 0.106 3.894 8 C -0.117 4.117 9 C 0.059 3.941 10 N -0.552 5.552 11 C 0.061 3.939 12 C -0.115 4.115 13 C -0.111 4.111 14 C 0.017 3.983 15 H 0.032 0.968 16 C -0.514 4.514 17 H 0.031 0.969 18 C 0.014 3.986 19 N -0.951 5.951 20 Si 0.942 3.058 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.248 1.248 24 C 0.085 3.915 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.180 0.820 29 H 0.198 0.802 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.031 0.969 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.035 0.965 42 H 0.265 0.735 43 H 0.017 0.983 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 19.441 11.426 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 N -0.258 5.258 4 C -0.206 4.206 5 C -0.188 4.188 6 N -0.136 5.136 7 C -0.016 4.016 8 C -0.155 4.155 9 C -0.069 4.069 10 N -0.276 5.276 11 C -0.066 4.066 12 C -0.153 4.153 13 C -0.149 4.149 14 C -0.002 4.002 15 H 0.050 0.950 16 C -0.553 4.553 17 H 0.049 0.951 18 C -0.183 4.183 19 N -0.591 5.591 20 Si 0.767 3.233 21 H -0.193 1.193 22 H -0.217 1.217 23 H -0.172 1.172 24 C -0.043 4.043 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.197 0.803 29 H 0.215 0.785 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.612 20.042 11.064 23.042 hybrid contribution 0.186 -1.517 -0.326 1.563 sum 2.798 18.526 10.738 21.595 Atomic orbital electron populations 1.20316 0.83225 1.04740 1.04445 1.23846 0.96918 0.81464 1.04893 1.70192 1.03454 1.30026 1.22131 1.22645 0.94794 0.94005 1.09110 1.23167 0.88035 0.96806 1.10828 1.45607 1.06390 1.07980 1.53585 1.22018 1.03394 0.78025 0.98171 1.21811 1.02398 0.95627 0.95703 1.21998 1.00587 0.95610 0.88693 1.61930 1.40824 1.04750 1.20123 1.22097 0.91262 0.98523 0.94729 1.21640 1.01624 0.95469 0.96587 1.21739 0.98950 0.94896 0.99348 1.19119 0.94929 0.92661 0.93484 0.94986 1.21272 1.31843 0.92924 1.09251 0.95089 1.25893 0.97849 0.95072 0.99509 1.70054 1.46323 1.09078 1.33663 0.85806 0.79792 0.79593 0.78122 1.19300 1.21675 1.17179 1.21903 0.98478 0.86427 0.97466 0.88991 0.89359 0.89314 0.80271 0.78472 0.87185 0.87133 0.91709 0.91152 0.93687 0.90246 0.89100 0.95045 0.92444 0.90261 0.93890 0.94625 0.92597 0.96525 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.04 71.24 0.72 -0.22 16 2 C 0.19 3.97 7.90 138.13 1.09 5.06 16 3 N -0.54 -13.88 11.25 -188.13 -2.12 -16.00 16 4 C -0.06 -1.27 11.87 83.52 0.99 -0.28 16 5 C -0.06 -1.00 11.58 83.09 0.96 -0.03 16 6 N -0.45 -8.04 2.75 -514.28 -1.41 -9.46 16 7 C 0.11 1.33 5.68 86.38 0.49 1.82 16 8 C -0.12 -1.93 5.47 30.60 0.17 -1.76 16 9 C 0.06 1.23 4.96 86.30 0.43 1.65 16 10 N -0.55 -16.21 4.66 -896.39 -4.17 -20.39 16 11 C 0.06 1.63 5.29 86.33 0.46 2.09 16 12 C -0.12 -3.55 6.09 30.65 0.19 -3.36 16 13 C -0.11 -4.47 5.27 30.67 0.16 -4.30 16 14 C 0.02 0.78 1.94 -11.49 -0.02 0.76 16 15 H 0.03 1.49 5.26 -2.39 -0.01 1.48 16 16 C -0.51 -28.80 8.86 25.60 0.23 -28.58 16 17 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 18 C 0.01 0.79 5.47 84.66 0.46 1.25 16 19 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 20 Si 0.94 44.48 27.01 68.60 1.85 46.34 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 23 H -0.25 -10.99 6.80 99.48 0.68 -10.31 16 24 C 0.08 3.21 4.72 86.32 0.41 3.61 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.09 0.93 7.34 -2.38 -0.02 0.91 16 28 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.11 1.02 7.94 -2.39 -0.02 1.00 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.19 5.92 -2.39 -0.01 1.17 16 34 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.08 1.59 7.99 -2.39 -0.02 1.58 16 36 H 0.09 1.95 6.21 -2.39 -0.01 1.94 16 37 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 2.33 8.01 -2.39 -0.02 2.31 16 Total: -1.00 -71.26 346.47 2.09 -69.17 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.92 Total: 11.45 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 6.73 Total: -22.29 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -7.41 Total: -104.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.85 Total: 46.34 kcal Total: -71.26 2.09 -69.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.231 kcal (2) G-P(sol) polarization free energy of solvation -71.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds