Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47213 * 2 1 4 4 C 1.53002 * 109.46852 * 240.00393 * 2 1 3 5 5 C 1.50697 * 109.47089 * 120.00434 * 2 1 3 6 6 C 1.35641 * 119.79665 * 74.99820 * 5 2 1 7 7 C 1.41987 * 118.60259 * 179.72224 * 6 5 2 8 8 N 1.31475 * 120.91837 * 180.29827 * 7 6 5 9 9 C 1.46504 * 119.99846 * 174.11824 * 8 7 6 10 10 C 1.52995 * 109.47327 * 114.83867 * 9 8 7 11 11 C 1.53004 * 109.47026 * 299.99812 * 10 9 8 12 12 C 1.53002 * 109.47326 * 59.99386 * 10 9 8 13 13 C 1.50692 * 109.47155 * 179.97438 * 10 9 8 14 14 H 1.08000 * 120.00216 * 354.80321 * 13 10 9 15 15 C 1.37882 * 120.00272 * 174.80640 * 13 10 9 16 16 N 1.31520 * 120.00129 * 199.08509 * 15 13 10 17 17 Si 1.86802 * 119.99814 * 19.07642 * 15 13 10 18 18 H 1.48490 * 109.46937 * 84.98375 * 17 15 13 19 19 H 1.48498 * 109.46843 * 204.98648 * 17 15 13 20 20 H 1.48500 * 109.47011 * 324.98198 * 17 15 13 21 21 N 1.38036 * 118.16195 * 0.27739 * 7 6 5 22 22 H 0.96992 * 120.30720 * 179.97438 * 21 7 6 23 23 C 1.35654 * 119.37579 * 359.97438 * 21 7 6 24 24 N 1.30410 * 121.41881 * 0.02562 * 23 21 7 25 25 H 1.08998 * 109.46804 * 300.00216 * 1 2 3 26 26 H 1.09000 * 109.47057 * 59.99628 * 1 2 3 27 27 H 1.08996 * 109.47098 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47226 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47413 * 300.00154 * 3 2 1 30 30 H 1.09005 * 109.47148 * 59.99845 * 3 2 1 31 31 H 1.09002 * 109.47195 * 299.99549 * 4 2 1 32 32 H 1.09000 * 109.47306 * 60.00132 * 4 2 1 33 33 H 1.09010 * 109.46874 * 180.02562 * 4 2 1 34 34 H 1.08004 * 120.69827 * 359.97438 * 6 5 2 35 35 H 1.09004 * 109.46683 * 234.83482 * 9 8 7 36 36 H 1.08995 * 109.46894 * 354.83379 * 9 8 7 37 37 H 1.08995 * 109.47128 * 67.72720 * 11 10 9 38 38 H 1.08997 * 109.47340 * 187.73014 * 11 10 9 39 39 H 1.09002 * 109.47060 * 307.73440 * 11 10 9 40 40 H 1.08999 * 109.46586 * 60.00235 * 12 10 9 41 41 H 1.09000 * 109.46992 * 180.02562 * 12 10 9 42 42 H 1.09003 * 109.47451 * 300.00257 * 12 10 9 43 43 H 0.96994 * 119.99468 * 179.97438 * 16 15 13 44 44 H 1.08000 * 119.29056 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.9698 -2.0637 1.3001 7 6 2.4557 -2.7073 2.4687 8 7 2.4224 -4.0167 2.5821 9 6 3.0448 -4.6679 3.7375 10 6 1.9659 -5.3504 4.5807 11 6 0.9599 -4.3045 5.0655 12 6 1.2429 -6.3987 3.7326 13 6 2.6061 -6.0207 5.7688 14 1 3.6818 -6.0377 5.8645 15 6 1.8188 -6.6125 6.7337 16 7 2.3146 -6.8594 7.9266 17 14 0.0478 -7.0632 6.3467 18 1 0.0074 -8.3980 5.6973 19 1 -0.7397 -7.1009 7.6052 20 1 -0.5322 -6.0490 5.4302 21 7 2.9643 -1.9202 3.4823 22 1 3.3042 -2.3273 4.2944 23 6 2.9843 -0.5722 3.3317 24 7 2.5325 -0.0023 2.2492 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2494 32 1 1.6767 -0.2073 -2.1393 33 1 3.1301 -0.7216 -1.2491 34 1 1.5627 -2.6397 0.4822 35 1 3.7615 -5.4131 3.3922 36 1 3.5598 -3.9211 4.3417 37 1 0.3992 -3.9179 4.2145 38 1 0.2720 -4.7636 5.7754 39 1 1.4918 -3.4867 5.5518 40 1 1.9596 -7.1438 3.3873 41 1 0.4740 -6.8846 4.3332 42 1 0.7798 -5.9142 2.8729 43 1 1.7606 -7.2753 8.6054 44 1 3.3829 0.0422 4.1254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596263118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = 45.150098 kcal Electronic energy + Delta-G solvation = -22192.296526 eV Core-core repulsion = 19144.761885 eV Total energy + Delta-G solvation = -3047.534641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.98585 -39.00931 -37.92807 -35.72548 -33.91815 -33.42951 -31.21834 -28.16003 -28.07295 -27.99967 -27.45682 -26.90271 -25.11518 -23.56389 -20.94752 -20.09449 -19.63496 -18.18498 -17.99178 -17.34806 -16.81641 -16.03647 -16.00307 -15.44395 -15.05522 -14.98282 -14.77125 -14.70526 -14.52170 -14.00897 -13.83679 -13.73344 -13.15477 -13.03514 -12.86522 -12.75330 -12.48154 -12.42588 -12.09533 -12.05917 -11.96032 -11.75713 -11.70631 -11.69670 -11.15102 -11.06556 -10.73487 -10.59430 -10.43662 -10.12700 -8.39838 -8.35333 -6.31484 -0.04118 1.05193 1.29287 1.34762 1.42394 1.99752 2.30311 2.74842 2.99573 3.19432 3.37491 3.94766 4.06507 4.14668 4.17001 4.27579 4.32581 4.35928 4.48686 4.64416 4.70714 4.79151 4.81273 4.83724 4.87374 4.95229 4.97036 5.03048 5.07896 5.10614 5.11966 5.15517 5.21505 5.27239 5.37378 5.46441 5.48116 5.55035 5.67280 5.73473 5.76645 6.12130 6.32315 6.70927 7.06547 7.22208 7.33665 8.80013 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031455 B = 0.004198 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.948286 B = 6668.339842 C = 6914.967527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.019 4.019 3 C -0.119 4.119 4 C -0.139 4.139 5 C 0.167 3.833 6 C -0.225 4.225 7 C 0.383 3.617 8 N -0.608 5.608 9 C 0.089 3.911 10 C 0.040 3.960 11 C -0.127 4.127 12 C -0.128 4.128 13 C -0.517 4.517 14 H 0.036 0.964 15 C 0.030 3.970 16 N -0.935 5.935 17 Si 0.925 3.075 18 H -0.285 1.285 19 H -0.306 1.306 20 H -0.220 1.220 21 N -0.661 5.661 22 H 0.421 0.579 23 C 0.386 3.614 24 N -0.566 5.566 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.144 0.856 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.025 0.975 42 H 0.053 0.947 43 H 0.265 0.735 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 18.657 -15.677 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.020 4.020 3 C -0.176 4.176 4 C -0.196 4.196 5 C 0.049 3.951 6 C -0.251 4.251 7 C 0.116 3.884 8 N -0.336 5.336 9 C -0.041 4.041 10 C 0.039 3.961 11 C -0.184 4.184 12 C -0.185 4.185 13 C -0.555 4.555 14 H 0.055 0.945 15 C -0.169 4.169 16 N -0.574 5.574 17 Si 0.755 3.245 18 H -0.213 1.213 19 H -0.235 1.235 20 H -0.145 1.145 21 N -0.290 5.290 22 H 0.262 0.738 23 C 0.100 3.900 24 N -0.288 5.288 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.220 18.548 -16.190 24.720 hybrid contribution 0.070 -1.678 1.667 2.366 sum -2.150 16.870 -14.523 22.364 Atomic orbital electron populations 1.21864 0.92454 1.02143 1.02719 1.19582 0.96228 0.96192 0.90031 1.21607 1.00624 0.93327 1.02072 1.21944 1.00933 1.00439 0.96291 1.20925 0.90323 0.89923 0.93976 1.21202 1.11171 0.94893 0.97824 1.20578 0.91102 0.88229 0.88496 1.73252 1.28561 1.05172 1.26602 1.21599 0.95811 0.96416 0.90286 1.18468 0.92818 0.92693 0.92118 1.22109 0.98714 0.98636 0.98962 1.22031 0.98790 0.98955 0.98712 1.21104 0.93276 1.36149 1.05010 0.94542 1.25625 1.02053 0.95317 0.93860 1.70120 1.39495 1.44078 1.03751 0.86676 0.81794 0.79577 0.76482 1.21258 1.23505 1.14465 1.44628 1.55589 1.08560 1.20175 0.73815 1.25867 0.87096 0.81162 0.95912 1.68085 1.21120 1.37765 1.01879 0.93131 0.89930 0.92919 0.93290 0.91343 0.92309 0.92423 0.90043 0.93039 0.83790 0.92766 0.95459 0.94506 0.94059 0.94072 0.94174 0.95677 0.92760 0.92646 0.74076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.40 71.98 0.60 -1.56 16 2 C -0.02 -0.34 0.87 -52.93 -0.05 -0.39 16 3 C -0.12 -1.84 7.82 71.98 0.56 -1.28 16 4 C -0.14 -2.15 8.08 71.98 0.58 -1.57 16 5 C 0.17 3.83 5.54 41.66 0.23 4.06 16 6 C -0.23 -6.11 9.04 22.60 0.20 -5.91 16 7 C 0.38 11.96 7.50 134.38 1.01 12.96 16 8 N -0.61 -22.90 9.20 -343.94 -3.17 -26.06 16 9 C 0.09 3.70 5.12 86.38 0.44 4.14 16 10 C 0.04 1.89 0.57 -52.93 -0.03 1.86 16 11 C -0.13 -5.54 7.53 71.98 0.54 -5.00 16 12 C -0.13 -5.85 7.68 71.98 0.55 -5.29 16 13 C -0.52 -29.09 8.60 25.60 0.22 -28.87 16 14 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 15 C 0.03 1.74 5.25 84.65 0.44 2.18 16 16 N -0.94 -57.90 13.96 21.45 0.30 -57.61 16 17 Si 0.92 45.48 22.95 68.60 1.57 47.06 16 18 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 19 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 20 H -0.22 -9.96 4.56 99.48 0.45 -9.51 16 21 N -0.66 -16.36 5.28 -195.28 -1.03 -17.39 16 22 H 0.42 10.45 6.40 -92.71 -0.59 9.85 16 23 C 0.39 7.07 12.40 180.09 2.23 9.30 16 24 N -0.57 -12.09 9.06 -187.46 -1.70 -13.79 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.93 8.08 -2.39 -0.02 0.91 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.99 7.86 -2.38 -0.02 0.98 16 31 H 0.06 0.96 6.71 -2.39 -0.02 0.94 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.14 3.84 6.72 -2.91 -0.02 3.82 16 35 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.03 1.05 5.58 -2.39 -0.01 1.04 16 37 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 38 H 0.04 1.89 3.83 -2.39 -0.01 1.88 16 39 H 0.04 1.67 8.13 -2.39 -0.02 1.65 16 40 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.02 1.16 2.74 -2.39 -0.01 1.15 16 42 H 0.05 2.32 7.60 -2.39 -0.02 2.30 16 43 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.24 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -69.82 334.61 3.67 -66.15 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.14 Total: 17.02 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 7.55 Total: -15.38 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -5.60 Total: -114.85 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.57 Total: 47.06 kcal Total: -69.82 3.67 -66.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596263118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.303 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds