Wall clock time and date at job start Mon Mar 30 2020 02:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46831 * 2 1 4 4 C 1.35900 * 116.99728 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05710 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94299 * 180.02562 * 5 4 3 7 7 C 1.38283 * 120.06027 * 359.97403 * 6 5 4 8 8 C 1.50693 * 119.94924 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47366 * 105.38474 * 8 7 6 10 10 C 1.46900 * 111.00088 * 288.21237 * 9 8 7 11 11 C 1.46898 * 111.00070 * 164.25621 * 9 8 7 12 12 H 1.09005 * 109.47267 * 310.00352 * 11 9 8 13 13 C 1.53000 * 109.47118 * 70.00195 * 11 9 8 14 14 C 1.50703 * 109.47483 * 190.00282 * 11 9 8 15 15 H 1.08002 * 119.99732 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00333 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99903 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00128 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46891 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47283 * 119.99461 * 18 16 14 21 21 H 1.48499 * 109.47187 * 240.00006 * 18 16 14 22 22 C 1.38251 * 120.11028 * 0.04805 * 7 6 5 23 23 C 1.50694 * 119.97360 * 179.97438 * 22 7 6 24 24 C 1.38168 * 120.05088 * 359.67410 * 22 7 6 25 25 H 1.08997 * 109.47348 * 59.99622 * 1 2 3 26 26 H 1.09003 * 109.46614 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47309 * 299.99333 * 1 2 3 28 28 H 1.08997 * 109.47348 * 120.00378 * 2 1 3 29 29 H 1.09007 * 109.47088 * 240.00601 * 2 1 3 30 30 H 1.08005 * 120.02954 * 0.02562 * 5 4 3 31 31 H 1.08006 * 119.97218 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47363 * 225.38963 * 8 7 6 33 33 H 1.09011 * 109.46939 * 345.38432 * 8 7 6 34 34 H 1.08992 * 109.47244 * 66.61006 * 10 9 8 35 35 H 1.08999 * 109.46830 * 186.61679 * 10 9 8 36 36 H 1.09005 * 109.46848 * 306.61139 * 10 9 8 37 37 H 1.08999 * 109.46843 * 299.99709 * 13 11 9 38 38 H 1.08996 * 109.47453 * 60.00155 * 13 11 9 39 39 H 1.09007 * 109.47108 * 180.02562 * 13 11 9 40 40 H 0.97005 * 119.99712 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.47196 * 84.62604 * 23 22 7 42 42 H 1.09000 * 109.47056 * 204.62604 * 23 22 7 43 43 H 1.09003 * 109.47153 * 324.62298 * 23 22 7 44 44 H 1.07997 * 120.02941 * 180.29526 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6096 0.0016 7 6 6.0962 1.8879 0.0022 8 6 7.5901 2.0855 0.0028 9 7 8.0279 2.5143 -1.3322 10 6 7.9441 1.4075 -2.2945 11 6 9.3867 3.0709 -1.2871 12 1 9.4485 3.8146 -0.4926 13 6 10.3890 1.9478 -1.0135 14 6 9.7079 3.7199 -2.6088 15 1 8.9760 3.7186 -3.4030 16 6 10.9364 4.3144 -2.8044 17 7 11.8278 4.3155 -1.8375 18 14 11.3347 5.1182 -4.4429 19 1 10.1723 4.9814 -5.3569 20 1 11.6302 6.5577 -4.2293 21 1 12.5184 4.4540 -5.0454 22 6 5.2551 2.9852 0.0027 23 6 5.8331 4.3768 0.0038 24 6 3.8850 2.8067 -0.0042 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 3.7886 -0.5728 -0.0003 31 1 6.2281 -0.2459 0.0020 32 1 7.8555 2.8484 0.7347 33 1 8.0806 1.1471 0.2620 34 1 6.8993 1.1379 -2.4480 35 1 8.3827 1.7169 -3.2432 36 1 8.4883 0.5465 -1.9063 37 1 10.1568 1.4785 -0.0575 38 1 10.3273 1.2041 -1.8079 39 1 11.3972 2.3609 -0.9796 40 1 12.6920 4.7341 -1.9750 41 1 6.0617 4.6762 -1.0190 42 1 5.1095 5.0704 0.4323 43 1 6.7461 4.3906 0.5992 44 1 3.2283 3.6641 -0.0087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596994546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:15 Heat of formation + Delta-G solvation = -32.536373 kcal Electronic energy + Delta-G solvation = -21784.256262 eV Core-core repulsion = 18701.060132 eV Total energy + Delta-G solvation = -3083.196130 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21212 -39.52791 -38.06013 -34.80116 -33.44932 -32.99553 -31.62910 -30.01344 -28.24985 -27.47150 -27.19370 -24.97448 -24.34064 -22.88822 -21.60888 -20.67820 -18.72306 -18.22350 -17.16556 -17.09167 -16.96441 -16.32318 -16.04958 -15.40149 -15.14407 -14.83761 -14.52064 -14.37695 -14.08027 -14.03947 -13.79519 -13.54968 -13.31252 -13.06257 -12.91358 -12.83201 -12.64297 -12.53384 -12.44429 -12.35009 -12.29386 -12.13139 -12.01199 -11.60915 -11.51228 -11.47789 -10.87674 -10.46522 -9.65579 -9.00990 -8.76740 -8.07705 -6.17627 0.45089 0.50879 1.42087 1.44703 1.55993 2.30319 2.44932 2.79239 3.21470 3.58175 3.88236 3.94647 4.07181 4.08799 4.19029 4.32831 4.39165 4.41091 4.45489 4.60636 4.69531 4.71116 4.80190 4.83179 4.85469 4.92043 4.94601 4.96775 5.01809 5.12978 5.18646 5.20773 5.22417 5.32390 5.44411 5.48859 5.56939 5.73452 5.82547 5.87679 5.90587 6.25407 6.52847 6.54517 6.78242 6.96515 7.51495 8.98238 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031885 B = 0.003619 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.955606 B = 7734.450419 C = 7894.467353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.333 6.333 4 C 0.121 3.879 5 C -0.214 4.214 6 C -0.075 4.075 7 C -0.119 4.119 8 C 0.101 3.899 9 N -0.532 5.532 10 C 0.046 3.954 11 C 0.217 3.783 12 H 0.008 0.992 13 C -0.158 4.158 14 C -0.508 4.508 15 H 0.054 0.946 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.955 3.045 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.030 4.030 23 C -0.103 4.103 24 C -0.168 4.168 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.023 0.977 38 H 0.032 0.968 39 H 0.060 0.940 40 H 0.260 0.740 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.514 -9.248 4.919 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.247 6.247 4 C 0.075 3.925 5 C -0.232 4.232 6 C -0.094 4.094 7 C -0.120 4.120 8 C -0.026 4.026 9 N -0.255 5.255 10 C -0.102 4.102 11 C 0.110 3.890 12 H 0.026 0.974 13 C -0.218 4.218 14 C -0.546 4.546 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.030 4.030 23 C -0.159 4.159 24 C -0.186 4.186 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.166 0.834 31 H 0.150 0.850 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.817 -8.669 4.792 21.265 hybrid contribution 1.402 -0.280 -0.488 1.511 sum -17.415 -8.950 4.304 20.047 Atomic orbital electron populations 1.21801 0.91425 1.04151 1.03147 1.23054 0.96907 0.80893 1.02172 1.86038 1.18684 1.31236 1.88785 1.19015 0.82598 0.94175 0.96683 1.21314 0.93646 0.98643 1.09624 1.20983 0.94863 0.96404 0.97131 1.19676 0.94860 0.93259 1.04162 1.20875 0.91249 0.98741 0.91782 1.62194 1.25927 1.31352 1.06037 1.22116 0.99774 0.91798 0.96550 1.19079 0.82698 0.91505 0.95705 0.97397 1.22223 1.03736 0.98877 0.96947 1.21379 0.99103 1.34848 0.99281 0.92767 1.25639 0.96257 0.96909 0.99836 1.70018 1.06883 1.45679 1.33564 0.85541 0.77925 0.78072 0.80280 1.19386 1.20812 1.20821 1.19639 0.92036 0.96038 0.95311 1.20692 1.00519 0.92189 1.02549 1.20385 0.94305 0.95505 1.08415 0.91993 0.88140 0.91787 0.91115 0.91430 0.83448 0.84954 0.91563 0.94788 0.92287 0.92793 0.96283 0.95779 0.94925 0.92096 0.93083 0.91556 0.90514 0.92227 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.04 0.70 5.46 71.98 0.39 1.10 16 3 O -0.33 -8.00 10.14 -92.43 -0.94 -8.93 16 4 C 0.12 3.22 6.69 22.51 0.15 3.37 16 5 C -0.21 -5.23 9.04 22.37 0.20 -5.03 16 6 C -0.08 -2.06 9.46 22.25 0.21 -1.85 16 7 C -0.12 -3.81 4.68 -19.85 -0.09 -3.90 16 8 C 0.10 3.67 3.85 85.56 0.33 4.00 16 9 N -0.53 -22.51 4.51 -906.04 -4.09 -26.59 16 10 C 0.05 1.80 8.32 127.69 1.06 2.86 16 11 C 0.22 10.89 2.30 44.17 0.10 10.99 16 12 H 0.01 0.45 7.86 -2.38 -0.02 0.43 16 13 C -0.16 -7.65 8.25 71.98 0.59 -7.05 16 14 C -0.51 -27.79 7.82 25.60 0.20 -27.59 16 15 H 0.05 3.00 7.18 -2.91 -0.02 2.98 16 16 C 0.01 0.65 5.30 84.65 0.45 1.10 16 17 N -0.92 -52.81 11.32 21.45 0.24 -52.56 16 18 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C -0.03 -0.93 5.88 -19.88 -0.12 -1.05 16 23 C -0.10 -3.21 9.39 71.23 0.67 -2.54 16 24 C -0.17 -4.81 9.62 22.37 0.22 -4.59 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 29 H 0.07 0.98 7.66 -2.38 -0.02 0.96 16 30 H 0.15 2.72 6.30 -2.91 -0.02 2.70 16 31 H 0.13 3.20 8.00 -2.91 -0.02 3.18 16 32 H 0.07 2.49 6.40 -2.38 -0.02 2.48 16 33 H 0.03 1.20 6.98 -2.38 -0.02 1.18 16 34 H 0.06 2.09 7.50 -2.39 -0.02 2.07 16 35 H 0.05 2.30 6.64 -2.39 -0.02 2.29 16 36 H 0.02 0.70 6.72 -2.38 -0.02 0.69 16 37 H 0.02 1.03 7.06 -2.39 -0.02 1.01 16 38 H 0.03 1.51 6.57 -2.39 -0.02 1.50 16 39 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 40 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.08 1.96 8.05 -2.39 -0.02 1.94 16 43 H 0.06 1.97 6.46 -2.39 -0.02 1.96 16 44 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -61.21 345.20 3.32 -57.89 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.97 Total: 15.42 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 5.11 Total: -31.17 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.84 Total: -79.16 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.94 Total: -8.93 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -61.21 3.32 -57.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.354 kcal (2) G-P(sol) polarization free energy of solvation -61.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds