Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47263 * 2 1 4 4 N 1.30844 * 125.89559 * 277.31166 * 3 2 1 5 5 N 1.40084 * 108.20227 * 180.25661 * 4 3 2 6 6 C 1.46498 * 126.04175 * 179.74103 * 5 4 3 7 7 C 1.34955 * 107.92909 * 359.72157 * 5 4 3 8 8 C 1.35324 * 107.73857 * 0.02562 * 7 5 4 9 9 C 1.50704 * 126.03227 * 180.02562 * 8 7 5 10 10 N 1.46898 * 109.46805 * 264.90653 * 9 8 7 11 11 C 1.46845 * 111.00368 * 287.87231 * 10 9 8 12 12 C 1.53042 * 109.52361 * 185.83903 * 11 10 9 13 13 C 1.53117 * 109.27938 * 300.82253 * 12 11 10 14 14 C 1.53128 * 109.16100 * 57.65304 * 13 12 11 15 15 H 1.08995 * 109.50160 * 62.32576 * 14 13 12 16 16 C 1.50700 * 109.50224 * 182.40630 * 14 13 12 17 17 H 1.07997 * 119.99773 * 114.21887 * 16 14 13 18 18 C 1.37880 * 119.99986 * 294.21865 * 16 14 13 19 19 N 1.31509 * 120.00223 * 157.80223 * 18 16 14 20 20 Si 1.86799 * 119.99873 * 337.79975 * 18 16 14 21 21 H 1.48497 * 109.47193 * 270.00253 * 20 18 16 22 22 H 1.48501 * 109.47096 * 149.99968 * 20 18 16 23 23 H 1.48503 * 109.47409 * 30.00191 * 20 18 16 24 24 C 1.46848 * 110.99884 * 52.08559 * 10 9 8 25 25 H 1.08996 * 109.47306 * 59.99774 * 1 2 3 26 26 H 1.08995 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47112 * 300.00064 * 1 2 3 28 28 H 1.09004 * 109.47112 * 239.99936 * 2 1 3 29 29 H 1.08996 * 109.47306 * 120.00226 * 2 1 3 30 30 H 1.08998 * 109.47160 * 269.98126 * 6 5 4 31 31 H 1.09001 * 109.46857 * 29.97826 * 6 5 4 32 32 H 1.09000 * 109.47740 * 149.97388 * 6 5 4 33 33 H 1.07994 * 126.13501 * 179.97438 * 7 5 4 34 34 H 1.09005 * 109.46601 * 144.91780 * 9 8 7 35 35 H 1.08994 * 109.47326 * 24.91484 * 9 8 7 36 36 H 1.08999 * 109.45873 * 65.82690 * 11 10 9 37 37 H 1.08997 * 109.46478 * 305.85399 * 11 10 9 38 38 H 1.08999 * 109.50038 * 180.88454 * 12 11 10 39 39 H 1.08996 * 109.50183 * 60.76549 * 12 11 10 40 40 H 1.09007 * 109.52273 * 297.75035 * 13 12 11 41 41 H 1.08992 * 109.57543 * 177.59071 * 13 12 11 42 42 H 0.96997 * 119.99795 * 354.93239 * 19 18 16 43 43 H 1.09003 * 109.46369 * 54.14325 * 24 10 9 44 44 H 1.08995 * 109.46263 * 294.17185 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1609 2.1890 -1.0513 5 7 2.6624 3.4272 -0.6298 6 6 2.9591 4.5752 -1.4903 7 6 2.8237 3.3761 0.7091 8 6 2.4383 2.1471 1.1242 9 6 2.4493 1.6478 2.5460 10 7 3.6973 0.9149 2.7980 11 6 3.6948 -0.3814 2.1082 12 6 4.9400 -1.1761 2.5084 13 6 6.1915 -0.3785 2.1312 14 6 6.1457 0.9861 2.8244 15 1 6.1555 0.8457 3.9052 16 6 7.3447 1.8005 2.4118 17 1 7.2119 2.7001 1.8292 18 6 8.6113 1.3970 2.7781 19 7 9.6564 1.8108 2.0954 20 14 8.8427 0.2628 4.2442 21 1 9.0144 1.0745 5.4758 22 1 10.0481 -0.5785 4.0337 23 1 7.6495 -0.6093 4.3886 24 6 4.8656 1.7180 2.4150 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9922 4.5153 -1.8325 31 1 2.2902 4.5665 -2.3509 32 1 2.8154 5.4977 -0.9278 33 1 3.1946 4.1728 1.3367 34 1 1.5997 0.9835 2.7043 35 1 2.3808 2.4944 3.2290 36 1 3.6983 -0.2193 1.0303 37 1 2.8019 -0.9402 2.3884 38 1 4.9459 -2.1317 1.9842 39 1 4.9302 -1.3505 3.5842 40 1 6.2216 -0.2374 1.0507 41 1 7.0807 -0.9207 2.4526 42 1 9.5323 2.3391 1.2915 43 1 4.8229 2.6841 2.9180 44 1 4.8636 1.8703 1.3357 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597176970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = 68.932727 kcal Electronic energy + Delta-G solvation = -22819.071772 eV Core-core repulsion = 19772.568423 eV Total energy + Delta-G solvation = -3046.503349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29897 -38.25865 -34.90894 -33.75099 -32.40271 -31.54548 -30.11061 -29.71672 -27.12077 -25.41827 -24.64177 -23.22448 -22.04009 -21.14428 -20.29584 -19.37885 -18.34949 -17.44279 -16.57447 -15.56084 -15.09390 -14.71481 -14.33550 -14.25759 -13.94121 -13.78969 -13.32649 -13.28652 -12.97172 -12.76567 -12.55112 -12.28748 -12.11767 -12.03466 -11.73763 -11.69409 -11.32209 -11.00567 -10.96154 -10.53900 -10.36878 -10.25514 -10.00326 -9.73720 -9.52578 -9.29668 -9.07854 -8.73105 -8.25501 -8.07282 -7.68112 -6.39229 -3.97857 2.01222 2.60425 2.86945 3.48829 3.51475 3.68312 4.48184 4.58596 4.64985 4.84198 4.95341 5.10145 5.12574 5.29654 5.32747 5.34008 5.37947 5.43923 5.60222 5.62326 5.70110 5.83332 5.86297 5.93112 6.05162 6.14138 6.18036 6.23034 6.26269 6.33461 6.42994 6.51314 6.65201 6.78385 6.81059 6.97157 7.03544 7.12717 7.41385 7.59429 7.74766 7.78258 7.85998 8.32605 8.43993 8.97182 9.67682 10.97755 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.005790 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.025940 B = 4834.757934 C = 5680.246688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C 0.088 3.912 4 N -0.302 5.302 5 N -0.379 5.379 6 C 0.104 3.896 7 C 0.068 3.932 8 C -0.261 4.261 9 C 0.130 3.870 10 N -0.531 5.531 11 C 0.057 3.943 12 C -0.122 4.122 13 C -0.112 4.112 14 C 0.027 3.973 15 H 0.029 0.971 16 C -0.601 4.601 17 H 0.051 0.949 18 C 0.036 3.964 19 N -0.906 5.906 20 Si 1.040 2.960 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.271 1.271 24 C 0.081 3.919 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.267 0.733 43 H 0.057 0.943 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.671 0.069 -2.941 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.079 4.079 4 N -0.124 5.124 5 N -0.160 5.160 6 C -0.037 4.037 7 C -0.078 4.078 8 C -0.274 4.274 9 C 0.000 4.000 10 N -0.254 5.254 11 C -0.071 4.071 12 C -0.159 4.159 13 C -0.150 4.150 14 C 0.008 3.992 15 H 0.047 0.953 16 C -0.639 4.639 17 H 0.069 0.931 18 C -0.169 4.169 19 N -0.539 5.539 20 Si 0.868 3.132 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.196 1.196 24 C -0.046 4.046 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.187 0.813 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -16.571 -0.512 -2.867 16.825 hybrid contribution -0.866 1.215 -1.190 1.908 sum -17.436 0.703 -4.057 17.916 Atomic orbital electron populations 1.21686 0.94555 1.01648 1.02078 1.20309 0.95978 0.89321 1.04081 1.22111 0.98720 0.96556 0.90501 1.77215 1.21278 0.91078 1.22863 1.48320 1.50660 1.11421 1.05603 1.21801 1.02375 0.84711 0.94840 1.22367 1.00929 0.99537 0.84996 1.20812 1.13304 0.94669 0.98574 1.20544 0.93034 0.97616 0.88773 1.62446 1.02252 1.03846 1.56854 1.22231 0.97752 0.90734 0.96342 1.21699 0.95671 0.97408 1.01165 1.21933 0.95075 0.97992 1.00030 1.19040 0.92419 0.91951 0.95840 0.95282 1.21899 0.91719 1.11487 1.38784 0.93114 1.25709 0.92137 0.98246 1.00790 1.70824 1.32496 1.34503 1.16112 0.84086 0.75779 0.76958 0.76386 1.21365 1.21592 1.19615 1.22040 0.89354 0.95700 0.97468 0.92767 0.92162 0.92527 0.90731 0.88787 0.90806 0.89638 0.89658 0.81277 0.90911 0.90665 0.94657 0.92006 0.93107 0.91940 0.93699 0.93144 0.92368 0.92468 0.95695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.89 37.16 0.37 -1.10 16 2 C -0.06 -0.73 5.48 -27.89 -0.15 -0.89 16 3 C 0.09 1.36 5.75 -82.41 -0.47 0.88 16 4 N -0.30 -4.98 12.58 33.67 0.42 -4.56 16 5 N -0.38 -5.54 4.01 -68.16 -0.27 -5.81 16 6 C 0.10 1.05 11.47 59.85 0.69 1.74 16 7 C 0.07 1.00 10.42 -17.22 -0.18 0.82 16 8 C -0.26 -3.98 3.88 -105.05 -0.41 -4.39 16 9 C 0.13 1.89 5.59 -4.98 -0.03 1.86 16 10 N -0.53 -9.37 4.86 -236.11 -1.15 -10.52 16 11 C 0.06 0.95 3.70 -3.83 -0.01 0.94 16 12 C -0.12 -2.22 6.09 -26.65 -0.16 -2.38 16 13 C -0.11 -2.53 4.81 -26.60 -0.13 -2.65 16 14 C 0.03 0.65 1.81 -91.69 -0.17 0.49 16 15 H 0.03 0.73 6.51 -51.93 -0.34 0.39 16 16 C -0.60 -17.02 8.78 -34.44 -0.30 -17.32 16 17 H 0.05 1.55 7.99 -52.49 -0.42 1.13 16 18 C 0.04 1.05 5.29 -17.82 -0.09 0.96 16 19 N -0.91 -28.09 13.70 55.43 0.76 -27.33 16 20 Si 1.04 25.62 26.45 -169.99 -4.50 21.12 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.21 5.85 56.52 0.33 -5.88 16 24 C 0.08 1.71 3.85 -3.83 -0.01 1.69 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.16 4.12 -51.93 -0.21 0.94 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.17 2.11 8.06 -52.49 -0.42 1.68 16 34 H 0.07 0.94 7.81 -51.93 -0.41 0.53 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.04 0.62 5.61 -51.93 -0.29 0.33 16 37 H 0.06 0.87 6.93 -51.93 -0.36 0.51 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.04 1.06 8.14 -51.92 -0.42 0.63 16 41 H 0.05 1.18 5.70 -51.93 -0.30 0.88 16 42 H 0.27 8.25 8.73 -40.82 -0.36 7.90 16 43 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 44 H 0.02 0.57 6.69 -51.93 -0.35 0.22 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -32.90 334.30 -8.15 -41.05 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.39 Total: 0.35 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.07 Total: -19.34 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.24 Total: -48.22 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -4.50 Total: 21.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.90 -8.15 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597176970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.985 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds