Wall clock time and date at job start Mon Mar 30 2020 01:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47334 * 2 1 4 4 C 1.46508 * 119.99962 * 270.00029 * 3 2 1 5 5 C 1.52995 * 109.46770 * 269.99863 * 4 3 2 6 6 C 1.52998 * 109.47288 * 299.99331 * 5 4 3 7 7 C 1.52999 * 109.47247 * 60.00036 * 5 4 3 8 8 C 1.53009 * 109.46560 * 180.02562 * 5 4 3 9 9 C 1.50705 * 109.46734 * 180.02562 * 8 5 4 10 10 H 1.07997 * 120.00146 * 359.97438 * 9 8 5 11 11 C 1.37873 * 120.00002 * 179.97438 * 9 8 5 12 12 N 1.31523 * 119.99682 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00117 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46734 * 90.00388 * 13 11 9 15 15 H 1.48500 * 109.47135 * 209.99821 * 13 11 9 16 16 H 1.48496 * 109.47212 * 330.00626 * 13 11 9 17 17 C 1.39671 * 120.00210 * 89.99317 * 3 2 1 18 18 C 1.38978 * 120.04799 * 179.97438 * 17 3 2 19 19 C 1.38107 * 120.03702 * 180.02562 * 18 17 3 20 20 C 1.38213 * 120.12574 * 359.74472 * 19 18 17 21 21 C 1.38767 * 120.09519 * 0.51415 * 20 19 18 22 22 O 1.35905 * 120.02062 * 179.76940 * 21 20 19 23 23 C 1.38619 * 119.96399 * 359.48442 * 21 20 19 24 24 H 1.08999 * 109.46706 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46949 * 300.00186 * 1 2 3 26 26 H 1.09000 * 109.46482 * 60.00033 * 1 2 3 27 27 H 1.09002 * 109.47383 * 239.99656 * 2 1 3 28 28 H 1.09006 * 109.47068 * 119.99602 * 2 1 3 29 29 H 1.08997 * 109.46723 * 30.00250 * 4 3 2 30 30 H 1.09006 * 109.46871 * 149.99513 * 4 3 2 31 31 H 1.09004 * 109.46895 * 60.00212 * 6 5 4 32 32 H 1.08998 * 109.47542 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.47464 * 300.00686 * 6 5 4 34 34 H 1.08996 * 109.47073 * 59.99947 * 7 5 4 35 35 H 1.09001 * 109.46674 * 179.97438 * 7 5 4 36 36 H 1.08994 * 109.47040 * 299.99216 * 7 5 4 37 37 H 1.09001 * 109.46686 * 299.99516 * 8 5 4 38 38 H 1.08993 * 109.47295 * 59.99864 * 8 5 4 39 39 H 0.97001 * 119.99780 * 179.97438 * 12 11 9 40 40 H 1.08005 * 119.98093 * 0.02562 * 18 17 3 41 41 H 1.07997 * 119.93807 * 180.02562 * 19 18 17 42 42 H 1.08005 * 119.95276 * 180.27371 * 20 19 18 43 43 H 0.96705 * 113.99576 * 269.71966 * 22 21 20 44 44 H 1.07994 * 120.06347 * 180.23140 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7104 6 6 4.6632 2.3706 -0.6442 7 6 3.9419 0.3305 -1.8933 8 6 3.9627 2.5531 -3.0352 9 6 5.3859 2.3158 -3.4705 10 1 6.0427 1.7110 -2.8629 11 6 5.8494 2.8707 -4.6444 12 7 5.0493 3.6067 -5.3846 13 14 7.6135 2.5770 -5.1837 14 1 7.6767 1.3561 -6.0266 15 1 8.0926 3.7443 -5.9667 16 1 8.4736 2.3972 -3.9866 17 6 2.2511 2.0397 1.2096 18 6 2.7149 3.3498 1.2107 19 6 2.9454 4.0005 2.4068 20 6 2.7107 3.3531 3.6052 21 6 2.2527 2.0432 3.6104 22 8 2.0269 1.4065 4.7896 23 6 2.0200 1.3864 2.4120 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1411 -1.1384 31 1 4.4815 1.8568 0.2999 32 1 5.6926 2.1997 -0.9589 33 1 4.4962 3.4398 -0.5138 34 1 3.2612 -0.0536 -2.6529 35 1 4.9713 0.1593 -2.2083 36 1 3.7603 -0.1833 -0.9493 37 1 3.2819 2.1693 -3.7950 38 1 3.7959 3.6223 -2.9044 39 1 5.3754 3.9974 -6.2104 40 1 2.8952 3.8593 0.2756 41 1 3.3055 5.0187 2.4058 42 1 2.8877 3.8662 4.5390 43 1 2.7943 0.9271 5.1310 44 1 1.6600 0.3682 2.4142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597252574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:48 Heat of formation + Delta-G solvation = -39.977542 kcal Electronic energy + Delta-G solvation = -22445.001622 eV Core-core repulsion = 19361.482819 eV Total energy + Delta-G solvation = -3083.518803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13629 -39.38866 -37.45048 -36.22234 -34.36856 -32.16368 -31.15027 -29.74261 -28.86443 -27.91219 -27.05281 -24.94233 -24.16394 -22.95395 -21.57012 -19.78892 -18.94350 -18.30094 -17.70019 -17.10794 -16.57898 -16.29047 -15.96875 -15.66175 -15.26047 -15.12231 -14.79782 -14.37262 -14.08890 -13.93674 -13.81429 -13.58509 -13.11252 -13.05371 -12.73022 -12.72842 -12.66329 -12.47753 -12.31102 -12.26856 -12.09408 -11.99756 -11.77725 -11.39507 -11.21853 -11.10075 -10.85006 -10.49826 -10.45345 -9.54004 -8.17653 -8.05828 -6.20033 0.48400 0.72860 1.40086 1.40940 1.50923 2.22696 2.44394 2.91144 3.20571 3.45859 3.96615 4.00353 4.14866 4.22571 4.30889 4.40644 4.43612 4.46678 4.55635 4.61071 4.68107 4.81799 4.84477 4.90053 4.94336 5.00476 5.02532 5.09736 5.16485 5.17867 5.34636 5.42774 5.49716 5.51289 5.54905 5.60384 5.63235 5.72446 5.84373 5.90145 5.92560 6.33233 6.47495 6.65653 6.94451 6.97009 7.47167 8.98175 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.004566 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.080190 B = 6130.596690 C = 6724.815294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.615 5.615 4 C 0.141 3.859 5 C -0.070 4.070 6 C -0.110 4.110 7 C -0.118 4.118 8 C 0.043 3.957 9 C -0.513 4.513 10 H 0.061 0.939 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.951 3.049 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.266 1.266 17 C 0.235 3.765 18 C -0.218 4.218 19 C -0.062 4.062 20 C -0.218 4.218 21 C 0.143 3.857 22 O -0.511 6.511 23 C -0.238 4.238 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.061 0.939 37 H -0.010 1.010 38 H -0.012 1.012 39 H 0.259 0.741 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.409 0.591 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 -6.239 16.628 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.323 5.323 4 C 0.017 3.983 5 C -0.072 4.072 6 C -0.168 4.168 7 C -0.175 4.175 8 C 0.005 3.995 9 C -0.551 4.551 10 H 0.079 0.921 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.777 3.223 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.190 1.190 17 C 0.131 3.869 18 C -0.240 4.240 19 C -0.080 4.080 20 C -0.238 4.238 21 C 0.098 3.902 22 O -0.324 6.324 23 C -0.261 4.261 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.008 0.992 38 H 0.006 0.994 39 H 0.068 0.932 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.268 0.732 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.896 -6.035 16.247 18.653 hybrid contribution 1.353 0.079 -0.909 1.632 sum -5.542 -5.957 15.338 17.362 Atomic orbital electron populations 1.22158 0.95800 1.02689 1.01585 1.21676 0.94400 0.81876 1.03371 1.46685 1.69895 1.13512 1.02203 1.21408 0.95441 0.96823 0.84588 1.20909 0.94479 0.96237 0.95540 1.21736 0.98526 0.99463 0.97031 1.21712 1.00902 0.94831 1.00037 1.18956 0.95273 0.93698 0.91544 1.21573 0.97917 1.29931 1.05653 0.92086 1.25832 1.01332 0.95370 0.97155 1.70093 1.37379 1.35363 1.14806 0.85655 0.80678 0.77552 0.78440 1.20131 1.21252 1.19032 1.17723 0.92072 0.91222 0.85864 1.21010 1.09044 0.94780 0.99207 1.20945 0.96132 0.99812 0.91151 1.21259 1.07859 0.95811 0.98897 1.18222 0.95987 0.91292 0.84696 1.84721 1.42111 1.69970 1.35551 1.20908 1.12819 1.01826 0.90511 0.90051 0.93208 0.93330 0.90050 0.89928 0.91124 0.91753 0.92908 0.94568 0.93941 0.93884 0.94117 0.92046 0.99201 0.99355 0.93172 0.86388 0.84492 0.84809 0.73242 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.24 71.98 0.74 -2.49 16 2 C 0.11 2.41 4.78 86.38 0.41 2.83 16 3 N -0.61 -16.79 2.10 -697.33 -1.46 -18.26 16 4 C 0.14 4.57 4.53 86.38 0.39 4.96 16 5 C -0.07 -2.67 0.60 -52.18 -0.03 -2.71 16 6 C -0.11 -4.11 6.64 71.98 0.48 -3.63 16 7 C -0.12 -4.15 6.97 71.98 0.50 -3.65 16 8 C 0.04 2.13 4.04 29.85 0.12 2.26 16 9 C -0.51 -27.78 7.65 25.60 0.20 -27.58 16 10 H 0.06 3.22 5.68 -2.91 -0.02 3.20 16 11 C 0.00 0.01 5.46 84.65 0.46 0.47 16 12 N -0.94 -56.10 13.29 21.45 0.28 -55.81 16 13 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 17 C 0.23 6.52 5.20 38.20 0.20 6.72 16 18 C -0.22 -6.26 7.16 22.42 0.16 -6.10 16 19 C -0.06 -1.55 10.03 22.23 0.22 -1.33 16 20 C -0.22 -5.14 9.98 22.39 0.22 -4.92 16 21 C 0.14 3.43 6.70 22.49 0.15 3.58 16 22 O -0.51 -10.24 13.50 -92.48 -1.25 -11.49 16 23 C -0.24 -5.96 9.14 22.49 0.21 -5.75 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.82 6.05 -2.39 -0.01 1.81 16 28 H 0.08 1.62 6.20 -2.38 -0.01 1.60 16 29 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 30 H 0.06 2.17 6.20 -2.38 -0.01 2.16 16 31 H 0.05 1.78 6.00 -2.39 -0.01 1.77 16 32 H 0.04 1.47 6.62 -2.39 -0.02 1.46 16 33 H 0.04 1.58 6.35 -2.39 -0.02 1.57 16 34 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 35 H 0.04 1.59 6.62 -2.39 -0.02 1.57 16 36 H 0.06 1.83 5.99 -2.39 -0.01 1.82 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 40 H 0.12 3.69 4.52 -2.91 -0.01 3.68 16 41 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.41 4.17 9.06 -74.05 -0.67 3.50 16 44 H 0.13 2.99 6.14 -2.91 -0.02 2.97 16 Total: -1.00 -64.14 335.58 4.36 -59.79 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.33 Total: 17.10 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 4.43 Total: -37.35 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -1.18 Total: -74.07 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.25 Total: -11.49 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -64.14 4.36 -59.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597252574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.809 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds