Wall clock time and date at job start Mon Mar 30 2020 01:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46945 * 2 1 4 4 C 1.50702 * 109.46908 * 239.99766 * 2 1 3 5 5 H 1.08001 * 119.99930 * 239.99338 * 4 2 1 6 6 C 1.37876 * 119.99816 * 60.00302 * 4 2 1 7 7 N 1.31512 * 120.00305 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99820 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47622 * 59.99420 * 8 6 4 10 10 H 1.48500 * 109.47139 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46896 * 299.99617 * 8 6 4 12 12 C 1.50699 * 109.47351 * 119.99894 * 2 1 3 13 13 O 1.21275 * 120.00070 * 120.00231 * 12 2 1 14 14 N 1.34785 * 119.99735 * 300.00144 * 12 2 1 15 15 C 1.48084 * 127.84955 * 0.02562 * 14 12 2 16 16 C 1.54266 * 104.77233 * 219.89304 * 15 14 12 17 17 H 1.08995 * 112.75172 * 99.81992 * 16 15 14 18 18 C 1.55837 * 108.02725 * 225.10530 * 16 15 14 19 19 H 1.09005 * 115.86266 * 311.06624 * 18 16 15 20 20 C 1.55910 * 104.55954 * 181.44768 * 18 16 15 21 21 C 1.54586 * 104.63181 * 289.55246 * 20 18 16 22 22 C 1.55920 * 104.63757 * 359.97438 * 21 20 18 23 23 H 1.08999 * 116.46273 * 199.73566 * 22 21 20 24 24 C 1.56903 * 100.69535 * 326.27095 * 22 21 20 25 25 C 1.55551 * 104.71230 * 336.01819 * 16 15 14 26 26 C 1.52997 * 112.89221 * 123.64028 * 25 16 15 27 27 C 1.48089 * 127.84601 * 180.02562 * 14 12 2 28 28 H 1.08997 * 109.46880 * 299.99468 * 1 2 3 29 29 H 1.08994 * 109.47147 * 60.00541 * 1 2 3 30 30 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99957 * 180.02562 * 7 6 4 32 32 H 1.09005 * 110.37444 * 101.07022 * 15 14 12 33 33 H 1.08995 * 110.37752 * 338.72042 * 15 14 12 34 34 H 1.08999 * 110.40871 * 48.33505 * 20 18 16 35 35 H 1.09001 * 110.40858 * 170.64957 * 20 18 16 36 36 H 1.09004 * 110.40017 * 241.19825 * 21 20 18 37 37 H 1.08993 * 110.40236 * 118.77416 * 21 20 18 38 38 H 1.09003 * 112.02672 * 170.24590 * 24 22 21 39 39 H 1.09002 * 112.02836 * 296.75964 * 24 22 21 40 40 H 1.08996 * 109.47681 * 171.12624 * 26 25 16 41 41 H 1.09004 * 109.46588 * 291.12763 * 26 25 16 42 42 H 1.09005 * 109.46795 * 51.11963 * 26 25 16 43 43 H 1.09006 * 110.37855 * 258.90857 * 27 14 12 44 44 H 1.08997 * 110.38152 * 21.14584 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8268 -0.4200 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6964 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 0.8736 0.9274 2.7905 16 6 1.5834 1.5810 3.9942 17 1 2.1937 2.4380 3.7092 18 6 0.5008 1.9385 5.0566 19 1 -0.3725 2.4741 4.6839 20 6 1.2951 2.6223 6.2108 21 6 2.1076 1.4772 6.8575 22 6 1.7269 0.2096 6.0332 23 1 1.9166 -0.7533 6.5074 24 6 0.2300 0.5269 5.6859 25 6 2.4003 0.4282 4.6448 26 6 3.8931 0.7447 4.7543 27 6 2.1009 -0.8062 3.7692 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7082 1.1608 -3.4845 32 1 -0.1327 0.6135 3.0679 33 1 0.8378 1.6195 1.9493 34 1 1.9642 3.3848 5.8121 35 1 0.6096 3.0609 6.9361 36 1 1.8217 1.3511 7.9018 37 1 3.1760 1.6766 6.7764 38 1 -0.1781 -0.1739 4.9575 39 1 -0.3923 0.5898 6.5786 40 1 4.3842 -0.0218 5.3537 41 1 4.3342 0.7647 3.7577 42 1 4.0245 1.7171 5.2292 43 1 1.2827 -1.3857 4.1968 44 1 2.9914 -1.4265 3.6673 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:36 Heat of formation + Delta-G solvation = -32.996290 kcal Electronic energy + Delta-G solvation = -23036.685189 eV Core-core repulsion = 19953.469115 eV Total energy + Delta-G solvation = -3083.216074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43626 -38.38811 -35.33353 -33.74920 -32.12595 -30.59441 -29.95681 -28.77988 -26.56688 -25.86953 -25.08645 -23.59542 -21.65680 -20.69808 -19.85650 -18.55781 -17.99601 -16.42200 -16.10797 -15.67260 -15.44905 -15.01207 -14.42164 -14.23153 -13.96461 -13.26212 -13.08426 -12.76314 -12.62791 -12.36796 -12.14019 -11.76883 -11.63873 -11.45549 -11.39392 -11.26577 -10.96411 -10.94756 -10.90779 -10.69236 -10.62028 -10.56452 -10.29800 -10.24822 -10.20345 -9.94919 -9.80162 -8.93703 -8.55784 -8.27187 -8.01603 -5.99717 -4.02604 3.38567 3.40538 3.45977 3.71213 3.75653 4.34776 4.35652 4.45952 4.51275 4.78698 4.94660 5.08976 5.16936 5.24488 5.32956 5.33918 5.35844 5.40739 5.52166 5.60096 5.72090 5.75107 5.83727 5.85950 5.91351 5.95096 6.03331 6.05990 6.10277 6.15201 6.20472 6.22144 6.32629 6.39727 6.49053 6.67810 6.84554 6.93376 7.03768 7.53393 7.79975 8.05268 8.22463 8.49626 9.05714 9.29127 9.62566 11.07890 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035082 B = 0.004567 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.943645 B = 6128.997995 C = 6440.924450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 H 0.050 0.950 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.540 3.460 13 O -0.547 6.547 14 N -0.632 5.632 15 C 0.108 3.892 16 C -0.096 4.096 17 H 0.088 0.912 18 C -0.097 4.097 19 H 0.100 0.900 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.092 4.092 23 H 0.096 0.904 24 C -0.129 4.129 25 C -0.070 4.070 26 C -0.130 4.130 27 C 0.110 3.890 28 H 0.018 0.982 29 H 0.092 0.908 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 4.789 19.152 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.015 3.985 3 H 0.068 0.932 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.333 3.667 13 O -0.423 6.423 14 N -0.368 5.368 15 C -0.015 4.015 16 C -0.115 4.115 17 H 0.106 0.894 18 C -0.115 4.115 19 H 0.118 0.882 20 C -0.156 4.156 21 C -0.161 4.161 22 C -0.110 4.110 23 H 0.115 0.885 24 C -0.166 4.166 25 C -0.071 4.071 26 C -0.187 4.187 27 C -0.013 4.013 28 H 0.037 0.963 29 H 0.110 0.890 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.151 4.305 18.782 19.303 hybrid contribution 0.226 -0.367 -0.792 0.902 sum -0.925 3.938 17.990 18.439 Atomic orbital electron populations 1.21843 0.96581 0.99801 1.01167 1.18800 0.94166 0.96615 0.88910 0.93220 1.21121 1.30951 1.12793 0.89043 0.90922 1.24936 0.95131 0.95076 0.99041 1.69864 1.37118 1.23122 1.23561 0.86512 0.79283 0.79728 0.81645 1.20214 1.21373 1.20205 1.21778 0.78117 0.83950 0.82889 1.90529 1.38657 1.27273 1.85860 1.49261 1.52674 1.29965 1.04871 1.22431 0.93849 0.88167 0.97076 1.23286 0.96154 0.97439 0.94599 0.89394 1.23577 0.96929 0.96102 0.94895 0.88223 1.22550 0.98393 0.97409 0.97234 1.22670 1.00341 0.94702 0.98399 1.23567 0.95129 0.97598 0.94747 0.88548 1.23661 0.96029 0.96758 1.00132 1.22451 0.95191 0.95086 0.94336 1.21673 0.93916 1.01077 1.02006 1.22246 1.00189 0.95106 0.83781 0.96303 0.88952 0.95237 0.92958 0.91587 0.89796 0.91857 0.92166 0.92312 0.91159 0.90832 0.91368 0.92600 0.92275 0.92202 0.92004 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.72 37.16 0.32 -2.89 16 2 C 0.04 0.93 1.97 -92.92 -0.18 0.74 16 3 H 0.05 1.33 7.95 -51.93 -0.41 0.92 16 4 C -0.50 -14.58 8.37 -34.44 -0.29 -14.87 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.54 13.04 7.26 -10.98 -0.08 12.96 16 13 O -0.55 -15.05 15.72 5.56 0.09 -14.96 16 14 N -0.63 -11.88 3.30 -169.55 -0.56 -12.44 16 15 C 0.11 1.64 4.43 -2.51 -0.01 1.63 16 16 C -0.10 -1.16 3.07 -87.09 -0.27 -1.43 16 17 H 0.09 1.09 7.89 -51.93 -0.41 0.68 16 18 C -0.10 -0.94 4.34 -85.43 -0.37 -1.31 16 19 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 20 C -0.12 -1.02 6.21 -24.34 -0.15 -1.17 16 21 C -0.12 -1.07 6.00 -24.34 -0.15 -1.21 16 22 C -0.09 -0.90 4.09 -85.43 -0.35 -1.25 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 24 C -0.13 -1.25 6.03 -22.50 -0.14 -1.39 16 25 C -0.07 -0.84 0.78 -150.96 -0.12 -0.96 16 26 C -0.13 -1.51 8.07 37.16 0.30 -1.21 16 27 C 0.11 1.71 5.88 -2.50 -0.01 1.70 16 28 H 0.02 0.37 5.34 -51.93 -0.28 0.09 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.07 0.93 6.58 -51.93 -0.34 0.59 16 33 H 0.08 1.37 6.54 -51.93 -0.34 1.03 16 34 H 0.06 0.55 7.97 -51.93 -0.41 0.14 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.61 5.73 -51.93 -0.30 0.31 16 38 H 0.07 0.81 5.80 -51.93 -0.30 0.50 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.61 6.49 -51.93 -0.34 0.27 16 43 H 0.06 0.89 6.69 -51.93 -0.35 0.55 16 44 H 0.07 1.27 7.67 -51.93 -0.40 0.87 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -31.33 322.64 -8.65 -39.98 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.06 Total: -0.64 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.59 Total: -9.10 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.07 Total: -37.30 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.96 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.33 -8.65 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.982 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds