Wall clock time and date at job start Mon Mar 30 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46945 * 2 1 4 4 C 1.50702 * 109.46908 * 239.99766 * 2 1 3 5 5 H 1.08001 * 119.99930 * 239.99338 * 4 2 1 6 6 C 1.37876 * 119.99816 * 60.00302 * 4 2 1 7 7 N 1.31512 * 120.00305 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99820 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47622 * 59.99420 * 8 6 4 10 10 H 1.48500 * 109.47139 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46896 * 299.99617 * 8 6 4 12 12 C 1.50699 * 109.47351 * 119.99894 * 2 1 3 13 13 O 1.21275 * 120.00070 * 120.00231 * 12 2 1 14 14 N 1.34785 * 119.99735 * 300.00144 * 12 2 1 15 15 C 1.48084 * 127.84955 * 0.02562 * 14 12 2 16 16 C 1.54266 * 104.77233 * 219.89304 * 15 14 12 17 17 H 1.08995 * 112.75172 * 99.81992 * 16 15 14 18 18 C 1.55837 * 108.02725 * 225.10530 * 16 15 14 19 19 H 1.09005 * 115.86266 * 311.06624 * 18 16 15 20 20 C 1.55910 * 104.55954 * 181.44768 * 18 16 15 21 21 C 1.54586 * 104.63181 * 289.55246 * 20 18 16 22 22 C 1.55920 * 104.63757 * 359.97438 * 21 20 18 23 23 H 1.08999 * 116.46273 * 199.73566 * 22 21 20 24 24 C 1.56903 * 100.69535 * 326.27095 * 22 21 20 25 25 C 1.55551 * 104.71230 * 336.01819 * 16 15 14 26 26 C 1.52997 * 112.89221 * 123.64028 * 25 16 15 27 27 C 1.48089 * 127.84601 * 180.02562 * 14 12 2 28 28 H 1.08997 * 109.46880 * 299.99468 * 1 2 3 29 29 H 1.08994 * 109.47147 * 60.00541 * 1 2 3 30 30 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99957 * 180.02562 * 7 6 4 32 32 H 1.09005 * 110.37444 * 101.07022 * 15 14 12 33 33 H 1.08995 * 110.37752 * 338.72042 * 15 14 12 34 34 H 1.08999 * 110.40871 * 48.33505 * 20 18 16 35 35 H 1.09001 * 110.40858 * 170.64957 * 20 18 16 36 36 H 1.09004 * 110.40017 * 241.19825 * 21 20 18 37 37 H 1.08993 * 110.40236 * 118.77416 * 21 20 18 38 38 H 1.09003 * 112.02672 * 170.24590 * 24 22 21 39 39 H 1.09002 * 112.02836 * 296.75964 * 24 22 21 40 40 H 1.08996 * 109.47681 * 171.12624 * 26 25 16 41 41 H 1.09004 * 109.46588 * 291.12763 * 26 25 16 42 42 H 1.09005 * 109.46795 * 51.11963 * 26 25 16 43 43 H 1.09006 * 110.37855 * 258.90857 * 27 14 12 44 44 H 1.08997 * 110.38152 * 21.14584 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8268 -0.4200 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6964 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 0.8736 0.9274 2.7905 16 6 1.5834 1.5810 3.9942 17 1 2.1937 2.4380 3.7092 18 6 0.5008 1.9385 5.0566 19 1 -0.3725 2.4741 4.6839 20 6 1.2951 2.6223 6.2108 21 6 2.1076 1.4772 6.8575 22 6 1.7269 0.2096 6.0332 23 1 1.9166 -0.7533 6.5074 24 6 0.2300 0.5269 5.6859 25 6 2.4003 0.4282 4.6448 26 6 3.8931 0.7447 4.7543 27 6 2.1009 -0.8062 3.7692 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7082 1.1608 -3.4845 32 1 -0.1327 0.6135 3.0679 33 1 0.8378 1.6195 1.9493 34 1 1.9642 3.3848 5.8121 35 1 0.6096 3.0609 6.9361 36 1 1.8217 1.3511 7.9018 37 1 3.1760 1.6766 6.7764 38 1 -0.1781 -0.1739 4.9575 39 1 -0.3923 0.5898 6.5786 40 1 4.3842 -0.0218 5.3537 41 1 4.3342 0.7647 3.7577 42 1 4.0245 1.7171 5.2292 43 1 1.2827 -1.3857 4.1968 44 1 2.9914 -1.4265 3.6673 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:35 Heat of formation + Delta-G solvation = -50.908208 kcal Electronic energy + Delta-G solvation = -23037.461908 eV Core-core repulsion = 19953.469115 eV Total energy + Delta-G solvation = -3083.992793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.44994 -40.12423 -36.71058 -35.84203 -33.37285 -32.29923 -31.26212 -29.60176 -27.67945 -27.19733 -27.03984 -24.94076 -23.37218 -21.56866 -20.75890 -20.13699 -18.98474 -18.39345 -17.50103 -17.21148 -16.90077 -16.28692 -15.98157 -15.55821 -15.42468 -14.69289 -14.52013 -14.10621 -14.00695 -13.71079 -13.43509 -13.12254 -13.02305 -12.91133 -12.75101 -12.67879 -12.42399 -12.24767 -12.14371 -12.06109 -12.00345 -11.88996 -11.77033 -11.45326 -11.25504 -11.13772 -11.06820 -10.71629 -10.61934 -10.31039 -9.57378 -8.17492 -6.28562 1.38753 1.40870 1.49438 1.86980 2.15296 2.44681 3.11420 3.40537 3.44446 3.60858 3.87844 4.02012 4.18507 4.21172 4.23291 4.29266 4.38753 4.52987 4.61100 4.66098 4.67993 4.71392 4.73591 4.77211 4.88261 4.93304 4.97145 4.99188 5.05718 5.07612 5.12367 5.25519 5.27456 5.31976 5.33399 5.41980 5.44671 5.51844 5.56722 5.63928 5.69747 5.93330 6.19175 6.67383 6.81404 7.36711 7.46358 8.88377 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035082 B = 0.004567 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.943645 B = 6128.997995 C = 6440.924450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.035 3.965 3 H 0.034 0.966 4 C -0.533 4.533 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.277 1.277 12 C 0.536 3.464 13 O -0.594 6.594 14 N -0.629 5.629 15 C 0.102 3.898 16 C -0.092 4.092 17 H 0.086 0.914 18 C -0.091 4.091 19 H 0.111 0.889 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.087 4.087 23 H 0.106 0.894 24 C -0.127 4.127 25 C -0.065 4.065 26 C -0.127 4.127 27 C 0.106 3.894 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.266 0.734 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 5.901 21.334 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.014 3.986 3 H 0.052 0.948 4 C -0.572 4.572 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.202 1.202 12 C 0.328 3.672 13 O -0.475 6.475 14 N -0.362 5.362 15 C -0.021 4.021 16 C -0.111 4.111 17 H 0.105 0.895 18 C -0.109 4.109 19 H 0.129 0.871 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.105 4.105 23 H 0.124 0.876 24 C -0.164 4.164 25 C -0.066 4.066 26 C -0.184 4.184 27 C -0.016 4.016 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.133 5.463 21.014 21.817 hybrid contribution 0.512 -0.679 -1.423 1.658 sum -1.621 4.783 19.591 20.232 Atomic orbital electron populations 1.21642 0.95007 0.99215 1.01910 1.18685 0.95379 0.95397 0.89183 0.94801 1.21248 1.31894 1.12828 0.91207 0.93610 1.25602 0.95088 0.95737 1.01376 1.69939 1.36980 1.23483 1.24458 0.85630 0.78652 0.78739 0.78723 1.20157 1.19551 1.20211 1.21369 0.78081 0.83492 0.84299 1.90488 1.40873 1.29238 1.86886 1.49140 1.51874 1.30641 1.04566 1.22723 0.94600 0.86713 0.98028 1.23285 0.96876 0.97025 0.93919 0.89549 1.23611 0.96474 0.96640 0.94166 0.87139 1.22547 0.98501 0.97315 0.96908 1.22664 1.00440 0.93609 0.99002 1.23593 0.94856 0.98917 0.93128 0.87639 1.23669 0.96040 0.96172 1.00559 1.22458 0.95729 0.93084 0.95327 1.21668 0.93526 1.02669 1.00570 1.22530 0.99776 0.96766 0.82569 0.92693 0.90932 0.96289 0.92469 0.89751 0.91192 0.91895 0.90552 0.90680 0.91091 0.92215 0.89418 0.91569 0.95378 0.90120 0.90463 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.72 71.98 0.63 -5.13 16 2 C 0.03 1.85 1.97 -12.28 -0.02 1.83 16 3 H 0.03 1.90 7.95 -2.39 -0.02 1.88 16 4 C -0.53 -32.34 8.37 25.60 0.21 -32.12 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.23 5.30 84.65 0.45 1.68 16 7 N -0.91 -52.16 11.32 21.45 0.24 -51.91 16 8 Si 0.96 46.06 29.54 68.60 2.03 48.08 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 12 C 0.54 26.99 7.26 87.66 0.64 27.63 16 13 O -0.59 -34.51 15.72 -3.01 -0.05 -34.56 16 14 N -0.63 -24.04 3.30 -808.71 -2.67 -26.72 16 15 C 0.10 2.99 4.43 86.50 0.38 3.37 16 16 C -0.09 -2.07 3.07 -8.50 -0.03 -2.10 16 17 H 0.09 2.00 7.89 -2.39 -0.02 1.98 16 18 C -0.09 -1.46 4.34 -7.43 -0.03 -1.49 16 19 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 20 C -0.12 -1.52 6.21 32.14 0.20 -1.32 16 21 C -0.12 -1.57 6.00 32.14 0.19 -1.38 16 22 C -0.09 -1.42 4.09 -7.43 -0.03 -1.45 16 23 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 24 C -0.13 -2.02 6.03 33.33 0.20 -1.82 16 25 C -0.07 -1.47 0.78 -49.89 -0.04 -1.51 16 26 C -0.13 -2.84 8.07 71.98 0.58 -2.26 16 27 C 0.11 3.28 5.88 86.51 0.51 3.79 16 28 H 0.05 2.17 5.34 -2.39 -0.01 2.15 16 29 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.08 2.21 6.58 -2.38 -0.02 2.19 16 33 H 0.07 2.26 6.54 -2.39 -0.02 2.25 16 34 H 0.06 0.87 7.97 -2.39 -0.02 0.85 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.07 0.95 5.73 -2.39 -0.01 0.93 16 38 H 0.06 1.13 5.80 -2.39 -0.01 1.12 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.08 1.46 6.49 -2.38 -0.02 1.44 16 43 H 0.08 2.16 6.69 -2.38 -0.02 2.14 16 44 H 0.05 1.82 7.67 -2.39 -0.02 1.80 16 Total: -1.00 -70.44 322.64 4.38 -66.06 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.98 Total: 11.33 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 3.84 Total: -12.29 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -2.43 Total: -78.63 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.05 Total: -34.56 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -70.44 4.38 -66.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.152 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds